Wall clock time and date at job start Tue Mar 31 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.06875 * 2 1 4 4 C 1.53997 * 109.91615 * 238.79900 * 2 1 3 5 5 H 1.09003 * 110.39219 * 120.46461 * 4 2 1 6 6 C 1.50699 * 110.30841 * 358.33777 * 4 2 1 7 7 O 1.21281 * 119.99597 * 277.97967 * 6 4 2 8 8 N 1.34771 * 119.99863 * 97.98047 * 6 4 2 9 9 C 1.47022 * 125.65152 * 0.04707 * 8 6 4 10 10 C 1.54327 * 107.27140 * 181.02157 * 9 8 6 11 11 C 1.55161 * 102.94209 * 22.19141 * 10 9 8 12 12 H 1.08993 * 111.04069 * 82.58991 * 11 10 9 13 13 N 1.46501 * 111.00029 * 206.42720 * 11 10 9 14 14 C 1.46497 * 120.00535 * 52.19425 * 13 11 10 15 15 C 1.36939 * 119.99514 * 232.19560 * 13 11 10 16 16 H 1.08001 * 120.00239 * 22.80429 * 15 13 11 17 17 C 1.38819 * 119.99799 * 202.80737 * 15 13 11 18 18 N 1.31616 * 120.00114 * 14.75243 * 17 15 13 19 19 Si 1.86800 * 119.99958 * 194.75251 * 17 15 13 20 20 H 1.48496 * 109.47110 * 89.99899 * 19 17 15 21 21 H 1.48497 * 109.47233 * 210.00041 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99933 * 19 17 15 23 23 C 1.47430 * 125.64485 * 179.97438 * 8 6 4 24 24 C 1.54594 * 105.14116 * 239.42040 * 4 2 1 25 25 C 1.54937 * 102.92179 * 338.04118 * 24 4 2 26 26 N 1.47898 * 109.92255 * 121.21082 * 2 1 3 27 27 C 1.46907 * 110.99789 * 265.19864 * 26 2 1 28 28 H 1.09004 * 109.47194 * 184.34661 * 1 2 3 29 29 H 1.09001 * 109.47061 * 304.34462 * 1 2 3 30 30 H 1.08996 * 109.47617 * 64.34491 * 1 2 3 31 31 H 1.09001 * 109.87826 * 300.43247 * 9 8 6 32 32 H 1.08994 * 109.88735 * 61.44842 * 9 8 6 33 33 H 1.09004 * 110.71955 * 263.82598 * 10 9 8 34 34 H 1.09001 * 110.72298 * 140.55288 * 10 9 8 35 35 H 1.09004 * 109.47282 * 95.14192 * 14 13 11 36 36 H 1.09000 * 109.47495 * 215.14319 * 14 13 11 37 37 H 1.09004 * 109.47041 * 335.14321 * 14 13 11 38 38 H 0.97002 * 120.00338 * 180.02562 * 18 17 15 39 39 H 1.09001 * 110.36579 * 37.07523 * 23 8 6 40 40 H 1.08996 * 110.46199 * 274.79220 * 23 8 6 41 41 H 1.09000 * 110.72778 * 96.39831 * 24 4 2 42 42 H 1.09003 * 110.72448 * 219.51018 * 24 4 2 43 43 H 1.08998 * 110.67086 * 155.84907 * 25 24 4 44 44 H 1.09001 * 110.66791 * 278.81398 * 25 24 4 45 45 H 1.08996 * 109.46626 * 302.72260 * 27 26 2 46 46 H 1.08998 * 109.47589 * 62.72582 * 27 26 2 47 47 H 1.09006 * 109.47025 * 182.72864 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0545 -0.7501 -1.2384 5 1 2.6709 -0.0904 -1.8492 6 6 0.9044 -1.2892 -2.0494 7 8 0.3760 -2.3337 -1.7323 8 7 0.4633 -0.6106 -3.1271 9 6 1.0104 0.6611 -3.6219 10 6 0.1772 1.0695 -4.8551 11 6 -1.1512 0.2948 -4.6489 12 1 -1.8160 0.8312 -3.9718 13 7 -1.8111 0.0336 -5.9305 14 6 -1.0679 -0.6029 -7.0208 15 6 -3.1226 0.3844 -6.1094 16 1 -3.5646 1.1539 -5.4937 17 6 -3.8841 -0.2491 -7.0819 18 7 -3.4553 -1.3667 -7.6291 19 14 -5.5174 0.4848 -7.6142 20 1 -5.2951 1.4169 -8.7486 21 1 -6.4337 -0.6034 -8.0400 22 1 -6.1218 1.2242 -6.4771 23 6 -0.6469 -1.0214 -4.0058 24 6 2.9058 -1.9117 -0.6764 25 6 3.2681 -1.4185 0.7470 26 7 2.0339 -0.7205 1.1892 27 6 2.3212 0.2122 2.2873 28 1 -0.3634 -1.0247 0.0779 29 1 -0.3633 0.5798 0.8485 30 1 -0.3634 0.4449 -0.9263 31 1 0.9282 1.4256 -2.8493 32 1 2.0551 0.5305 -3.9042 33 1 0.6693 0.7533 -5.7749 34 1 -0.0005 2.1449 -4.8616 35 1 -1.2508 -1.6774 -7.0065 36 1 -1.3978 -0.1908 -7.9745 37 1 -0.0020 -0.4140 -6.8927 38 1 -3.9872 -1.8091 -8.3089 39 1 -1.4409 -1.4866 -3.4216 40 1 -0.2907 -1.7072 -4.7745 41 1 2.3214 -2.8305 -0.6291 42 1 3.8036 -2.0577 -1.2771 43 1 3.4889 -2.2616 1.4017 44 1 4.1116 -0.7290 0.7122 45 1 3.0411 0.9583 1.9511 46 1 1.4000 0.7081 2.5933 47 1 2.7357 -0.3379 3.1322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971560756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:21 Heat of formation + Delta-G solvation = 4.526366 kcal Electronic energy + Delta-G solvation = -25234.729730 eV Core-core repulsion = 21839.439841 eV Total energy + Delta-G solvation = -3395.289889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56252 -38.63835 -37.12269 -34.79561 -32.58049 -31.69135 -31.34023 -29.70159 -28.16299 -26.50894 -26.04192 -25.05039 -23.76100 -22.40661 -21.46797 -20.81852 -19.30094 -18.33012 -17.18208 -17.00349 -16.22873 -15.72447 -15.59423 -14.91783 -14.65360 -14.47160 -14.17831 -13.54185 -13.34154 -13.22534 -12.91083 -12.68382 -12.60640 -12.48340 -12.13829 -12.07797 -11.98516 -11.70872 -11.52915 -11.46578 -11.27541 -10.98070 -10.93009 -10.85247 -10.79158 -10.53736 -10.42568 -10.25926 -9.89220 -9.81893 -9.46196 -8.65662 -8.60445 -8.26463 -6.82455 -5.77535 -3.24879 2.84726 3.24315 3.36986 3.43519 3.44821 3.74039 4.36244 4.43747 4.45671 4.65897 4.97654 4.98758 5.02868 5.07215 5.17114 5.22648 5.25645 5.30741 5.32804 5.47502 5.50436 5.56845 5.61879 5.67005 5.68869 5.79678 5.85289 5.88966 5.93116 6.01051 6.10946 6.28440 6.36514 6.39538 6.56757 6.64530 6.69343 6.78575 6.83809 6.87943 7.29921 7.68062 7.76859 7.86529 8.33384 8.46756 9.17066 9.79715 10.28358 11.26866 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.003381 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.502798 B = 8279.368597 C = 8472.011039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.116 4.116 5 H 0.090 0.910 6 C 0.540 3.460 7 O -0.538 6.538 8 N -0.615 5.615 9 C 0.105 3.895 10 C -0.154 4.154 11 C 0.173 3.827 12 H 0.077 0.923 13 N -0.584 5.584 14 C 0.157 3.843 15 C -0.263 4.263 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.902 5.902 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.086 3.914 24 C -0.112 4.112 25 C 0.037 3.963 26 N -0.515 5.515 27 C 0.017 3.983 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.004 0.996 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 5.191 13.958 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.076 0.924 4 C -0.139 4.139 5 H 0.109 0.891 6 C 0.328 3.672 7 O -0.415 6.415 8 N -0.349 5.349 9 C -0.019 4.019 10 C -0.194 4.194 11 C 0.063 3.937 12 H 0.095 0.905 13 N -0.304 5.304 14 C 0.013 3.987 15 C -0.392 4.392 16 H 0.088 0.912 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.038 4.038 24 C -0.150 4.150 25 C -0.091 4.091 26 N -0.239 5.239 27 C -0.132 4.132 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.023 0.977 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.426 4.119 14.219 20.670 hybrid contribution -0.175 0.995 -0.677 1.216 sum 14.251 5.115 13.543 20.314 Atomic orbital electron populations 1.21955 0.93249 1.03913 1.01517 1.22205 0.97038 0.95174 0.88133 0.92431 1.22251 0.96197 0.98884 0.96530 0.89128 1.19762 0.84149 0.83897 0.79358 1.90688 1.58615 1.23362 1.68846 1.48594 1.35254 1.23485 1.27579 1.22001 0.97528 0.85548 0.96831 1.23190 0.98377 1.01181 0.96610 1.21459 0.91640 0.91895 0.88729 0.90487 1.43860 1.09345 1.70357 1.06850 1.20833 0.89896 0.97420 0.90542 1.19227 0.86701 1.14915 1.18369 0.91168 1.25043 0.97977 0.95600 1.00741 1.70076 1.38768 1.16119 1.29679 0.86225 0.83294 0.78152 0.78678 1.21444 1.21726 1.20405 1.23136 0.87907 1.00307 0.92448 1.22514 0.99136 0.98720 0.94679 1.23221 0.91121 0.98440 0.96277 1.64710 1.26474 1.26311 1.06417 1.22519 1.00758 0.95092 0.94825 0.90454 0.92677 0.91900 0.92070 0.92263 0.90296 0.90600 0.94916 0.93948 0.97747 0.93601 0.91002 0.91584 0.88680 0.90736 0.89704 0.93745 0.95509 0.91238 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.37 37.15 0.31 -1.65 16 2 C 0.08 0.95 3.09 -66.65 -0.21 0.75 16 3 H 0.06 0.57 7.69 -51.93 -0.40 0.17 16 4 C -0.12 -1.41 3.04 -90.42 -0.27 -1.68 16 5 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 6 C 0.54 8.70 4.74 -10.99 -0.05 8.64 16 7 O -0.54 -10.75 15.10 5.56 0.08 -10.67 16 8 N -0.62 -9.84 3.04 -170.51 -0.52 -10.36 16 9 C 0.10 1.35 6.05 -3.06 -0.02 1.33 16 10 C -0.15 -2.35 6.47 -24.89 -0.16 -2.51 16 11 C 0.17 3.39 3.55 -65.77 -0.23 3.16 16 12 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 13 N -0.58 -14.06 2.96 -171.01 -0.51 -14.56 16 14 C 0.16 3.73 7.88 59.85 0.47 4.20 16 15 C -0.26 -7.03 9.61 -15.06 -0.14 -7.17 16 16 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 17 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 18 N -0.90 -25.98 10.80 55.49 0.60 -25.38 16 19 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.09 1.68 6.51 -2.51 -0.02 1.66 16 24 C -0.11 -1.25 6.56 -24.87 -0.16 -1.42 16 25 C 0.04 0.35 6.56 -1.90 -0.01 0.34 16 26 N -0.51 -5.69 5.18 -230.79 -1.20 -6.89 16 27 C 0.02 0.14 9.41 60.07 0.57 0.71 16 28 H 0.08 1.24 6.93 -51.93 -0.36 0.88 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.87 7.17 -51.93 -0.37 0.49 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.08 1.26 5.98 -51.93 -0.31 0.95 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 36 H 0.04 1.08 7.38 -51.93 -0.38 0.69 16 37 H 0.00 0.08 5.96 -51.93 -0.31 -0.23 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 40 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 41 H 0.09 1.31 6.97 -51.93 -0.36 0.95 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.36 8.01 -51.93 -0.42 -0.06 16 45 H 0.03 0.20 7.99 -51.93 -0.42 -0.21 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -30.91 357.59 -9.40 -40.31 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.20 Total: -0.79 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.02 Total: 6.42 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.62 Total: -57.19 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.91 -9.40 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971560756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.833 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds