Wall clock time and date at job start Tue Mar 31 2020 03:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99635 * 2 1 4 4 C 1.46900 * 110.99718 * 123.95161 * 2 1 3 5 5 C 1.50704 * 109.46756 * 169.99864 * 4 2 1 6 6 C 1.32992 * 119.99840 * 129.03484 * 5 4 2 7 7 C 1.47107 * 119.99794 * 15.39947 * 6 5 4 8 8 O 1.21608 * 120.00210 * 7.24538 * 7 6 5 9 9 N 1.34777 * 119.99674 * 187.25115 * 7 6 5 10 10 C 1.46499 * 120.00054 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47639 * 179.97438 * 10 9 7 12 12 C 1.53041 * 109.45645 * 295.02542 * 11 10 9 13 13 C 1.53200 * 109.31166 * 178.59858 * 12 11 10 14 14 N 1.46924 * 108.76256 * 54.65167 * 13 12 11 15 15 C 1.36943 * 120.62537 * 126.36225 * 14 13 12 16 16 H 1.07991 * 120.00339 * 322.41518 * 15 14 13 17 17 C 1.38816 * 119.99614 * 142.41306 * 15 14 13 18 18 N 1.31621 * 120.00133 * 349.78854 * 17 15 14 19 19 Si 1.86802 * 119.99700 * 169.78446 * 17 15 14 20 20 H 1.48497 * 109.47180 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47126 * 120.00453 * 19 17 15 22 22 H 1.48505 * 109.47100 * 240.00248 * 19 17 15 23 23 C 1.46926 * 118.74261 * 306.38659 * 14 13 12 24 24 C 1.53038 * 109.46347 * 174.97088 * 11 10 9 25 25 H 1.09001 * 109.47285 * 56.04444 * 1 2 3 26 26 H 1.09000 * 109.47375 * 296.04669 * 1 2 3 27 27 H 1.09000 * 109.47168 * 176.04352 * 1 2 3 28 28 H 1.09000 * 109.47678 * 60.00299 * 3 2 1 29 29 H 1.09004 * 109.46862 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47097 * 299.99521 * 3 2 1 31 31 H 1.08997 * 109.47113 * 289.99967 * 4 2 1 32 32 H 1.08998 * 109.47261 * 50.00536 * 4 2 1 33 33 H 1.08003 * 119.99956 * 309.04036 * 5 4 2 34 34 H 1.07998 * 119.99984 * 195.40125 * 6 5 4 35 35 H 0.97003 * 120.00123 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.46996 * 299.99778 * 10 9 7 37 37 H 1.09003 * 109.47509 * 59.99263 * 10 9 7 38 38 H 1.09010 * 109.45935 * 54.99482 * 11 10 9 39 39 H 1.08997 * 109.50133 * 298.55869 * 12 11 10 40 40 H 1.08994 * 109.50121 * 58.66400 * 12 11 10 41 41 H 1.09000 * 109.59534 * 294.86823 * 13 12 11 42 42 H 1.08997 * 109.70428 * 174.50329 * 13 12 11 43 43 H 0.96997 * 119.99843 * 180.02562 * 18 17 15 44 44 H 1.09006 * 109.58262 * 293.81810 * 23 14 13 45 45 H 1.08995 * 109.70389 * 173.46839 * 23 14 13 46 46 H 1.09004 * 109.49488 * 301.33267 * 24 11 10 47 47 H 1.08995 * 109.50003 * 61.40189 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4817 -0.9525 0.9729 6 6 4.3054 -0.6423 1.9699 7 6 3.7750 -0.4450 3.3278 8 8 2.6087 -0.6932 3.5670 9 7 4.5815 0.0108 4.3066 10 6 4.0535 0.2067 5.6590 11 6 5.1668 0.7262 6.5709 12 6 6.2523 -0.3435 6.7104 13 6 7.3817 0.1932 7.5956 14 7 6.8090 0.6417 8.8722 15 6 7.3019 0.1730 10.0608 16 1 7.6171 -0.8563 10.1464 17 6 7.3963 1.0212 11.1557 18 7 7.2057 2.3147 11.0045 19 14 7.7938 0.3266 12.8436 20 1 7.9618 -1.1456 12.7461 21 1 9.0516 0.9357 13.3458 22 1 6.6846 0.6378 13.7807 23 6 5.6973 1.6020 8.8493 24 6 4.5871 1.0496 7.9499 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 -1.0252 -0.0709 28 1 1.6459 1.8948 0.8900 29 1 3.0850 1.3424 0.0005 30 1 1.6459 1.8947 -0.8900 31 1 1.7974 -0.2247 2.0628 32 1 1.5090 -1.7406 1.1757 33 1 3.8780 -1.3380 0.0451 34 1 5.3636 -0.5351 1.7826 35 1 5.5119 0.2084 4.1158 36 1 3.2395 0.9311 5.6299 37 1 3.6815 -0.7424 6.0449 38 1 5.5994 1.6284 6.1382 39 1 5.8261 -1.2371 7.1662 40 1 6.6485 -0.5904 5.7255 41 1 7.8683 1.0324 7.0986 42 1 8.1111 -0.5956 7.7794 43 1 7.2721 2.9074 11.7694 44 1 6.0467 2.5561 8.4546 45 1 5.3129 1.7433 9.8594 46 1 3.7978 1.7944 7.8471 47 1 4.1762 0.1428 8.3936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492126708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:26 Heat of formation + Delta-G solvation = -15.642326 kcal Electronic energy + Delta-G solvation = -23818.270908 eV Core-core repulsion = 20422.106439 eV Total energy + Delta-G solvation = -3396.164469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03001 -39.46250 -38.32074 -36.39638 -34.48917 -34.15940 -32.50850 -31.46299 -29.01864 -28.47340 -27.77981 -25.84965 -24.03285 -23.53246 -22.67894 -22.12137 -20.98131 -20.32175 -18.68060 -17.92927 -17.05676 -16.79343 -16.58572 -16.30581 -16.07476 -15.67210 -15.49461 -15.31608 -15.02853 -14.76247 -14.64568 -14.31773 -13.96152 -13.81786 -13.49304 -13.35912 -13.18303 -12.97486 -12.82111 -12.67037 -12.64228 -12.57171 -12.31679 -12.31256 -11.99726 -11.87450 -11.61220 -11.21653 -11.11183 -10.76116 -10.57936 -10.42428 -9.91460 -9.22031 -8.53936 -7.88386 -5.45571 0.36782 1.44166 1.45952 1.56474 2.26753 2.31950 2.48892 3.10048 3.26902 3.72246 3.81854 3.90887 3.95669 4.00779 4.09505 4.28090 4.35766 4.48502 4.51767 4.54205 4.61036 4.64995 4.69196 4.73294 4.76346 4.80281 4.92734 4.94675 4.98058 4.98640 5.03530 5.14183 5.28625 5.29796 5.31381 5.39665 5.46025 5.51559 5.55157 5.65814 5.76219 6.01512 6.06080 6.44135 6.63058 7.17157 7.29017 7.85277 8.41340 9.16625 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.002409 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.657916 B =11620.411310 C =11794.685505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.045 3.955 5 C -0.043 4.043 6 C -0.222 4.222 7 C 0.532 3.468 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.137 3.863 11 C -0.077 4.077 12 C -0.113 4.113 13 C 0.140 3.860 14 N -0.612 5.612 15 C -0.267 4.267 16 H 0.059 0.941 17 C -0.044 4.044 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.183 3.817 24 C -0.122 4.122 25 H 0.083 0.917 26 H 0.016 0.984 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.414 0.586 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.050 0.950 43 H 0.251 0.749 44 H 0.000 1.000 45 H 0.039 0.961 46 H 0.068 0.932 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -4.096 -23.169 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.063 4.063 6 C -0.243 4.243 7 C 0.323 3.677 8 O -0.465 6.465 9 N -0.362 5.362 10 C 0.013 3.987 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.015 3.985 14 N -0.336 5.336 15 C -0.398 4.398 16 H 0.077 0.923 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.057 3.943 24 C -0.162 4.162 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.292 -4.374 -23.280 25.097 hybrid contribution 0.374 0.526 2.155 2.249 sum -7.918 -3.848 -21.125 22.886 Atomic orbital electron populations 1.22411 0.86528 1.02809 1.00640 1.61995 1.08606 1.14196 1.42783 1.22441 1.01060 0.88387 1.00592 1.21856 0.93639 0.99494 0.93171 1.23793 0.94249 0.89427 0.98846 1.22796 1.02626 1.07922 0.90983 1.19273 0.85184 0.76311 0.86890 1.90661 1.18534 1.53540 1.83733 1.45927 1.14826 1.66143 1.09351 1.21223 0.95942 1.00253 0.81256 1.21132 0.95092 0.98909 0.94491 1.21920 0.96161 0.97400 0.99727 1.21084 0.94440 0.96522 0.86460 1.44222 1.36148 1.51719 1.01464 1.19427 1.37688 0.93315 0.89382 0.92345 1.26070 0.99890 0.95244 1.02791 1.70136 1.54427 1.02982 1.30194 0.85236 0.77063 0.78343 0.79978 1.19051 1.21615 1.21646 1.20458 0.86844 0.90016 0.96953 1.21981 0.98188 1.00643 0.95398 0.89874 0.96550 0.90865 0.96947 0.90839 0.90003 0.91570 0.90261 0.82767 0.81819 0.74857 0.92279 0.92738 0.90544 0.93252 0.89632 0.96534 0.93112 0.94041 0.98205 0.94289 0.91385 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.57 127.69 1.22 1.60 16 2 N -0.55 -9.74 5.01 -953.47 -4.78 -14.52 16 3 C 0.02 0.37 9.43 127.69 1.20 1.57 16 4 C 0.04 0.91 4.55 85.56 0.39 1.29 16 5 C -0.04 -0.67 8.61 24.52 0.21 -0.46 16 6 C -0.22 -3.50 10.00 23.43 0.23 -3.26 16 7 C 0.53 12.46 7.55 86.57 0.65 13.11 16 8 O -0.58 -18.03 13.31 -4.06 -0.05 -18.09 16 9 N -0.71 -15.16 5.27 -466.71 -2.46 -17.61 16 10 C 0.14 3.59 5.06 86.38 0.44 4.03 16 11 C -0.08 -2.26 2.19 -10.77 -0.02 -2.28 16 12 C -0.11 -3.43 5.25 30.68 0.16 -3.27 16 13 C 0.14 5.58 6.52 86.37 0.56 6.14 16 14 N -0.61 -30.51 2.94 -699.09 -2.06 -32.57 16 15 C -0.27 -14.79 9.50 84.03 0.80 -13.99 16 16 H 0.06 3.19 7.85 -2.92 -0.02 3.16 16 17 C -0.04 -2.45 5.03 84.86 0.43 -2.02 16 18 N -0.93 -55.40 11.52 21.65 0.25 -55.15 16 19 Si 0.97 44.96 29.57 68.60 2.03 46.99 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.18 8.71 5.22 86.36 0.45 9.16 16 24 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 28 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 1.05 7.17 -2.38 -0.02 1.04 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.76 4.90 -7.56 -0.04 1.72 16 32 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.41 6.62 7.63 -92.71 -0.71 5.91 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.96 7.15 -2.39 -0.02 1.95 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 45 H 0.04 2.11 6.60 -2.39 -0.02 2.10 16 46 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.90 370.31 0.02 -68.88 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.19 Total: 14.71 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.89 Total: 7.35 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -9.04 Total: -119.85 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.90 0.02 -68.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492126708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.241 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds