Wall clock time and date at job start Tue Mar 31 2020 03:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99635 * 2 1 4 4 C 1.46900 * 110.99718 * 123.95161 * 2 1 3 5 5 C 1.50704 * 109.46756 * 169.99864 * 4 2 1 6 6 C 1.32992 * 119.99840 * 129.03484 * 5 4 2 7 7 C 1.47107 * 119.99794 * 15.39947 * 6 5 4 8 8 O 1.21608 * 120.00210 * 7.24538 * 7 6 5 9 9 N 1.34777 * 119.99674 * 187.25115 * 7 6 5 10 10 C 1.46499 * 120.00054 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47639 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.45645 * 295.02542 * 11 10 9 13 13 C 1.53200 * 109.31166 * 178.59858 * 12 11 10 14 14 N 1.46924 * 108.76256 * 54.65167 * 13 12 11 15 15 C 1.36943 * 120.62537 * 126.36225 * 14 13 12 16 16 H 1.07991 * 120.00339 * 322.41518 * 15 14 13 17 17 C 1.38816 * 119.99614 * 142.41306 * 15 14 13 18 18 N 1.31621 * 120.00133 * 349.78854 * 17 15 14 19 19 Si 1.86802 * 119.99700 * 169.78446 * 17 15 14 20 20 H 1.48497 * 109.47180 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47126 * 120.00453 * 19 17 15 22 22 H 1.48505 * 109.47100 * 240.00248 * 19 17 15 23 23 C 1.46926 * 118.74261 * 306.38659 * 14 13 12 24 24 C 1.53038 * 109.46347 * 174.97088 * 11 10 9 25 25 H 1.09001 * 109.47285 * 56.04444 * 1 2 3 26 26 H 1.09000 * 109.47375 * 296.04669 * 1 2 3 27 27 H 1.09000 * 109.47168 * 176.04352 * 1 2 3 28 28 H 1.09000 * 109.47678 * 60.00299 * 3 2 1 29 29 H 1.09004 * 109.46862 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47097 * 299.99521 * 3 2 1 31 31 H 1.08997 * 109.47113 * 289.99967 * 4 2 1 32 32 H 1.08998 * 109.47261 * 50.00536 * 4 2 1 33 33 H 1.08003 * 119.99956 * 309.04036 * 5 4 2 34 34 H 1.07998 * 119.99984 * 195.40125 * 6 5 4 35 35 H 0.97003 * 120.00123 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.46996 * 299.99778 * 10 9 7 37 37 H 1.09003 * 109.47509 * 59.99263 * 10 9 7 38 38 H 1.09010 * 109.45935 * 54.99482 * 11 10 9 39 39 H 1.08997 * 109.50133 * 298.55869 * 12 11 10 40 40 H 1.08994 * 109.50121 * 58.66400 * 12 11 10 41 41 H 1.09000 * 109.59534 * 294.86823 * 13 12 11 42 42 H 1.08997 * 109.70428 * 174.50329 * 13 12 11 43 43 H 0.96997 * 119.99843 * 180.02562 * 18 17 15 44 44 H 1.09006 * 109.58262 * 293.81810 * 23 14 13 45 45 H 1.08995 * 109.70389 * 173.46839 * 23 14 13 46 46 H 1.09004 * 109.49488 * 301.33267 * 24 11 10 47 47 H 1.08995 * 109.50003 * 61.40189 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4817 -0.9525 0.9729 6 6 4.3054 -0.6423 1.9699 7 6 3.7750 -0.4450 3.3278 8 8 2.6087 -0.6932 3.5670 9 7 4.5815 0.0108 4.3066 10 6 4.0535 0.2067 5.6590 11 6 5.1668 0.7262 6.5709 12 6 6.2523 -0.3435 6.7104 13 6 7.3817 0.1932 7.5956 14 7 6.8090 0.6417 8.8722 15 6 7.3019 0.1730 10.0608 16 1 7.6171 -0.8563 10.1464 17 6 7.3963 1.0212 11.1557 18 7 7.2057 2.3147 11.0045 19 14 7.7938 0.3266 12.8436 20 1 7.9618 -1.1456 12.7461 21 1 9.0516 0.9357 13.3458 22 1 6.6846 0.6378 13.7807 23 6 5.6973 1.6020 8.8493 24 6 4.5871 1.0496 7.9499 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 -1.0252 -0.0709 28 1 1.6459 1.8948 0.8900 29 1 3.0850 1.3424 0.0005 30 1 1.6459 1.8947 -0.8900 31 1 1.7974 -0.2247 2.0628 32 1 1.5090 -1.7406 1.1757 33 1 3.8780 -1.3380 0.0451 34 1 5.3636 -0.5351 1.7826 35 1 5.5119 0.2084 4.1158 36 1 3.2395 0.9311 5.6299 37 1 3.6815 -0.7424 6.0449 38 1 5.5994 1.6284 6.1382 39 1 5.8261 -1.2371 7.1662 40 1 6.6485 -0.5904 5.7255 41 1 7.8683 1.0324 7.0986 42 1 8.1111 -0.5956 7.7794 43 1 7.2721 2.9074 11.7694 44 1 6.0467 2.5561 8.4546 45 1 5.3129 1.7433 9.8594 46 1 3.7978 1.7944 7.8471 47 1 4.1762 0.1428 8.3936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492126708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:26 Heat of formation + Delta-G solvation = 5.137662 kcal Electronic energy + Delta-G solvation = -23817.369820 eV Core-core repulsion = 20422.106439 eV Total energy + Delta-G solvation = -3395.263381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.03666 -38.08966 -37.41841 -34.99923 -33.40558 -32.84461 -30.79204 -29.81088 -27.88903 -27.80472 -26.53701 -24.21742 -22.82295 -22.15220 -21.58395 -20.92070 -19.76243 -19.01191 -17.16824 -16.66723 -16.02346 -15.69212 -15.55191 -15.09176 -14.89238 -14.65116 -14.11078 -13.83529 -13.68309 -13.54504 -13.28879 -13.14428 -12.66941 -12.54272 -12.34585 -12.30186 -12.05295 -11.94039 -11.79089 -11.61994 -11.31946 -10.97638 -10.79169 -10.54511 -10.25742 -10.19548 -10.01629 -9.83661 -9.65418 -9.55847 -9.41315 -8.94581 -8.50073 -8.42604 -6.53411 -5.80918 -3.34386 1.13233 3.15958 3.27966 3.34819 3.42700 3.44963 3.81028 4.47111 4.65184 4.74950 4.91849 5.05376 5.10288 5.17868 5.21921 5.26991 5.32510 5.37343 5.40423 5.49597 5.59878 5.60110 5.63561 5.71157 5.85986 5.90963 6.03190 6.04180 6.10541 6.23696 6.32185 6.44243 6.48482 6.59940 6.68232 6.73359 6.75637 6.78643 6.82494 6.99220 7.32649 7.53662 7.60559 7.80220 8.21439 8.50702 9.22104 9.81656 10.44429 11.27084 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.002409 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.657916 B =11620.411310 C =11794.685505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.023 3.977 4 C 0.044 3.956 5 C -0.049 4.049 6 C -0.222 4.222 7 C 0.539 3.461 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.591 5.591 15 C -0.258 4.258 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.176 3.824 24 C -0.133 4.133 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -3.164 -20.888 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.069 4.069 6 C -0.244 4.244 7 C 0.328 3.672 8 O -0.426 6.426 9 N -0.369 5.369 10 C 0.000 4.000 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.314 5.314 15 C -0.388 4.388 16 H 0.078 0.922 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.051 3.949 24 C -0.173 4.173 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.758 -3.429 -20.964 22.977 hybrid contribution 0.539 0.227 1.495 1.605 sum -8.219 -3.201 -19.469 21.374 Atomic orbital electron populations 1.22340 0.87040 1.02254 1.00545 1.61915 1.08001 1.13823 1.43686 1.22399 1.00689 0.88870 1.00550 1.21972 0.92159 1.00064 0.93952 1.23616 0.95361 0.90122 0.97824 1.22701 1.01011 1.07666 0.93039 1.18682 0.85698 0.77112 0.85670 1.90653 1.16859 1.52056 1.82984 1.46058 1.14161 1.66318 1.10359 1.21579 0.96894 1.01092 0.80467 1.21301 0.94935 0.98704 0.95919 1.22076 0.97591 0.98083 0.98867 1.20914 0.92984 0.96593 0.87610 1.43934 1.35302 1.51577 1.00571 1.19134 1.38416 0.93265 0.87983 0.92175 1.25333 0.99347 0.94947 0.99325 1.69992 1.52940 1.01870 1.29544 0.86240 0.77691 0.78589 0.84341 1.20138 1.21580 1.21508 1.20658 0.85742 0.90510 0.98029 1.22180 0.99566 1.00811 0.94729 0.91438 0.95419 0.91361 0.95547 0.91423 0.91500 0.88783 0.89667 0.85410 0.85148 0.76402 0.91908 0.91614 0.91324 0.92243 0.93501 0.96646 0.92865 0.93630 0.96269 0.90549 0.93154 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.57 60.06 0.57 0.79 16 2 N -0.55 -5.27 5.01 -252.72 -1.27 -6.53 16 3 C 0.02 0.20 9.43 60.06 0.57 0.77 16 4 C 0.04 0.47 4.55 -4.97 -0.02 0.45 16 5 C -0.05 -0.45 8.61 -36.12 -0.31 -0.76 16 6 C -0.22 -2.10 10.00 -37.80 -0.38 -2.48 16 7 C 0.54 6.83 7.55 -12.66 -0.10 6.73 16 8 O -0.54 -8.59 13.31 5.27 0.07 -8.52 16 9 N -0.72 -8.59 5.27 -61.49 -0.32 -8.92 16 10 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 11 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 12 C -0.13 -2.06 5.25 -26.61 -0.14 -2.20 16 13 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 14 N -0.59 -14.59 2.94 -172.32 -0.51 -15.09 16 15 C -0.26 -7.04 9.50 -15.05 -0.14 -7.18 16 16 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 17 C 0.01 0.28 5.03 -17.43 -0.09 0.19 16 18 N -0.90 -26.02 11.52 55.49 0.64 -25.38 16 19 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.18 4.10 5.22 -3.71 -0.02 4.08 16 24 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.56 7.17 -51.93 -0.37 0.19 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.25 4.90 -52.26 -0.26 0.99 16 32 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.40 3.96 7.63 -40.82 -0.31 3.64 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 2.00 6.60 -51.93 -0.34 1.65 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -30.95 370.31 -9.65 -40.60 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.37 Total: 0.87 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.44 Total: 0.87 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -1.46 Total: -55.92 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.95 -9.65 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492126708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.733 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds