Wall clock time and date at job start Tue Mar 31 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 C 1.53008 * 109.46767 * 239.99879 * 2 1 3 5 5 N 1.46498 * 109.47016 * 65.00313 * 4 2 1 6 6 C 1.36934 * 120.00296 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99562 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00157 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47191 * 120.00023 * 10 8 6 13 13 H 1.48493 * 109.47397 * 240.00792 * 10 8 6 14 14 C 1.53002 * 109.47236 * 120.00218 * 2 1 3 15 15 N 1.46494 * 109.47107 * 294.99725 * 14 2 1 16 16 C 1.34777 * 120.00379 * 180.02562 * 15 14 2 17 17 O 1.21285 * 119.99368 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00130 * 180.02562 * 16 15 14 19 19 C 1.54137 * 110.74271 * 206.01062 * 18 16 15 20 20 C 1.55158 * 102.88709 * 98.15320 * 19 18 16 21 21 C 1.54840 * 101.65830 * 36.16077 * 20 19 18 22 22 N 1.47853 * 111.37967 * 325.28505 * 18 16 15 23 23 C 1.47954 * 108.36966 * 120.69545 * 22 18 16 24 24 C 1.54832 * 105.06790 * 337.18263 * 23 22 18 25 25 C 1.54140 * 110.74808 * 84.56868 * 18 16 15 26 26 H 1.08990 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46605 * 299.99875 * 1 2 3 28 28 H 1.08998 * 109.47068 * 59.99982 * 1 2 3 29 29 H 1.08999 * 109.46672 * 184.99907 * 4 2 1 30 30 H 1.08995 * 109.47072 * 305.00145 * 4 2 1 31 31 H 0.97009 * 119.99998 * 359.97438 * 5 4 2 32 32 H 0.96992 * 120.00368 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46693 * 174.99552 * 14 2 1 34 34 H 1.08995 * 109.47017 * 54.99606 * 14 2 1 35 35 H 0.97006 * 120.00219 * 359.97438 * 15 14 2 36 36 H 1.09002 * 110.73388 * 216.50312 * 19 18 16 37 37 H 1.09000 * 110.73226 * 339.80251 * 19 18 16 38 38 H 1.09004 * 110.99267 * 154.24783 * 20 19 18 39 39 H 1.08994 * 110.99075 * 278.06506 * 20 19 18 40 40 H 1.08999 * 110.32608 * 204.43192 * 21 20 19 41 41 H 1.08998 * 110.32382 * 82.22536 * 21 20 19 42 42 H 1.09002 * 110.32616 * 218.28665 * 23 22 18 43 43 H 1.09001 * 110.41379 * 96.12761 * 23 22 18 44 44 H 1.09006 * 110.99401 * 278.58320 * 24 23 22 45 45 H 1.09004 * 110.99402 * 154.76459 * 24 23 22 46 46 H 1.09006 * 110.72668 * 20.18299 * 25 18 16 47 47 H 1.08999 * 110.72835 * 143.48064 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 2.0018 -0.4202 -3.6856 7 1 2.5628 -1.3376 -3.7865 8 6 1.6342 0.2964 -4.8161 9 7 0.9501 1.4141 -4.6932 10 14 2.1102 -0.3255 -6.5120 11 1 2.8701 -1.5944 -6.3786 12 1 0.8834 -0.5656 -7.3135 13 1 2.9552 0.6887 -7.1920 14 6 2.0401 -0.7213 1.2492 15 7 1.6526 0.0353 2.4423 16 6 1.9966 -0.4131 3.6659 17 8 2.6266 -1.4433 3.7791 18 6 1.5975 0.3649 4.8932 19 6 2.5727 0.0901 6.0548 20 6 3.5348 1.3059 5.9938 21 6 2.5723 2.4462 5.5805 22 7 1.6178 1.8212 4.6385 23 6 0.2610 2.3568 4.8860 24 6 -0.6865 1.1428 4.7252 25 6 0.1662 -0.0030 5.3314 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 1.1482 0.8591 -2.3518 32 1 0.6935 1.9151 -5.4831 33 1 3.1264 -0.7995 1.2054 34 1 1.6054 -1.7198 1.2951 35 1 1.1490 0.8594 2.3518 36 1 2.0420 0.0655 7.0066 37 1 3.1160 -0.8404 5.8906 38 1 3.9772 1.5032 6.9703 39 1 4.3076 1.1548 5.2402 40 1 3.1233 3.2461 5.0859 41 1 2.0453 2.8318 6.4532 42 1 0.0181 3.1261 4.1530 43 1 0.1902 2.7611 5.8957 44 1 -0.9038 0.9535 3.6739 45 1 -1.6060 1.2872 5.2924 46 1 -0.1293 -0.9660 4.9149 47 1 0.0854 -0.0104 6.4184 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:14 Heat of formation + Delta-G solvation = -29.889540 kcal Electronic energy + Delta-G solvation = -24670.794889 eV Core-core repulsion = 21274.012615 eV Total energy + Delta-G solvation = -3396.782274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14500 -38.61716 -36.71929 -34.53029 -34.04978 -32.34785 -31.65068 -30.02247 -28.62315 -26.45471 -25.80703 -25.27919 -22.89189 -21.96563 -21.59242 -21.04669 -20.13301 -19.11119 -17.63145 -16.93234 -16.47104 -15.80767 -15.34302 -15.20561 -14.64971 -14.56010 -14.25698 -14.01630 -13.76235 -13.60306 -13.31515 -12.96795 -12.78654 -12.58004 -12.33914 -12.19963 -11.99640 -11.90741 -11.79417 -11.43006 -11.27811 -11.16424 -11.02328 -10.88390 -10.71980 -10.65464 -10.50817 -10.35179 -10.02677 -9.83677 -9.64096 -8.86679 -8.84644 -8.80692 -6.88705 -5.74275 -3.02325 2.62977 3.29543 3.45474 3.51395 3.53505 3.56665 4.14255 4.15948 4.42394 4.61950 4.62176 4.69100 4.78831 4.86215 5.01118 5.12751 5.16175 5.22837 5.29790 5.35378 5.43797 5.46198 5.51873 5.54736 5.61009 5.62185 5.67364 5.78486 5.82542 5.89494 5.93032 6.02557 6.08167 6.17664 6.32017 6.40195 6.44816 6.56352 6.64721 6.70680 6.82894 6.92782 7.68611 7.73885 8.34771 8.44997 9.56250 10.14180 10.49098 11.48869 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.002897 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.609809 B = 9662.705785 C = 9890.947464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.125 3.875 15 N -0.707 5.707 16 C 0.539 3.461 17 O -0.550 6.550 18 C 0.069 3.931 19 C -0.126 4.126 20 C -0.133 4.133 21 C 0.035 3.965 22 N -0.505 5.505 23 C 0.031 3.969 24 C -0.135 4.135 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 2.213 26.081 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.001 3.999 15 N -0.358 5.358 16 C 0.324 3.676 17 O -0.427 6.427 18 C -0.024 4.024 19 C -0.165 4.165 20 C -0.171 4.171 21 C -0.092 4.092 22 N -0.229 5.229 23 C -0.097 4.097 24 C -0.173 4.173 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.302 1.484 25.434 25.510 hybrid contribution -0.423 0.298 -0.233 0.567 sum -1.725 1.782 25.200 25.322 Atomic orbital electron populations 1.21775 0.94780 1.01773 1.01398 1.21536 0.96619 1.00553 0.94146 0.90512 1.20576 0.96586 0.94160 0.85425 1.42352 1.66872 1.27709 1.00598 1.19294 1.28442 1.05385 0.83682 0.91120 1.24732 1.01103 0.97446 0.97828 1.69665 1.43696 1.16658 1.28319 0.86112 0.77570 0.77833 0.84676 1.20550 1.21918 1.21900 1.21415 1.00061 0.95162 0.83244 1.45937 1.56906 1.27547 1.05375 1.19918 0.78666 0.84809 0.84246 1.90681 1.40536 1.24990 1.86541 1.22394 0.97014 0.89260 0.93739 1.22831 0.96860 1.00624 0.96165 1.22790 0.98082 0.94194 1.02044 1.23298 0.94210 0.97570 0.94147 1.65274 1.06654 1.01684 1.49334 1.23357 0.87750 0.97716 1.00836 1.22846 0.98182 0.94074 1.02243 1.22850 0.92318 0.99961 1.01302 0.92930 0.93992 0.91208 0.96161 0.96064 0.78206 0.93617 0.91533 0.91565 0.75865 0.90686 0.88722 0.90507 0.90484 0.89706 0.92843 0.89431 0.92757 0.90226 0.90183 0.90211 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.94 37.16 0.33 -1.80 16 2 C -0.11 -1.77 2.46 -90.61 -0.22 -1.99 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.16 3.28 5.65 -4.04 -0.02 3.26 16 5 N -0.73 -18.61 5.33 -59.91 -0.32 -18.93 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 10 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 C 0.13 1.85 5.06 -4.04 -0.02 1.83 16 15 N -0.71 -9.26 5.21 -60.30 -0.31 -9.57 16 16 C 0.54 7.38 6.68 -10.99 -0.07 7.30 16 17 O -0.55 -9.38 15.66 5.55 0.09 -9.29 16 18 C 0.07 0.70 0.91 -131.04 -0.12 0.58 16 19 C -0.13 -1.18 5.99 -25.00 -0.15 -1.33 16 20 C -0.13 -1.11 7.07 -24.62 -0.17 -1.28 16 21 C 0.04 0.28 6.72 -2.27 -0.02 0.26 16 22 N -0.50 -4.64 4.79 -214.07 -1.03 -5.66 16 23 C 0.03 0.23 6.72 -2.28 -0.02 0.21 16 24 C -0.14 -0.96 7.07 -24.62 -0.17 -1.14 16 25 C -0.13 -1.05 6.03 -24.99 -0.15 -1.20 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.53 7.18 -51.93 -0.37 0.15 16 28 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 10.16 6.85 -40.82 -0.28 9.88 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.41 4.82 7.10 -40.82 -0.29 4.53 16 36 H 0.07 0.57 7.30 -51.93 -0.38 0.19 16 37 H 0.09 1.07 6.85 -51.93 -0.36 0.72 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.35 7.08 -51.93 -0.37 -0.02 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.34 7.08 -51.93 -0.37 -0.03 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 47 H 0.08 0.56 7.30 -51.93 -0.38 0.18 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -32.31 365.33 -9.61 -41.92 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.19 Total: 8.76 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.05 Total: -2.71 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.93 Total: -61.81 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.31 -9.61 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.026 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds