Wall clock time and date at job start Tue Mar 31 2020 05:04:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50700 * 120.00145 * 2 1
4 4 N 1.46501 * 109.47413 * 125.00075 * 3 2 1
5 5 C 1.36762 * 127.13937 * 270.01527 * 4 3 2
6 6 C 1.50700 * 126.34319 * 359.97438 * 5 4 3
7 7 N 1.30305 * 107.31517 * 179.97438 * 5 4 3
8 8 N 1.28524 * 110.07735 * 0.02562 * 7 5 4
9 9 C 1.31279 * 109.86182 * 0.02562 * 8 7 5
10 10 S 1.76192 * 126.48644 * 180.02562 * 9 8 7
11 11 C 1.81001 * 100.00087 * 359.97375 * 10 9 8
12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9
13 13 O 1.21281 * 120.00242 * 359.97438 * 12 11 10
14 14 N 1.34781 * 119.99927 * 180.02562 * 12 11 10
15 15 C 1.46496 * 119.99933 * 179.97438 * 14 12 11
16 16 C 1.50699 * 109.47125 * 179.97438 * 15 14 12
17 17 H 1.07994 * 119.99974 * 0.02562 * 16 15 14
18 18 C 1.37883 * 119.99916 * 179.97438 * 16 15 14
19 19 N 1.31510 * 120.00258 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 119.99668 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47406 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47154 * 120.00005 * 20 18 16
23 23 H 1.48499 * 109.47017 * 239.99872 * 20 18 16
24 24 H 1.08005 * 119.99763 * 359.97438 * 1 2 3
25 25 H 1.07995 * 120.00118 * 180.02562 * 1 2 3
26 26 H 1.08001 * 120.00435 * 179.97438 * 2 1 3
27 27 H 1.09005 * 109.47133 * 4.99846 * 3 2 1
28 28 H 1.09004 * 109.47516 * 244.99866 * 3 2 1
29 29 H 1.08994 * 109.46858 * 269.99756 * 6 5 4
30 30 H 1.09001 * 109.46950 * 29.99516 * 6 5 4
31 31 H 1.08998 * 109.46965 * 149.99634 * 6 5 4
32 32 H 1.09000 * 109.46608 * 299.99574 * 11 10 9
33 33 H 1.08995 * 109.46795 * 60.00035 * 11 10 9
34 34 H 0.97001 * 119.99781 * 359.97438 * 14 12 11
35 35 H 1.09000 * 109.47577 * 300.00017 * 15 14 12
36 36 H 1.09000 * 109.47284 * 59.99828 * 15 14 12
37 37 H 0.97001 * 120.00243 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9938 1.3319 1.1314
5 6 2.7447 1.7933 2.3945
6 6 1.4477 2.3774 2.8923
7 7 3.8365 1.6344 3.0878
8 7 4.7520 1.1085 2.3549
9 6 4.2898 0.9023 1.1435
10 16 5.1739 0.2013 -0.2098
11 6 6.7737 -0.0992 0.5817
12 6 7.7203 -0.7144 -0.4165
13 8 7.3497 -0.9291 -1.5512
14 7 8.9785 -1.0271 -0.0480
15 6 9.8985 -1.6257 -1.0182
16 6 11.2305 -1.8758 -0.3593
17 1 11.3769 -1.6153 0.6785
18 6 12.2620 -2.4381 -1.0811
19 7 12.0832 -2.7567 -2.3445
20 14 13.9128 -2.7487 -0.2641
21 1 13.8551 -2.3067 1.1524
22 1 14.2262 -4.1993 -0.3170
23 1 14.9694 -1.9877 -0.9780
24 1 -0.5400 0.9354 0.0004
25 1 -0.5400 -0.9353 0.0004
26 1 1.8501 -0.9353 0.0004
27 1 1.3586 2.1317 0.0895
28 1 2.6214 1.4026 -0.9314
29 1 1.4496 3.4555 2.7320
30 1 0.6156 1.9306 2.3482
31 1 1.3400 2.1685 3.9566
32 1 7.1856 0.8448 0.9383
33 1 6.6406 -0.7788 1.4234
34 1 9.2748 -0.8558 0.8596
35 1 9.4865 -2.5695 -1.3753
36 1 10.0318 -0.9460 -1.8599
37 1 12.8090 -3.1520 -2.8524
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000006909309.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:04:28
Heat of formation + Delta-G solvation = 55.739870 kcal
Electronic energy + Delta-G solvation = -20278.061787 eV
Core-core repulsion = 16990.653453 eV
Total energy + Delta-G solvation = -3287.408333 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-43.03264 -38.87932 -36.63311 -34.31473 -33.21271 -32.58789 -32.41901 -30.15950
-28.13895 -27.08794 -26.79231 -23.04435 -22.62485 -21.37164 -20.57861 -19.91370
-18.21430 -17.05070 -16.66385 -16.59018 -15.86729 -15.31536 -15.26200 -15.15502
-14.67299 -14.29417 -14.09762 -13.75958 -13.44561 -13.14500 -12.91845 -12.74377
-12.70704 -12.05424 -12.01797 -11.81772 -11.69198 -11.04912 -10.95637 -10.92806
-10.50717 -10.37504 -10.31550 -10.13057 -9.92761 -9.43259 -9.34944 -8.79412
-8.02387 -7.66081 -6.19792 -4.26882 0.90973 1.39290 1.55874 1.97868
2.52644 2.64627 3.12867 3.23011 3.30362 3.33603 3.92740 4.04319
4.16047 4.21556 4.33620 4.54928 4.67437 4.89931 5.04249 5.15298
5.15843 5.17670 5.26251 5.28686 5.38643 5.48304 5.57823 5.80572
5.97810 6.03328 6.50879 7.20851 7.27955 7.44761 7.60179 7.91524
8.47026 8.49001 8.68092 8.93048 9.39555 10.90406
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.033077 B = 0.002676 C = 0.002515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 846.309368 B =10459.859609 C =11130.462588
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.180 4.180
3 C 0.133 3.867
4 N -0.460 5.460
5 C 0.178 3.822
6 C -0.064 4.064
7 N -0.286 5.286
8 N -0.296 5.296
9 C 0.146 3.854
10 S 0.077 5.923
11 C -0.142 4.142
12 C 0.516 3.484
13 O -0.544 6.544
14 N -0.701 5.701
15 C 0.249 3.751
16 C -0.544 4.544
17 H 0.065 0.935
18 C 0.064 3.936
19 N -0.885 5.885
20 Si 0.905 3.095
21 H -0.271 1.271
22 H -0.282 1.282
23 H -0.282 1.282
24 H 0.101 0.899
25 H 0.108 0.892
26 H 0.122 0.878
27 H 0.103 0.897
28 H 0.109 0.891
29 H 0.085 0.915
30 H 0.076 0.924
31 H 0.095 0.905
32 H 0.121 0.879
33 H 0.121 0.879
34 H 0.395 0.605
35 H 0.030 0.970
36 H 0.030 0.970
37 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.439 9.303 6.706 26.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.199 4.199
3 C 0.011 3.989
4 N -0.155 5.155
5 C -0.091 4.091
6 C -0.123 4.123
7 N -0.126 5.126
8 N -0.139 5.139
9 C -0.228 4.228
10 S 0.304 5.696
11 C -0.294 4.294
12 C 0.299 3.701
13 O -0.424 6.424
14 N -0.349 5.349
15 C 0.129 3.871
16 C -0.582 4.582
17 H 0.083 0.917
18 C -0.140 4.140
19 N -0.522 5.522
20 Si 0.732 3.268
21 H -0.196 1.196
22 H -0.208 1.208
23 H -0.208 1.208
24 H 0.119 0.881
25 H 0.126 0.874
26 H 0.140 0.860
27 H 0.121 0.879
28 H 0.127 0.873
29 H 0.103 0.897
30 H 0.095 0.905
31 H 0.114 0.886
32 H 0.139 0.861
33 H 0.139 0.861
34 H 0.228 0.772
35 H 0.048 0.952
36 H 0.048 0.952
37 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -23.938 8.875 5.780 26.176
hybrid contribution 0.632 0.056 1.015 1.197
sum -23.306 8.931 6.794 25.867
Atomic orbital electron populations
1.23968 0.95340 1.02711 0.97773 1.23135 0.96400 0.98213 1.02144
1.21062 0.91982 0.97687 0.88182 1.46428 1.10085 1.47534 1.11415
1.25064 0.99531 1.02756 0.81783 1.20203 0.88517 1.00702 1.02914
1.73923 0.97400 1.15891 1.25407 1.74689 1.23101 1.17367 0.98788
1.27395 0.87218 1.06072 1.02147 1.86153 1.06054 1.73969 1.03457
1.23813 0.95304 1.07198 1.03106 1.19473 0.83212 0.79701 0.87753
1.90705 1.76356 1.55032 1.20264 1.46388 1.11097 1.61094 1.16298
1.19204 0.86495 0.93685 0.87726 1.21251 0.96081 1.43005 0.97906
0.91682 1.24951 0.99233 0.94990 0.94823 1.69979 1.33018 1.41420
1.07831 0.86340 0.82984 0.78018 0.79471 1.19565 1.20770 1.20762
0.88052 0.87376 0.86023 0.87874 0.87262 0.89655 0.90472 0.88619
0.86056 0.86050 0.77178 0.95197 0.95201 0.92438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.76 14.32 29.01 0.42 -0.35 16
2 C -0.18 -1.24 9.85 -36.03 -0.35 -1.59 16
3 C 0.13 0.96 6.19 -5.19 -0.03 0.92 16
4 N -0.46 -5.07 2.80 -114.81 -0.32 -5.39 16
5 C 0.18 2.01 8.07 -153.99 -1.24 0.76 16
6 C -0.06 -0.39 10.09 36.01 0.36 -0.02 16
7 N -0.29 -4.31 12.18 33.00 0.40 -3.91 16
8 N -0.30 -4.74 11.60 30.68 0.36 -4.39 16
9 C 0.15 2.04 8.07 -88.34 -0.71 1.32 16
10 S 0.08 1.09 20.94 -107.50 -2.25 -1.16 16
11 C -0.14 -2.14 5.72 36.00 0.21 -1.93 16
12 C 0.52 10.08 7.85 -10.99 -0.09 9.99 16
13 O -0.54 -12.58 15.86 5.56 0.09 -12.49 16
14 N -0.70 -14.47 5.55 -61.48 -0.34 -14.81 16
15 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16
16 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16
17 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16
18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
19 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16
20 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16
21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
24 H 0.10 0.30 7.84 -52.48 -0.41 -0.11 16
25 H 0.11 0.45 8.06 -52.49 -0.42 0.03 16
26 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
27 H 0.10 0.45 7.53 -51.93 -0.39 0.06 16
28 H 0.11 0.78 7.86 -51.93 -0.41 0.37 16
29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16
31 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.12 1.67 8.14 -51.92 -0.42 1.25 16
33 H 0.12 1.68 8.14 -51.92 -0.42 1.25 16
34 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16
35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16
36 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16
37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 343.73 15.07 5.18 5.18
Total: -1.00 -34.66 343.73 -7.94 -42.60
By element:
Atomic # 1 Polarization: 6.28 SS G_CDS: -4.88 Total: 1.40 kcal
Atomic # 6 Polarization: 4.19 SS G_CDS: -1.89 Total: 2.31 kcal
Atomic # 7 Polarization: -54.44 SS G_CDS: 0.83 Total: -53.60 kcal
Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Atomic # 16 Polarization: 1.09 SS G_CDS: -2.25 Total: -1.16 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -34.66 -7.94 -42.60 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000006909309.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.336 kcal
(2) G-P(sol) polarization free energy of solvation -34.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds