Wall clock time and date at job start Tue Mar 31 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 C 1.54135 * 110.74682 * 327.45960 * 18 16 15 20 20 C 1.57058 * 102.00888 * 97.57266 * 19 18 16 21 21 C 1.54837 * 101.72730 * 36.31253 * 20 19 18 22 22 N 1.47856 * 110.77596 * 87.12813 * 18 16 15 23 23 C 1.47957 * 108.37562 * 120.33024 * 22 18 16 24 24 C 1.54834 * 105.06389 * 337.18389 * 23 22 18 25 25 C 1.54139 * 110.74827 * 206.01411 * 18 16 15 26 26 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 27 27 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 30 30 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 36 36 H 1.09003 * 110.72903 * 215.77006 * 19 18 16 37 37 H 1.09008 * 110.72740 * 339.06806 * 19 18 16 38 38 H 1.08999 * 111.11063 * 278.12764 * 20 19 18 39 39 H 1.09006 * 110.80930 * 154.35592 * 20 19 18 40 40 H 1.09002 * 110.32245 * 204.25704 * 21 20 19 41 41 H 1.09002 * 110.32347 * 82.05760 * 21 20 19 42 42 H 1.08997 * 110.32140 * 218.28751 * 23 22 18 43 43 H 1.09002 * 110.40391 * 96.12587 * 23 22 18 44 44 H 1.08999 * 110.99139 * 278.58100 * 24 23 22 45 45 H 1.08997 * 110.98996 * 154.76301 * 24 23 22 46 46 H 1.09004 * 110.72893 * 20.92025 * 25 18 16 47 47 H 1.08999 * 110.72914 * 144.21719 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 1.9557 -0.1505 6.0117 10 14 0.6536 1.8766 4.6422 11 1 -0.7997 1.5720 4.6600 12 1 0.9828 2.7850 5.7698 13 1 1.0059 2.5339 3.3580 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 6 0.2466 1.0747 -4.6746 20 6 0.6999 2.5250 -4.2773 21 6 1.9469 2.7216 -5.1738 22 7 2.6066 1.3978 -5.2108 23 6 3.1342 1.1329 -6.5675 24 6 2.8644 -0.3711 -6.8175 25 6 1.4925 -0.5641 -6.1187 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1264 -0.7995 1.2056 30 1 1.6054 -1.7198 1.2950 31 1 1.1483 0.8591 2.3518 32 1 1.6960 0.3485 6.8020 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 -0.3368 1.0860 -5.5953 37 1 -0.3125 0.6000 -3.8681 38 1 0.9658 2.5778 -3.2215 39 1 -0.0743 3.2529 -4.5203 40 1 2.6138 3.4650 -4.7369 41 1 1.6478 3.0237 -6.1775 42 1 4.2043 1.3366 -6.6040 43 1 2.6085 1.7396 -7.3049 44 1 3.6311 -0.9885 -6.3495 45 1 2.7922 -0.5828 -7.8843 46 1 1.3606 -1.6002 -5.8070 47 1 0.6788 -0.2501 -6.7725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:16 Heat of formation + Delta-G solvation = -22.583180 kcal Electronic energy + Delta-G solvation = -24708.311420 eV Core-core repulsion = 21311.845973 eV Total energy + Delta-G solvation = -3396.465447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21720 -38.65379 -36.89237 -34.86841 -33.92772 -32.48286 -31.69575 -30.46370 -28.67027 -26.69104 -25.87756 -25.47340 -22.74629 -22.06929 -21.52279 -21.11397 -20.34115 -19.26673 -17.81445 -17.33881 -16.57359 -15.77378 -15.46252 -15.32929 -14.69717 -14.60571 -14.41652 -13.99439 -13.85439 -13.69816 -13.32903 -13.15654 -12.83251 -12.62078 -12.49434 -12.37002 -12.18309 -11.98539 -11.80721 -11.51392 -11.44053 -11.33892 -11.22101 -11.02883 -10.78394 -10.75754 -10.59802 -10.56337 -10.12782 -9.89728 -9.57553 -8.99655 -8.89311 -8.80060 -7.22395 -5.75979 -3.11459 2.48145 3.12557 3.36235 3.38153 3.44422 3.78157 3.95313 4.07871 4.34903 4.56382 4.59010 4.60597 4.69759 4.77845 4.89833 4.94362 5.08502 5.11982 5.17418 5.25231 5.27920 5.35162 5.44898 5.49665 5.54670 5.55488 5.60162 5.67225 5.69477 5.74873 5.76280 5.89298 5.93833 5.97619 6.10381 6.25065 6.42231 6.43705 6.48114 6.56269 6.67999 6.76968 7.50629 8.00751 8.23287 8.43027 9.22016 9.94114 10.13991 11.42595 Molecular weight = 295.20amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.003105 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.411921 B = 9014.164637 C = 9504.921265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.721 5.721 16 C 0.542 3.458 17 O -0.538 6.538 18 C 0.070 3.930 19 C -0.141 4.141 20 C -0.136 4.136 21 C 0.035 3.965 22 N -0.499 5.499 23 C 0.037 3.963 24 C -0.129 4.129 25 C -0.121 4.121 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 5.595 -29.368 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.373 5.373 16 C 0.327 3.673 17 O -0.413 6.413 18 C -0.022 4.022 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.093 4.093 22 N -0.224 5.224 23 C -0.091 4.091 24 C -0.167 4.167 25 C -0.160 4.160 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.118 4.686 -28.859 29.403 hybrid contribution -1.549 1.675 -0.407 2.317 sum -4.667 6.361 -29.266 30.311 Atomic orbital electron populations 1.21812 0.94870 1.02258 1.01079 1.21604 0.96525 1.00586 0.94673 0.90653 1.20548 0.97245 0.94200 0.84265 1.42689 1.67997 1.26993 1.02342 1.19076 1.29447 1.07058 0.81704 0.89164 1.24671 1.00853 0.98615 0.95095 1.69700 1.51359 1.40314 0.96900 0.86548 0.80421 0.84664 0.76902 1.21087 1.21713 1.20385 1.21396 1.00389 0.95200 0.82775 1.46123 1.57726 1.27638 1.05849 1.19957 0.78689 0.84830 0.83869 1.90674 1.39310 1.24789 1.86537 1.22380 0.91766 0.93395 0.94691 1.23400 0.95724 0.95700 1.03109 1.23182 0.97372 0.96284 1.00553 1.23303 0.95066 0.91646 0.99254 1.65033 1.30086 1.00860 1.26428 1.23277 1.01133 0.96358 0.88319 1.22753 0.97515 0.95956 1.00485 1.22754 0.97971 1.00714 0.94568 0.93815 0.92302 0.91853 0.95232 0.95109 0.80659 0.93064 0.91157 0.91213 0.76658 0.89941 0.89844 0.90390 0.90001 0.89564 0.92774 0.89823 0.92985 0.89831 0.90683 0.89565 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.17 3.17 5.65 -4.04 -0.02 3.15 16 5 N -0.75 -17.85 5.13 -59.91 -0.31 -18.16 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 10 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 14 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 15 N -0.72 -8.66 4.92 -60.29 -0.30 -8.95 16 16 C 0.54 7.14 6.89 -10.99 -0.08 7.06 16 17 O -0.54 -9.00 15.98 5.56 0.09 -8.91 16 18 C 0.07 0.69 0.93 -131.04 -0.12 0.57 16 19 C -0.14 -1.02 5.61 -23.94 -0.13 -1.16 16 20 C -0.14 -0.89 6.86 -23.56 -0.16 -1.05 16 21 C 0.03 0.25 6.75 -2.27 -0.02 0.24 16 22 N -0.50 -4.81 5.37 -214.07 -1.15 -5.96 16 23 C 0.04 0.30 6.74 -2.28 -0.02 0.28 16 24 C -0.13 -1.09 7.07 -24.62 -0.17 -1.27 16 25 C -0.12 -1.08 5.72 -24.99 -0.14 -1.23 16 26 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.96 7.18 -51.93 -0.37 0.59 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.36 8.23 4.71 -40.82 -0.19 8.04 16 32 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 4.01 4.75 -40.82 -0.19 3.81 16 36 H 0.08 0.49 7.32 -51.93 -0.38 0.11 16 37 H 0.08 0.61 7.20 -51.92 -0.37 0.24 16 38 H 0.08 0.55 6.73 -51.93 -0.35 0.20 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.33 7.13 -51.93 -0.37 -0.04 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.34 7.14 -51.93 -0.37 -0.03 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.90 7.37 -51.93 -0.38 0.52 16 47 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -33.78 358.45 -9.21 -43.00 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.98 Total: 7.39 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.03 Total: -2.30 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.98 Total: -61.90 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.78 -9.21 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.413 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds