Wall clock time and date at job start Tue Mar 31 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99958 * 2 1 4 4 C 1.53032 * 109.52348 * 174.16258 * 3 2 1 5 5 C 1.53123 * 109.27911 * 59.17573 * 4 3 2 6 6 C 1.53123 * 109.16001 * 302.34817 * 5 4 3 7 7 C 1.46842 * 110.99676 * 235.78938 * 2 1 3 8 8 H 1.09002 * 109.46766 * 65.82407 * 7 2 1 9 9 C 1.50706 * 109.45544 * 305.84845 * 7 2 1 10 10 O 1.21277 * 119.99866 * 339.95322 * 9 7 2 11 11 N 1.34772 * 119.99837 * 159.95436 * 9 7 2 12 12 C 1.46499 * 119.99547 * 180.02562 * 11 9 7 13 13 C 1.53010 * 109.47118 * 179.97438 * 12 11 9 14 14 H 1.08999 * 112.84470 * 316.19610 * 13 12 11 15 15 C 1.53784 * 113.61350 * 87.49635 * 13 12 11 16 16 C 1.53786 * 87.07601 * 139.98231 * 15 13 12 17 17 H 1.08996 * 113.68875 * 220.00341 * 16 15 13 18 18 N 1.46497 * 113.61167 * 89.11804 * 16 15 13 19 19 C 1.36942 * 120.00255 * 107.49982 * 18 16 15 20 20 H 1.08004 * 119.99577 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00287 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99946 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99992 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47170 * 119.99871 * 23 21 19 26 26 H 1.48497 * 109.47167 * 239.99953 * 23 21 19 27 27 C 1.53772 * 113.61736 * 184.99943 * 13 12 11 28 28 H 1.08999 * 109.47230 * 184.21551 * 1 2 3 29 29 H 1.09004 * 109.46916 * 304.21176 * 1 2 3 30 30 H 1.08994 * 109.47211 * 64.20929 * 1 2 3 31 31 H 1.09003 * 109.46014 * 294.17985 * 3 2 1 32 32 H 1.08991 * 109.46260 * 54.15359 * 3 2 1 33 33 H 1.08996 * 109.50421 * 179.11872 * 4 3 2 34 34 H 1.08998 * 109.50355 * 299.19707 * 4 3 2 35 35 H 1.09000 * 109.52311 * 182.44010 * 5 4 3 36 36 H 1.09007 * 109.52076 * 62.25123 * 5 4 3 37 37 H 1.09000 * 109.50367 * 297.70910 * 6 5 4 38 38 H 1.09006 * 109.50264 * 177.59249 * 6 5 4 39 39 H 0.97003 * 120.00497 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.47419 * 299.99703 * 12 11 9 41 41 H 1.08991 * 109.47456 * 59.99972 * 12 11 9 42 42 H 1.08998 * 113.61710 * 254.53420 * 15 13 12 43 43 H 1.08999 * 113.61090 * 25.44251 * 15 13 12 44 44 H 0.97004 * 120.00546 * 287.50546 * 18 16 15 45 45 H 0.97007 * 119.99720 * 180.02562 * 22 21 19 46 46 H 1.09008 * 113.61603 * 334.56591 * 27 13 12 47 47 H 1.08995 * 113.61869 * 105.38253 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0208 7 6 1.9952 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3981 -2.1544 -1.1203 10 8 0.9173 -2.5975 -0.0988 11 7 1.3985 -2.8995 -2.2433 12 6 0.8176 -4.2443 -2.2303 13 6 0.9455 -4.8686 -3.6214 14 1 0.6891 -4.1746 -4.4219 15 6 2.2762 -5.6061 -3.8457 16 6 1.4649 -6.6804 -4.5890 17 1 1.7922 -7.6989 -4.3802 18 7 1.3126 -6.4142 -6.0215 19 6 2.0039 -7.1648 -6.9347 20 1 2.6611 -7.9533 -6.5989 21 6 1.8592 -6.9129 -8.2921 22 7 1.0579 -5.9524 -8.7014 23 14 2.8018 -7.9372 -9.5378 24 1 3.6275 -8.9457 -8.8261 25 1 1.8432 -8.6285 -10.4369 26 1 3.6834 -7.0523 -10.3407 27 6 0.2560 -6.2372 -3.7482 28 1 -0.3633 -1.0249 0.0755 29 1 -0.3633 0.5778 0.8499 30 1 -0.3633 0.4471 -0.9252 31 1 1.7324 1.8608 -0.9376 32 1 1.5636 1.9256 0.8330 33 1 3.9099 2.3512 0.1309 34 1 3.7814 0.8574 1.0909 35 1 5.1998 0.4714 -0.8906 36 1 3.8887 1.0354 -1.9561 37 1 3.7814 -1.3837 -0.0954 38 1 3.9098 -1.4304 -1.8708 39 1 1.7828 -2.5450 -3.0605 40 1 1.3469 -4.8618 -1.5046 41 1 -0.2353 -4.1826 -1.9556 42 1 2.9731 -5.0646 -4.4854 43 1 2.7366 -5.9656 -2.9254 44 1 0.7221 -5.7062 -6.3232 45 1 0.9565 -5.7766 -9.6500 46 1 0.1642 -6.7693 -2.8012 47 1 -0.6787 -6.2051 -4.3079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086402425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:37 Heat of formation + Delta-G solvation = -7.918470 kcal Electronic energy + Delta-G solvation = -24073.481928 eV Core-core repulsion = 20677.652391 eV Total energy + Delta-G solvation = -3395.829537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49811 -38.87299 -37.88386 -34.73051 -33.70522 -33.20487 -31.57427 -30.12367 -27.68624 -26.77090 -25.07875 -24.26237 -23.55783 -23.07525 -21.68507 -20.65472 -19.91310 -18.41630 -17.49837 -17.08431 -16.37706 -15.68719 -15.33118 -15.16007 -14.81886 -14.66556 -14.49152 -14.24900 -13.84512 -13.63593 -13.38620 -13.15385 -12.97242 -12.88673 -12.41143 -12.18776 -11.94220 -11.91723 -11.64063 -11.40934 -11.15737 -11.06415 -11.00656 -10.87697 -10.71320 -10.50277 -10.16698 -10.03507 -9.72217 -9.66862 -9.41354 -8.98701 -8.90590 -8.54225 -7.02933 -5.83805 -3.12778 2.58942 3.02826 3.39342 3.45512 3.47508 3.72124 4.43930 4.48872 4.53225 4.61504 4.82360 4.83558 4.94127 5.03933 5.08321 5.17463 5.22693 5.23422 5.28769 5.37331 5.42881 5.45125 5.60964 5.61276 5.62743 5.69447 5.79769 5.81638 5.84858 5.90066 5.94891 6.05361 6.09431 6.19817 6.35285 6.43167 6.57542 6.69978 6.72493 6.81871 6.88413 7.02097 7.52975 7.66915 8.23767 8.35463 9.46245 10.03753 10.37890 11.38715 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.002727 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.399915 B =10263.909260 C =10851.738859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.069 3.931 8 H 0.060 0.940 9 C 0.514 3.486 10 O -0.527 6.527 11 N -0.724 5.724 12 C 0.132 3.868 13 C -0.120 4.120 14 H 0.092 0.908 15 C -0.168 4.168 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.148 4.148 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 14.481 16.756 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.043 4.043 8 H 0.078 0.922 9 C 0.299 3.701 10 O -0.403 6.403 11 N -0.376 5.376 12 C 0.009 3.991 13 C -0.138 4.138 14 H 0.110 0.890 15 C -0.209 4.209 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.345 5.345 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.188 4.188 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.386 13.775 17.799 22.633 hybrid contribution 0.142 0.422 -2.037 2.086 sum 2.528 14.197 15.762 21.363 Atomic orbital electron populations 1.22596 0.86582 1.04283 0.99918 1.61650 1.08272 1.12916 1.41657 1.22146 0.95746 0.88694 1.00625 1.21618 0.94336 1.00202 0.99532 1.21583 1.00280 0.95171 0.98722 1.21554 0.91447 0.98059 1.03515 1.21614 0.96606 0.92328 0.93706 0.92199 1.20390 0.79252 0.86954 0.83482 1.90664 1.45322 1.72599 1.31681 1.46111 1.61462 1.17300 1.12706 1.21470 0.98039 0.81737 0.97857 1.22710 0.99514 0.96623 0.94982 0.88961 1.23885 0.95971 1.00611 1.00430 1.21056 0.92748 0.95781 0.84919 0.91957 1.42183 1.52985 1.40742 0.98559 1.19339 1.19415 1.11489 0.86979 0.90932 1.24765 1.00104 0.99033 0.97033 1.69671 1.40873 1.33130 1.14409 0.86100 0.79061 0.79376 0.81554 1.20476 1.21821 1.21841 1.23442 0.99671 0.95192 1.00459 0.89234 0.91317 0.96164 0.94885 0.90376 0.91369 0.90857 0.91158 0.91938 0.90321 0.90705 0.76466 0.91564 0.91940 0.91524 0.91380 0.78135 0.93493 0.90460 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.10 60.07 0.55 0.70 16 2 N -0.52 -5.66 4.51 -236.33 -1.07 -6.73 16 3 C 0.06 0.46 5.46 -3.84 -0.02 0.44 16 4 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 5 C -0.12 -0.89 6.00 -26.60 -0.16 -1.05 16 6 C -0.11 -0.99 5.36 -26.65 -0.14 -1.13 16 7 C 0.07 0.74 2.24 -68.87 -0.15 0.58 16 8 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 9 C 0.51 6.73 6.26 -10.98 -0.07 6.66 16 10 O -0.53 -8.72 14.53 5.56 0.08 -8.64 16 11 N -0.72 -8.74 5.56 -60.29 -0.33 -9.08 16 12 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 13 C -0.12 -1.75 3.63 -89.81 -0.33 -2.08 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.17 -2.74 7.43 -25.91 -0.19 -2.93 16 16 C 0.17 3.21 4.56 -67.12 -0.31 2.90 16 17 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 18 N -0.71 -17.17 5.31 -52.64 -0.28 -17.44 16 19 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C -0.15 -2.34 7.39 -25.93 -0.19 -2.53 16 28 H 0.09 1.17 5.63 -51.93 -0.29 0.88 16 29 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 40 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 44 H 0.38 9.88 7.90 -40.82 -0.32 9.56 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -31.13 370.44 -10.26 -41.40 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.50 Total: 9.68 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.45 Total: -4.91 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.96 Total: -60.09 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.13 -10.26 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086402425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.480 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds