Wall clock time and date at job start Tue Mar 31 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 117.00062 * 2 1 4 4 C 1.38096 * 119.99936 * 0.24072 * 3 2 1 5 5 C 1.39835 * 119.84143 * 180.27191 * 4 3 2 6 6 C 1.47437 * 120.07271 * 179.71844 * 5 4 3 7 7 O 1.21515 * 119.99452 * 123.56061 * 6 5 4 8 8 N 1.34773 * 120.00084 * 303.55359 * 6 5 4 9 9 C 1.33306 * 119.99570 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00597 * 0.02562 * 9 8 6 11 11 C 1.46792 * 119.99838 * 180.02562 * 9 8 6 12 12 N 1.29313 * 119.99627 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00057 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47458 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47421 * 120.00226 * 13 11 9 16 16 H 1.48499 * 109.47308 * 240.00014 * 13 11 9 17 17 C 1.39813 * 119.84448 * 359.74428 * 5 4 3 18 18 N 1.48017 * 119.99779 * 180.02562 * 17 5 4 19 19 O 1.31709 * 119.99936 * 173.34207 * 18 17 5 20 20 O 1.31700 * 120.00324 * 353.34350 * 18 17 5 21 21 C 1.37733 * 119.99615 * 359.97438 * 17 5 4 22 22 C 1.38880 * 120.15829 * 0.02562 * 21 17 5 23 23 O 1.35777 * 119.91830 * 179.97438 * 22 21 17 24 24 C 1.42896 * 117.00338 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47114 * 299.99817 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99561 * 1 2 3 28 28 H 1.08003 * 120.07711 * 0.02562 * 4 3 2 29 29 H 0.96997 * 120.00108 * 0.02562 * 8 6 5 30 30 H 0.97008 * 119.99729 * 179.97438 * 12 11 9 31 31 H 1.08008 * 119.92097 * 180.02562 * 21 17 5 32 32 H 1.08998 * 109.47369 * 59.99654 * 24 23 22 33 33 H 1.09005 * 109.47119 * 299.99391 * 24 23 22 34 34 H 1.09002 * 109.46958 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2943 2.3699 0.0050 5 6 1.9326 3.6141 -0.0007 6 6 1.1345 4.8538 -0.0017 7 8 1.2979 5.6821 0.8723 8 7 0.2241 5.0685 -0.9720 9 6 -0.4978 6.1892 -0.9724 10 1 -0.3528 6.9253 -0.1956 11 6 -1.4898 6.4227 -2.0289 12 7 -1.6638 5.5411 -2.9587 13 14 -2.5008 7.9934 -2.0300 14 1 -2.1133 8.8325 -0.8676 15 1 -2.2492 8.7432 -3.2868 16 1 -3.9434 7.6537 -1.9367 17 6 3.3291 3.6796 -0.0062 18 7 4.0083 4.9948 -0.0117 19 8 5.3176 5.0604 0.1154 20 8 3.3034 6.0994 -0.1438 21 6 4.0729 2.5204 -0.0053 22 6 3.4390 1.2847 0.0005 23 8 4.1769 0.1450 0.0008 24 6 5.5983 0.2924 -0.0044 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2157 2.3148 0.0094 29 1 0.0936 4.4072 -1.6694 30 1 -2.3196 5.6953 -3.6567 31 1 5.1517 2.5724 -0.0090 32 1 5.9097 0.8432 0.8831 33 1 5.9037 0.8387 -0.8968 34 1 6.0656 -0.6924 -0.0040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005670000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:58 Heat of formation + Delta-G solvation = -65.110073 kcal Electronic energy + Delta-G solvation = -24021.315470 eV Core-core repulsion = 20117.787973 eV Total energy + Delta-G solvation = -3903.527497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.26524 -40.51164 -39.86428 -39.52798 -37.67432 -36.17263 -35.28298 -33.89476 -32.35144 -31.99441 -29.02390 -28.25846 -27.69662 -26.45146 -24.18196 -23.30820 -21.76596 -20.54659 -20.09122 -19.23107 -19.18296 -18.21877 -17.76785 -17.44403 -17.12974 -16.78737 -16.75221 -16.33794 -15.96343 -15.91314 -15.40345 -15.30917 -14.46516 -14.32899 -13.89647 -13.78904 -13.56052 -13.00914 -12.72083 -12.54299 -12.50969 -12.38392 -12.36417 -12.25626 -12.10128 -12.03061 -11.75808 -11.45523 -10.57384 -10.40713 -10.35732 -9.37918 -8.83310 -5.78610 -1.89836 -0.41838 -0.01702 0.20824 1.29551 1.42553 1.54742 1.76386 1.86726 1.98011 2.11846 2.22901 2.78136 2.95102 3.21529 3.44676 3.57488 3.72159 3.91639 4.11318 4.28407 4.35251 4.36180 4.37316 4.46293 4.55743 4.71573 4.76827 4.77671 4.95821 5.02333 5.67963 5.72092 5.78351 6.13682 6.30379 6.96342 7.28476 8.03313 8.30521 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.005227 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.351591 B = 5355.641378 C = 6686.358947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.294 6.294 3 C 0.175 3.825 4 C -0.157 4.157 5 C -0.031 4.031 6 C 0.428 3.572 7 O -0.612 6.612 8 N -0.500 5.500 9 C -0.351 4.351 10 H 0.089 0.911 11 C 0.012 3.988 12 N -0.848 5.848 13 Si 1.001 2.999 14 H -0.272 1.272 15 H -0.265 1.265 16 H -0.256 1.256 17 C -0.005 4.005 18 N -0.009 5.009 19 O -0.213 6.213 20 O -0.216 6.216 21 C -0.108 4.108 22 C 0.111 3.889 23 O -0.299 6.299 24 C 0.006 3.994 25 H 0.138 0.862 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.177 0.823 29 H 0.396 0.604 30 H 0.301 0.699 31 H 0.186 0.814 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -16.837 0.373 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.205 6.205 3 C 0.126 3.874 4 C -0.178 4.178 5 C -0.037 4.037 6 C 0.219 3.781 7 O -0.501 6.501 8 N -0.130 5.130 9 C -0.483 4.483 10 H 0.107 0.893 11 C -0.201 4.201 12 N -0.482 5.482 13 Si 0.822 3.178 14 H -0.196 1.196 15 H -0.189 1.189 16 H -0.180 1.180 17 C -0.096 4.096 18 N 0.448 4.552 19 O -0.397 6.397 20 O -0.393 6.393 21 C -0.128 4.128 22 C 0.063 3.937 23 O -0.212 6.212 24 C -0.088 4.088 25 H 0.156 0.844 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.194 0.806 29 H 0.230 0.770 30 H 0.113 0.887 31 H 0.203 0.797 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.406 -17.216 0.750 17.565 hybrid contribution -0.118 1.458 -0.358 1.506 sum 3.288 -15.758 0.393 16.102 Atomic orbital electron populations 1.23681 0.75162 1.07034 1.03089 1.86227 1.24233 1.23578 1.86474 1.18393 0.89291 0.85691 0.94037 1.21299 1.02053 0.87847 1.06563 1.19743 0.90933 0.95824 0.97238 1.17479 0.85454 0.88090 0.87126 1.90615 1.70565 1.48251 1.40674 1.40850 1.30052 1.18962 1.23159 1.20857 1.16204 0.99417 1.11792 0.89308 1.27750 0.97368 1.02013 0.92972 1.68640 1.31680 1.36188 1.11657 0.84764 0.77700 0.76322 0.78991 1.19644 1.18947 1.17989 1.20004 0.91088 0.80735 1.17753 1.50461 1.02254 1.04942 0.97515 1.96080 0.90876 1.95979 1.56729 1.96459 1.63485 1.21793 1.57599 1.20807 1.02682 0.87689 1.01625 1.17853 0.88456 0.85503 1.01866 1.86179 1.21276 1.25549 1.88176 1.23612 0.75679 1.06690 1.02781 0.84386 0.91171 0.91086 0.80562 0.77028 0.88723 0.79712 0.91328 0.91318 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.81 113.37 1.11 1.17 16 2 O -0.29 -6.49 10.28 -79.53 -0.82 -7.30 16 3 C 0.17 4.65 6.69 22.53 0.15 4.81 16 4 C -0.16 -4.88 8.76 22.62 0.20 -4.69 16 5 C -0.03 -1.28 5.63 -20.09 -0.11 -1.40 16 6 C 0.43 22.33 5.65 86.67 0.49 22.82 16 7 O -0.61 -37.65 14.24 19.36 0.28 -37.37 16 8 N -0.50 -25.71 5.16 -306.03 -1.58 -27.29 16 9 C -0.35 -19.29 9.92 86.71 0.86 -18.43 16 10 H 0.09 5.37 7.19 -2.91 -0.02 5.35 16 11 C 0.01 0.56 5.69 87.30 0.50 1.06 16 12 N -0.85 -40.03 13.09 23.26 0.30 -39.73 16 13 Si 1.00 38.69 29.65 68.60 2.03 40.73 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 17 C -0.01 -0.20 6.88 36.64 0.25 0.05 16 18 N -0.01 -0.45 4.98 -45.84 -0.23 -0.67 16 19 O -0.21 -9.51 19.16 3.50 0.07 -9.45 16 20 O -0.22 -12.46 15.58 11.46 0.18 -12.28 16 21 C -0.11 -3.21 8.55 22.30 0.19 -3.02 16 22 C 0.11 2.92 6.71 22.71 0.15 3.07 16 23 O -0.30 -6.43 10.26 -77.04 -0.79 -7.22 16 24 C 0.01 0.08 9.81 113.37 1.11 1.19 16 25 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 0.99 7.65 -2.38 -0.02 0.97 16 27 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 28 H 0.18 4.76 6.28 -2.91 -0.02 4.74 16 29 H 0.40 18.71 7.96 -92.71 -0.74 17.97 16 30 H 0.30 12.70 8.26 -92.70 -0.77 11.93 16 31 H 0.19 4.53 5.80 -2.91 -0.02 4.51 16 32 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 33 H 0.07 0.83 7.65 -2.38 -0.02 0.81 16 34 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -76.29 310.24 4.80 -71.50 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.45 Total: 22.46 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.90 Total: 6.62 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.50 Total: -67.69 kcal Atomic # 8 Polarization: -72.53 SS G_CDS: -1.09 Total: -73.62 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.73 kcal Total: -76.29 4.80 -71.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005670000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.388 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds