Wall clock time and date at job start Tue Mar 31 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.06875 * 2 1 4 4 C 1.53997 * 109.91615 * 238.79900 * 2 1 3 5 5 H 1.09003 * 110.39219 * 120.46461 * 4 2 1 6 6 C 1.50699 * 110.30841 * 358.33777 * 4 2 1 7 7 O 1.21281 * 119.99597 * 277.97967 * 6 4 2 8 8 N 1.34771 * 119.99863 * 97.98047 * 6 4 2 9 9 C 1.47022 * 125.65152 * 0.04707 * 8 6 4 10 10 C 1.54327 * 107.27140 * 181.02157 * 9 8 6 11 11 C 1.55161 * 102.94209 * 22.19141 * 10 9 8 12 12 H 1.08993 * 111.04069 * 82.58991 * 11 10 9 13 13 N 1.46501 * 111.00029 * 206.42720 * 11 10 9 14 14 C 1.46497 * 120.00535 * 52.19425 * 13 11 10 15 15 C 1.36939 * 119.99514 * 232.19560 * 13 11 10 16 16 H 1.08001 * 120.00239 * 22.80429 * 15 13 11 17 17 C 1.38819 * 119.99799 * 202.80737 * 15 13 11 18 18 N 1.31616 * 120.00114 * 14.75243 * 17 15 13 19 19 Si 1.86800 * 119.99958 * 194.75251 * 17 15 13 20 20 H 1.48496 * 109.47110 * 89.99899 * 19 17 15 21 21 H 1.48497 * 109.47233 * 210.00041 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99933 * 19 17 15 23 23 C 1.47430 * 125.64485 * 179.97438 * 8 6 4 24 24 C 1.54594 * 105.14116 * 239.42040 * 4 2 1 25 25 C 1.54937 * 102.92179 * 338.04118 * 24 4 2 26 26 N 1.47898 * 109.92255 * 121.21082 * 2 1 3 27 27 C 1.46907 * 110.99789 * 265.19864 * 26 2 1 28 28 H 1.09004 * 109.47194 * 184.34661 * 1 2 3 29 29 H 1.09001 * 109.47061 * 304.34462 * 1 2 3 30 30 H 1.08996 * 109.47617 * 64.34491 * 1 2 3 31 31 H 1.09001 * 109.87826 * 300.43247 * 9 8 6 32 32 H 1.08994 * 109.88735 * 61.44842 * 9 8 6 33 33 H 1.09004 * 110.71955 * 263.82598 * 10 9 8 34 34 H 1.09001 * 110.72298 * 140.55288 * 10 9 8 35 35 H 1.09004 * 109.47282 * 95.14192 * 14 13 11 36 36 H 1.09000 * 109.47495 * 215.14319 * 14 13 11 37 37 H 1.09004 * 109.47041 * 335.14321 * 14 13 11 38 38 H 0.97002 * 120.00338 * 180.02562 * 18 17 15 39 39 H 1.09001 * 110.36579 * 37.07523 * 23 8 6 40 40 H 1.08996 * 110.46199 * 274.79220 * 23 8 6 41 41 H 1.09000 * 110.72778 * 96.39831 * 24 4 2 42 42 H 1.09003 * 110.72448 * 219.51018 * 24 4 2 43 43 H 1.08998 * 110.67086 * 155.84907 * 25 24 4 44 44 H 1.09001 * 110.66791 * 278.81398 * 25 24 4 45 45 H 1.08996 * 109.46626 * 302.72260 * 27 26 2 46 46 H 1.08998 * 109.47589 * 62.72582 * 27 26 2 47 47 H 1.09006 * 109.47025 * 182.72864 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0545 -0.7501 -1.2384 5 1 2.6709 -0.0904 -1.8492 6 6 0.9044 -1.2892 -2.0494 7 8 0.3760 -2.3337 -1.7323 8 7 0.4633 -0.6106 -3.1271 9 6 1.0104 0.6611 -3.6219 10 6 0.1772 1.0695 -4.8551 11 6 -1.1512 0.2948 -4.6489 12 1 -1.8160 0.8312 -3.9718 13 7 -1.8111 0.0336 -5.9305 14 6 -1.0679 -0.6029 -7.0208 15 6 -3.1226 0.3844 -6.1094 16 1 -3.5646 1.1539 -5.4937 17 6 -3.8841 -0.2491 -7.0819 18 7 -3.4553 -1.3667 -7.6291 19 14 -5.5174 0.4848 -7.6142 20 1 -5.2951 1.4169 -8.7486 21 1 -6.4337 -0.6034 -8.0400 22 1 -6.1218 1.2242 -6.4771 23 6 -0.6469 -1.0214 -4.0058 24 6 2.9058 -1.9117 -0.6764 25 6 3.2681 -1.4185 0.7470 26 7 2.0339 -0.7205 1.1892 27 6 2.3212 0.2122 2.2873 28 1 -0.3634 -1.0247 0.0779 29 1 -0.3633 0.5798 0.8485 30 1 -0.3634 0.4449 -0.9263 31 1 0.9282 1.4256 -2.8493 32 1 2.0551 0.5305 -3.9042 33 1 0.6693 0.7533 -5.7749 34 1 -0.0005 2.1449 -4.8616 35 1 -1.2508 -1.6774 -7.0065 36 1 -1.3978 -0.1908 -7.9745 37 1 -0.0020 -0.4140 -6.8927 38 1 -3.9872 -1.8091 -8.3089 39 1 -1.4409 -1.4866 -3.4216 40 1 -0.2907 -1.7072 -4.7745 41 1 2.3214 -2.8305 -0.6291 42 1 3.8036 -2.0577 -1.2771 43 1 3.4889 -2.2616 1.4017 44 1 4.1116 -0.7290 0.7122 45 1 3.0411 0.9583 1.9511 46 1 1.4000 0.7081 2.5933 47 1 2.7357 -0.3379 3.1322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971560756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:20 Heat of formation + Delta-G solvation = -16.253690 kcal Electronic energy + Delta-G solvation = -25235.630821 eV Core-core repulsion = 21839.439841 eV Total energy + Delta-G solvation = -3396.190979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69816 -39.79906 -38.48449 -36.54223 -33.74422 -33.11644 -32.39883 -31.17426 -29.59711 -28.06916 -27.47033 -25.85320 -25.29281 -23.93670 -22.40721 -21.75104 -20.92727 -19.50814 -18.96222 -18.24817 -17.53002 -17.05741 -16.65478 -16.35632 -15.77135 -15.71307 -15.28540 -15.07270 -14.88162 -14.40748 -14.24711 -14.13170 -13.84170 -13.51249 -13.49016 -13.18938 -13.14688 -13.08321 -12.78891 -12.69888 -12.50688 -12.40269 -12.26445 -12.17033 -12.11663 -12.01709 -11.90866 -11.83058 -11.65794 -11.37339 -10.78132 -10.64832 -9.62932 -9.36848 -8.81038 -7.84949 -5.34658 1.47475 1.47643 1.56956 1.61507 1.97232 2.50857 2.99387 3.26393 3.39081 3.54277 3.56277 3.73467 3.93354 4.05040 4.16422 4.19942 4.26153 4.30213 4.36286 4.44236 4.47503 4.50522 4.52370 4.69493 4.71798 4.77099 4.78563 4.81222 4.88115 4.96482 4.99136 5.04774 5.05647 5.18821 5.19983 5.27353 5.31202 5.34388 5.43621 5.64182 5.70083 5.92780 6.13614 6.30185 6.61471 7.11817 7.20016 7.83164 8.26866 9.17651 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.003381 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.502798 B = 8279.368597 C = 8472.011039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.088 0.912 4 C -0.109 4.109 5 H 0.125 0.875 6 C 0.536 3.464 7 O -0.588 6.588 8 N -0.614 5.614 9 C 0.106 3.894 10 C -0.139 4.139 11 C 0.166 3.834 12 H 0.072 0.928 13 N -0.600 5.600 14 C 0.175 3.825 15 C -0.269 4.269 16 H 0.075 0.925 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.283 1.283 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.098 3.902 24 C -0.114 4.114 25 C 0.044 3.956 26 N -0.542 5.542 27 C 0.017 3.983 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.097 0.903 35 H -0.002 1.002 36 H 0.017 0.983 37 H 0.041 0.959 38 H 0.248 0.752 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.788 8.135 15.318 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 H 0.105 0.895 4 C -0.131 4.131 5 H 0.143 0.857 6 C 0.326 3.674 7 O -0.469 6.469 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.178 4.178 11 C 0.057 3.943 12 H 0.091 0.909 13 N -0.321 5.321 14 C 0.030 3.970 15 C -0.399 4.399 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.583 5.583 19 Si 0.799 3.201 20 H -0.209 1.209 21 H -0.226 1.226 22 H -0.192 1.192 23 C -0.028 4.028 24 C -0.153 4.153 25 C -0.083 4.083 26 N -0.267 5.267 27 C -0.131 4.131 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.016 0.984 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.067 7.114 15.617 24.203 hybrid contribution -0.978 0.042 -1.003 1.401 sum 16.089 7.156 14.614 22.883 Atomic orbital electron populations 1.21869 0.95268 1.01410 1.01571 1.22200 0.95379 0.96559 0.88030 0.89463 1.22342 0.94568 0.99687 0.96516 0.85747 1.20616 0.84604 0.83122 0.79008 1.90670 1.60387 1.25799 1.70008 1.48643 1.34244 1.24671 1.27207 1.22245 0.98447 0.84415 0.96488 1.23054 0.95344 1.01687 0.97729 1.21619 0.93581 0.92261 0.86814 0.90939 1.44053 1.08972 1.70442 1.08626 1.20531 0.91785 0.95029 0.89613 1.19603 0.87915 1.14478 1.17869 0.90715 1.25827 1.01403 0.96104 1.01369 1.70252 1.40049 1.17578 1.30442 0.85218 0.79357 0.77109 0.78461 1.20931 1.22568 1.19212 1.22664 0.88374 0.99699 0.92026 1.22526 0.99299 0.96944 0.96490 1.23224 0.91276 0.98957 0.94892 1.64645 1.27775 1.27431 1.06891 1.22555 1.01187 0.95109 0.94224 0.94429 0.91383 0.92796 0.88874 0.88888 0.90682 0.88430 0.98419 0.96384 0.94113 0.94261 0.94632 0.93826 0.92307 0.88439 0.89428 0.91095 0.93812 0.91444 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.37 71.98 0.60 -3.04 16 2 C 0.09 1.73 3.09 45.06 0.14 1.87 16 3 H 0.09 1.27 7.69 -2.39 -0.02 1.25 16 4 C -0.11 -2.32 3.04 -10.66 -0.03 -2.36 16 5 H 0.12 1.82 7.00 -2.39 -0.02 1.80 16 6 C 0.54 16.97 4.74 87.66 0.42 17.39 16 7 O -0.59 -24.65 15.10 -3.03 -0.05 -24.69 16 8 N -0.61 -18.96 3.04 -811.75 -2.47 -21.43 16 9 C 0.11 2.29 6.05 86.73 0.52 2.81 16 10 C -0.14 -3.81 6.47 31.79 0.21 -3.61 16 11 C 0.17 6.45 3.55 46.39 0.16 6.61 16 12 H 0.07 2.86 7.94 -2.39 -0.02 2.84 16 13 N -0.60 -29.31 2.96 -694.96 -2.05 -31.36 16 14 C 0.18 8.49 7.88 127.77 1.01 9.50 16 15 C -0.27 -14.57 9.61 84.03 0.81 -13.76 16 16 H 0.08 3.90 7.84 -2.91 -0.02 3.88 16 17 C -0.05 -2.89 5.06 84.86 0.43 -2.46 16 18 N -0.94 -56.01 10.80 21.65 0.23 -55.78 16 19 Si 0.97 45.04 29.58 68.60 2.03 47.06 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.10 3.94 6.51 86.86 0.57 4.51 16 24 C -0.11 -2.31 6.56 31.80 0.21 -2.11 16 25 C 0.04 0.70 6.56 86.65 0.57 1.27 16 26 N -0.54 -10.58 5.18 -884.07 -4.58 -15.17 16 27 C 0.02 0.23 9.41 127.69 1.20 1.44 16 28 H 0.04 1.24 6.93 -2.39 -0.02 1.23 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.43 7.17 -2.39 -0.02 1.41 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.51 7.87 -2.39 -0.02 1.49 16 33 H 0.07 2.15 5.98 -2.39 -0.01 2.14 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.00 -0.14 7.34 -2.38 -0.02 -0.16 16 36 H 0.02 0.92 7.38 -2.39 -0.02 0.91 16 37 H 0.04 1.64 5.96 -2.38 -0.01 1.62 16 38 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 40 H 0.04 1.93 7.31 -2.39 -0.02 1.91 16 41 H 0.06 1.64 6.97 -2.39 -0.02 1.62 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 0.79 8.01 -2.39 -0.02 0.77 16 45 H 0.04 0.45 7.99 -2.39 -0.02 0.43 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -72.44 357.59 0.85 -71.59 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.93 Total: 11.71 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.81 Total: 18.06 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -8.87 Total: -123.73 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.44 0.85 -71.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971560756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.335 kcal (2) G-P(sol) polarization free energy of solvation -72.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds