Wall clock time and date at job start Tue Mar 31 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 117.00062 * 2 1 4 4 C 1.38096 * 119.99936 * 0.24072 * 3 2 1 5 5 C 1.39835 * 119.84143 * 180.27191 * 4 3 2 6 6 C 1.47437 * 120.07271 * 179.71844 * 5 4 3 7 7 O 1.21515 * 119.99452 * 123.56061 * 6 5 4 8 8 N 1.34773 * 120.00084 * 303.55359 * 6 5 4 9 9 C 1.33306 * 119.99570 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00597 * 0.02562 * 9 8 6 11 11 C 1.46792 * 119.99838 * 180.02562 * 9 8 6 12 12 N 1.29313 * 119.99627 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00057 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47458 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47421 * 120.00226 * 13 11 9 16 16 H 1.48499 * 109.47308 * 240.00014 * 13 11 9 17 17 C 1.39813 * 119.84448 * 359.74428 * 5 4 3 18 18 N 1.48017 * 119.99779 * 180.02562 * 17 5 4 19 19 O 1.31709 * 119.99936 * 173.34207 * 18 17 5 20 20 O 1.31700 * 120.00324 * 353.34350 * 18 17 5 21 21 C 1.37733 * 119.99615 * 359.97438 * 17 5 4 22 22 C 1.38880 * 120.15829 * 0.02562 * 21 17 5 23 23 O 1.35777 * 119.91830 * 179.97438 * 22 21 17 24 24 C 1.42896 * 117.00338 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47114 * 299.99817 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99561 * 1 2 3 28 28 H 1.08003 * 120.07711 * 0.02562 * 4 3 2 29 29 H 0.96997 * 120.00108 * 0.02562 * 8 6 5 30 30 H 0.97008 * 119.99729 * 179.97438 * 12 11 9 31 31 H 1.08008 * 119.92097 * 180.02562 * 21 17 5 32 32 H 1.08998 * 109.47369 * 59.99654 * 24 23 22 33 33 H 1.09005 * 109.47119 * 299.99391 * 24 23 22 34 34 H 1.09002 * 109.46958 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2943 2.3699 0.0050 5 6 1.9326 3.6141 -0.0007 6 6 1.1345 4.8538 -0.0017 7 8 1.2979 5.6821 0.8723 8 7 0.2241 5.0685 -0.9720 9 6 -0.4978 6.1892 -0.9724 10 1 -0.3528 6.9253 -0.1956 11 6 -1.4898 6.4227 -2.0289 12 7 -1.6638 5.5411 -2.9587 13 14 -2.5008 7.9934 -2.0300 14 1 -2.1133 8.8325 -0.8676 15 1 -2.2492 8.7432 -3.2868 16 1 -3.9434 7.6537 -1.9367 17 6 3.3291 3.6796 -0.0062 18 7 4.0083 4.9948 -0.0117 19 8 5.3176 5.0604 0.1154 20 8 3.3034 6.0994 -0.1438 21 6 4.0729 2.5204 -0.0053 22 6 3.4390 1.2847 0.0005 23 8 4.1769 0.1450 0.0008 24 6 5.5983 0.2924 -0.0044 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2157 2.3148 0.0094 29 1 0.0936 4.4072 -1.6694 30 1 -2.3196 5.6953 -3.6567 31 1 5.1517 2.5724 -0.0090 32 1 5.9097 0.8432 0.8831 33 1 5.9037 0.8387 -0.8968 34 1 6.0656 -0.6924 -0.0040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005670000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:05 Heat of formation + Delta-G solvation = -42.865477 kcal Electronic energy + Delta-G solvation = -24020.350872 eV Core-core repulsion = 20117.787973 eV Total energy + Delta-G solvation = -3902.562899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.85741 -38.87908 -38.66178 -37.70525 -36.14228 -34.41030 -33.29736 -32.17663 -30.82857 -30.58447 -27.83993 -27.39416 -26.02316 -24.78008 -22.75784 -21.80382 -20.15013 -18.85875 -18.57082 -17.74043 -17.56797 -16.61215 -16.27768 -16.24694 -15.69847 -15.38967 -15.18889 -14.93324 -14.67335 -14.30772 -13.99402 -13.77280 -13.03855 -12.75933 -12.63824 -12.39041 -12.20923 -11.69587 -11.55048 -11.48435 -11.33543 -11.05326 -10.77320 -10.57400 -10.34958 -10.20909 -9.82368 -9.61905 -9.02829 -8.66877 -8.58379 -8.03016 -7.22115 -3.86957 -0.15460 1.00010 1.62811 2.02671 2.82768 2.97674 3.02589 3.04566 3.08605 3.29566 3.71575 3.79248 4.44095 4.54342 4.71016 4.82204 4.93577 5.03248 5.06617 5.11093 5.14738 5.35293 5.36996 5.43072 5.45528 5.55512 6.02888 6.11084 6.22458 6.63927 6.74926 6.81596 7.32286 7.50332 7.78606 7.96256 8.67790 8.98962 9.76095 9.91854 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.005227 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.351591 B = 5355.641378 C = 6686.358947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.298 6.298 3 C 0.146 3.854 4 C -0.164 4.164 5 C -0.028 4.028 6 C 0.433 3.567 7 O -0.559 6.559 8 N -0.498 5.498 9 C -0.270 4.270 10 H 0.128 0.872 11 C 0.028 3.972 12 N -0.817 5.817 13 Si 0.944 3.056 14 H -0.254 1.254 15 H -0.272 1.272 16 H -0.273 1.273 17 C 0.017 3.983 18 N -0.012 5.012 19 O -0.283 6.283 20 O -0.129 6.129 21 C -0.118 4.118 22 C 0.090 3.910 23 O -0.299 6.299 24 C 0.021 3.979 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.392 0.608 30 H 0.293 0.707 31 H 0.159 0.841 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -12.486 0.391 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.211 6.211 3 C 0.099 3.901 4 C -0.184 4.184 5 C -0.035 4.035 6 C 0.224 3.776 7 O -0.444 6.444 8 N -0.128 5.128 9 C -0.404 4.404 10 H 0.145 0.855 11 C -0.188 4.188 12 N -0.451 5.451 13 Si 0.768 3.232 14 H -0.177 1.177 15 H -0.197 1.197 16 H -0.199 1.199 17 C -0.075 4.075 18 N 0.439 4.561 19 O -0.440 6.440 20 O -0.324 6.324 21 C -0.138 4.138 22 C 0.042 3.958 23 O -0.213 6.213 24 C -0.074 4.074 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.174 0.826 29 H 0.226 0.774 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.718 -12.893 0.846 13.035 hybrid contribution -0.258 0.847 -0.583 1.060 sum 1.460 -12.047 0.263 12.138 Atomic orbital electron populations 1.23232 0.77700 1.04388 1.02277 1.86174 1.21770 1.25251 1.87883 1.18295 0.88970 0.85354 0.97526 1.21166 1.00811 0.89123 1.07322 1.19734 0.90974 0.95719 0.97111 1.16958 0.85345 0.87490 0.87822 1.90678 1.68552 1.46515 1.38630 1.41180 1.29190 1.19061 1.23360 1.21364 1.11185 0.98384 1.09431 0.85451 1.27212 0.97747 0.99819 0.93985 1.68647 1.30472 1.35012 1.10987 0.85536 0.78318 0.79601 0.79783 1.17743 1.19728 1.19851 1.19588 0.90725 0.81453 1.15700 1.49902 1.02286 1.03559 1.00318 1.96135 0.90274 1.95774 1.61841 1.96367 1.63619 1.20598 1.51788 1.20582 1.01580 0.88945 1.02711 1.17793 0.88101 0.85281 1.04579 1.86125 1.18941 1.27047 1.89140 1.23156 0.78298 1.04081 1.01823 0.87795 0.92051 0.91804 0.82612 0.77416 0.89463 0.82358 0.92319 0.92369 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -4.04 10.28 -34.39 -0.35 -4.40 16 3 C 0.15 2.25 6.69 -39.18 -0.26 1.98 16 4 C -0.16 -2.70 8.76 -39.04 -0.34 -3.05 16 5 C -0.03 -0.57 5.63 -104.97 -0.59 -1.16 16 6 C 0.43 10.55 5.65 -12.52 -0.07 10.48 16 7 O -0.56 -15.78 14.24 -18.83 -0.27 -16.05 16 8 N -0.50 -11.76 5.16 -10.69 -0.06 -11.82 16 9 C -0.27 -6.67 9.92 -13.46 -0.13 -6.80 16 10 H 0.13 3.35 7.19 -52.49 -0.38 2.98 16 11 C 0.03 0.63 5.69 -15.16 -0.09 0.54 16 12 N -0.82 -18.30 13.09 56.00 0.73 -17.56 16 13 Si 0.94 17.63 29.65 -169.99 -5.04 12.59 16 14 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 16 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 17 C 0.02 0.36 6.88 -79.54 -0.55 -0.18 16 18 N -0.01 -0.30 4.98 34.16 0.17 -0.13 16 19 O -0.28 -6.72 19.16 -31.57 -0.60 -7.32 16 20 O -0.13 -3.53 15.58 -39.88 -0.62 -4.15 16 21 C -0.12 -2.00 8.55 -39.53 -0.34 -2.34 16 22 C 0.09 1.39 6.71 -38.89 -0.26 1.13 16 23 O -0.30 -4.09 10.26 -33.69 -0.35 -4.44 16 24 C 0.02 0.21 9.81 101.05 0.99 1.20 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 27 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.16 2.24 6.28 -52.48 -0.33 1.91 16 29 H 0.39 8.63 7.96 -40.82 -0.33 8.30 16 30 H 0.29 5.97 8.26 -40.82 -0.34 5.63 16 31 H 0.16 2.38 5.80 -52.48 -0.30 2.08 16 32 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 33 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -31.90 310.24 -5.26 -37.16 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.90 Total: 8.45 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.65 Total: 2.98 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.85 Total: -29.51 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -2.19 Total: -36.36 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.04 Total: 12.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.90 -5.26 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005670000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.704 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds