Wall clock time and date at job start Tue Mar 31 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99841 * 2 1 3 5 5 H 1.07999 * 120.00376 * 119.99739 * 4 2 1 6 6 C 1.37876 * 120.00418 * 300.00150 * 4 2 1 7 7 N 1.31518 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 60.00060 * 8 6 4 10 10 H 1.48503 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46951 * 299.99678 * 8 6 4 12 12 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 13 13 C 1.34777 * 120.00271 * 84.99619 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 17 17 C 1.53002 * 109.46966 * 300.00385 * 15 13 12 18 18 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 19 19 N 1.29020 * 126.43760 * 60.02584 * 18 15 13 20 20 N 1.28730 * 108.80898 * 179.97438 * 19 18 15 21 21 N 1.28835 * 109.39969 * 359.97438 * 20 19 18 22 22 C 1.31071 * 107.98914 * 359.75230 * 21 20 19 23 23 C 1.50704 * 126.66181 * 180.23813 * 22 21 20 24 24 C 1.53001 * 109.47380 * 240.17518 * 23 22 21 25 25 C 1.52995 * 109.47024 * 0.17905 * 23 22 21 26 26 C 1.52999 * 109.46916 * 120.17473 * 23 22 21 27 27 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 29 29 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 30 30 H 0.97003 * 120.00117 * 179.97438 * 7 6 4 31 31 H 0.97005 * 120.00266 * 265.00202 * 12 2 1 32 32 H 1.08996 * 109.47407 * 60.00310 * 17 15 13 33 33 H 1.09000 * 109.46986 * 180.02562 * 17 15 13 34 34 H 1.09002 * 109.47075 * 299.99352 * 17 15 13 35 35 H 1.09004 * 109.47026 * 59.99827 * 24 23 22 36 36 H 1.08999 * 109.47028 * 180.02562 * 24 23 22 37 37 H 1.08997 * 109.46949 * 300.00447 * 24 23 22 38 38 H 1.08997 * 109.47173 * 59.99844 * 25 23 22 39 39 H 1.08999 * 109.47067 * 179.97438 * 25 23 22 40 40 H 1.09001 * 109.46987 * 299.99325 * 25 23 22 41 41 H 1.09010 * 109.47178 * 59.99959 * 26 23 22 42 42 H 1.08999 * 109.47221 * 179.97438 * 26 23 22 43 43 H 1.08997 * 109.47425 * 300.00244 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0082 10 1 1.8270 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7289 -3.5878 16 1 1.9758 -1.5507 -3.8326 17 6 4.0512 -1.2799 -3.3222 18 7 2.6986 0.2126 -4.7091 19 7 3.3925 1.2988 -4.7674 20 7 3.1839 1.8639 -5.9051 21 7 2.3575 1.1525 -6.5912 22 6 2.0345 0.1036 -5.8747 23 6 1.0981 -1.0068 -6.2763 24 6 -0.0684 -1.0726 -5.2884 25 6 0.5606 -0.7369 -7.6830 26 6 1.8515 -2.3384 -6.2651 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.7089 1.1614 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 4.0144 -1.9804 -2.4879 33 1 4.4143 -1.7935 -4.2125 34 1 4.7241 -0.4581 -3.0775 35 1 -0.6052 -0.1239 -5.2964 36 1 -0.7454 -1.8760 -5.5787 37 1 0.3146 -1.2649 -4.2863 38 1 1.3916 -0.6901 -8.3867 39 1 -0.1164 -1.5402 -7.9737 40 1 0.0237 0.2117 -7.6910 41 1 2.2346 -2.5308 -5.2628 42 1 1.1742 -3.1416 -6.5551 43 1 2.6826 -2.2916 -6.9688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273349510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:53 Heat of formation + Delta-G solvation = 44.089218 kcal Electronic energy + Delta-G solvation = -25099.491254 eV Core-core repulsion = 21602.376596 eV Total energy + Delta-G solvation = -3497.114658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.34234 -41.03328 -38.48587 -37.18742 -36.57876 -34.54763 -33.14361 -32.34137 -30.56651 -28.49937 -28.30490 -27.36916 -26.55518 -24.95844 -24.69181 -22.79491 -21.37520 -21.03255 -19.53880 -18.28936 -18.14467 -17.41647 -17.10863 -16.78137 -16.41938 -15.76076 -15.37893 -15.13146 -14.90561 -14.52245 -14.33753 -14.00785 -13.80071 -13.70953 -13.50465 -13.25669 -13.05839 -13.02263 -12.95157 -12.86102 -12.74849 -12.70906 -12.69103 -12.28788 -12.26155 -12.17349 -12.16313 -12.01768 -11.76687 -11.16980 -11.13980 -10.81364 -10.60508 -9.92722 -8.18436 -6.36595 0.16842 0.81460 1.13532 1.43146 1.47774 1.48900 1.56558 2.13534 2.44399 2.78052 3.09948 3.13147 3.37860 3.48406 3.59047 3.80615 3.95985 4.04939 4.27352 4.44600 4.46317 4.56811 4.64350 4.69894 4.72097 4.81243 4.86105 4.87693 4.94813 4.95793 4.99863 5.04346 5.08649 5.23532 5.30539 5.35846 5.39827 5.51729 5.62941 5.83551 6.05449 6.67554 6.73859 7.23744 7.39798 7.51714 8.87700 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.003907 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.601342 B = 7165.331307 C = 7323.552343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.083 0.917 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.259 1.259 12 N -0.685 5.685 13 C 0.492 3.508 14 O -0.583 6.583 15 C 0.120 3.880 16 H 0.183 0.817 17 C -0.159 4.159 18 N -0.283 5.283 19 N -0.096 5.096 20 N -0.116 5.116 21 N -0.326 5.326 22 C 0.200 3.800 23 C 0.013 3.987 24 C -0.152 4.152 25 C -0.129 4.129 26 C -0.150 4.150 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.008 0.992 30 H 0.265 0.735 31 H 0.413 0.587 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -15.845 -15.928 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.101 0.899 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.218 1.218 11 H -0.183 1.183 12 N -0.335 5.335 13 C 0.276 3.724 14 O -0.463 6.463 15 C 0.015 3.985 16 H 0.199 0.801 17 C -0.217 4.217 18 N -0.085 5.085 19 N -0.082 5.082 20 N -0.109 5.109 21 N -0.175 5.175 22 C -0.078 4.078 23 C 0.009 3.991 24 C -0.210 4.210 25 C -0.186 4.186 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.250 0.750 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.687 -13.634 -16.032 21.057 hybrid contribution -0.103 -0.224 1.479 1.499 sum 0.583 -13.858 -14.554 20.104 Atomic orbital electron populations 1.21899 0.97997 0.99964 0.99406 1.18384 0.91255 0.91796 0.81565 0.98857 1.21499 1.32736 1.13768 0.90270 0.89926 1.25811 0.94820 0.95494 1.02464 1.70060 1.37032 1.24008 1.24687 0.85388 0.78617 0.78865 0.77425 1.19607 1.21783 1.18326 1.46088 1.64292 1.14445 1.08645 1.20750 0.78697 0.87308 0.85689 1.90776 1.52079 1.18025 1.85388 1.22353 1.05009 0.89604 0.81538 0.80059 1.22284 0.90191 1.02691 1.06519 1.48226 1.29354 1.16590 1.14332 1.78871 1.16309 0.96546 1.16445 1.78547 1.12893 1.21724 0.97724 1.74832 1.12683 1.03376 1.26577 1.26944 0.98197 0.99327 0.83314 1.19635 0.91381 0.89268 0.98774 1.22147 0.97382 1.03911 0.97593 1.21762 1.01844 1.02948 0.92087 1.22170 1.01449 0.93778 1.03335 0.93092 0.91683 0.97327 0.92634 0.75000 0.85684 0.87524 0.92370 0.93921 0.86408 0.93009 0.91892 0.87870 0.93430 0.91351 0.86910 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 9.26 71.98 0.67 -5.72 16 2 C 0.27 13.26 2.56 44.24 0.11 13.37 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.54 -26.70 8.73 25.60 0.22 -26.47 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -51.45 11.32 21.45 0.24 -51.21 16 8 Si 0.97 39.87 29.54 68.60 2.03 41.90 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 N -0.68 -24.60 4.96 -446.12 -2.21 -26.81 16 13 C 0.49 17.98 7.15 87.66 0.63 18.61 16 14 O -0.58 -28.75 15.55 -3.02 -0.05 -28.79 16 15 C 0.12 2.92 2.25 44.25 0.10 3.02 16 16 H 0.18 2.79 3.74 -2.39 -0.01 2.78 16 17 C -0.16 -2.87 9.30 71.98 0.67 -2.20 16 18 N -0.28 -8.71 2.76 -321.35 -0.89 -9.59 16 19 N -0.10 -3.74 12.42 37.02 0.46 -3.28 16 20 N -0.12 -4.61 13.43 37.01 0.50 -4.11 16 21 N -0.33 -11.23 11.71 -50.45 -0.59 -11.83 16 22 C 0.20 5.53 6.40 138.14 0.88 6.42 16 23 C 0.01 0.21 0.75 -52.93 -0.04 0.18 16 24 C -0.15 -2.46 8.31 71.98 0.60 -1.86 16 25 C -0.13 -1.87 8.00 71.98 0.58 -1.30 16 26 C -0.15 -1.34 8.31 71.98 0.60 -0.74 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 28 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.41 10.98 7.96 -92.70 -0.74 10.24 16 32 H 0.12 1.54 7.56 -2.39 -0.02 1.52 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.89 5.57 -2.39 -0.01 0.88 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.49 5.59 -2.38 -0.01 0.48 16 42 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -78.72 349.00 5.24 -73.48 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.29 Total: 15.76 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.47 Total: 4.49 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -2.49 Total: -106.83 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -78.72 5.24 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273349510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.570 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds