Wall clock time and date at job start Tue Mar 31 2020 05:04:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50700 * 120.00145 * 2 1
4 4 N 1.46501 * 109.47413 * 125.00075 * 3 2 1
5 5 C 1.36762 * 127.13937 * 270.01527 * 4 3 2
6 6 C 1.50700 * 126.34319 * 359.97438 * 5 4 3
7 7 N 1.30305 * 107.31517 * 179.97438 * 5 4 3
8 8 N 1.28524 * 110.07735 * 0.02562 * 7 5 4
9 9 C 1.31279 * 109.86182 * 0.02562 * 8 7 5
10 10 S 1.76192 * 126.48644 * 180.02562 * 9 8 7
11 11 C 1.81001 * 100.00087 * 359.97375 * 10 9 8
12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9
13 13 O 1.21281 * 120.00242 * 359.97438 * 12 11 10
14 14 N 1.34781 * 119.99927 * 180.02562 * 12 11 10
15 15 C 1.46496 * 119.99933 * 179.97438 * 14 12 11
16 16 C 1.50699 * 109.47125 * 179.97438 * 15 14 12
17 17 H 1.07994 * 119.99974 * 0.02562 * 16 15 14
18 18 C 1.37883 * 119.99916 * 179.97438 * 16 15 14
19 19 N 1.31510 * 120.00258 * 359.97438 * 18 16 15
20 20 Si 1.86798 * 119.99668 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47406 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47154 * 120.00005 * 20 18 16
23 23 H 1.48499 * 109.47017 * 239.99872 * 20 18 16
24 24 H 1.08005 * 119.99763 * 359.97438 * 1 2 3
25 25 H 1.07995 * 120.00118 * 180.02562 * 1 2 3
26 26 H 1.08001 * 120.00435 * 179.97438 * 2 1 3
27 27 H 1.09005 * 109.47133 * 4.99846 * 3 2 1
28 28 H 1.09004 * 109.47516 * 244.99866 * 3 2 1
29 29 H 1.08994 * 109.46858 * 269.99756 * 6 5 4
30 30 H 1.09001 * 109.46950 * 29.99516 * 6 5 4
31 31 H 1.08998 * 109.46965 * 149.99634 * 6 5 4
32 32 H 1.09000 * 109.46608 * 299.99574 * 11 10 9
33 33 H 1.08995 * 109.46795 * 60.00035 * 11 10 9
34 34 H 0.97001 * 119.99781 * 359.97438 * 14 12 11
35 35 H 1.09000 * 109.47577 * 300.00017 * 15 14 12
36 36 H 1.09000 * 109.47284 * 59.99828 * 15 14 12
37 37 H 0.97001 * 120.00243 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9938 1.3319 1.1314
5 6 2.7447 1.7933 2.3945
6 6 1.4477 2.3774 2.8923
7 7 3.8365 1.6344 3.0878
8 7 4.7520 1.1085 2.3549
9 6 4.2898 0.9023 1.1435
10 16 5.1739 0.2013 -0.2098
11 6 6.7737 -0.0992 0.5817
12 6 7.7203 -0.7144 -0.4165
13 8 7.3497 -0.9291 -1.5512
14 7 8.9785 -1.0271 -0.0480
15 6 9.8985 -1.6257 -1.0182
16 6 11.2305 -1.8758 -0.3593
17 1 11.3769 -1.6153 0.6785
18 6 12.2620 -2.4381 -1.0811
19 7 12.0832 -2.7567 -2.3445
20 14 13.9128 -2.7487 -0.2641
21 1 13.8551 -2.3067 1.1524
22 1 14.2262 -4.1993 -0.3170
23 1 14.9694 -1.9877 -0.9780
24 1 -0.5400 0.9354 0.0004
25 1 -0.5400 -0.9353 0.0004
26 1 1.8501 -0.9353 0.0004
27 1 1.3586 2.1317 0.0895
28 1 2.6214 1.4026 -0.9314
29 1 1.4496 3.4555 2.7320
30 1 0.6156 1.9306 2.3482
31 1 1.3400 2.1685 3.9566
32 1 7.1856 0.8448 0.9383
33 1 6.6406 -0.7788 1.4234
34 1 9.2748 -0.8558 0.8596
35 1 9.4865 -2.5695 -1.3753
36 1 10.0318 -0.9460 -1.8599
37 1 12.8090 -3.1520 -2.8524
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000006909309.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:04:26
Heat of formation + Delta-G solvation = 32.671401 kcal
Electronic energy + Delta-G solvation = -20279.062111 eV
Core-core repulsion = 16990.653453 eV
Total energy + Delta-G solvation = -3288.408657 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.96396 -40.59563 -37.29801 -36.24282 -34.43988 -33.87080 -33.34100 -31.64423
-29.11622 -28.57079 -27.67938 -24.72051 -23.93137 -22.20805 -21.67663 -21.03125
-19.41806 -18.58865 -17.65666 -17.57453 -17.47196 -17.06032 -16.73525 -16.07614
-15.86599 -15.44216 -15.00258 -14.69084 -14.63793 -14.39748 -14.03434 -13.89686
-13.63044 -13.51095 -13.21853 -12.93375 -12.78617 -12.75843 -12.52865 -12.24115
-12.06317 -11.47787 -11.36864 -11.35815 -11.08873 -10.86489 -10.82950 -10.57426
-9.94687 -8.77003 -8.30504 -6.46513 -0.17828 0.53137 0.81273 1.00962
1.43752 1.44021 1.51301 1.57836 1.66161 1.82849 2.26918 2.46844
3.04893 3.39650 3.59592 3.70523 3.74228 3.90754 3.93884 4.12681
4.24689 4.40936 4.51378 4.67005 4.79810 4.87047 4.97596 5.04361
5.06966 5.21959 5.40923 5.52162 5.60156 5.60556 5.78913 5.81784
6.62082 6.71356 7.17738 7.32069 7.51333 8.81774
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.033077 B = 0.002676 C = 0.002515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 846.309368 B =10459.859609 C =11130.462588
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.209 4.209
3 C 0.128 3.872
4 N -0.455 5.455
5 C 0.193 3.807
6 C -0.064 4.064
7 N -0.333 5.333
8 N -0.327 5.327
9 C 0.134 3.866
10 S 0.074 5.926
11 C -0.129 4.129
12 C 0.519 3.481
13 O -0.582 6.582
14 N -0.696 5.696
15 C 0.266 3.734
16 C -0.556 4.556
17 H 0.083 0.917
18 C 0.006 3.994
19 N -0.929 5.929
20 Si 0.983 3.017
21 H -0.255 1.255
22 H -0.279 1.279
23 H -0.278 1.278
24 H 0.129 0.871
25 H 0.113 0.887
26 H 0.097 0.903
27 H 0.140 0.860
28 H 0.104 0.896
29 H 0.107 0.893
30 H 0.105 0.895
31 H 0.100 0.900
32 H 0.138 0.862
33 H 0.137 0.863
34 H 0.412 0.588
35 H -0.005 1.005
36 H -0.005 1.005
37 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.184 10.496 8.364 29.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.228 4.228
3 C 0.007 3.993
4 N -0.149 5.149
5 C -0.077 4.077
6 C -0.123 4.123
7 N -0.173 5.173
8 N -0.171 5.171
9 C -0.242 4.242
10 S 0.301 5.699
11 C -0.281 4.281
12 C 0.304 3.696
13 O -0.464 6.464
14 N -0.346 5.346
15 C 0.143 3.857
16 C -0.594 4.594
17 H 0.101 0.899
18 C -0.194 4.194
19 N -0.568 5.568
20 Si 0.807 3.193
21 H -0.178 1.178
22 H -0.204 1.204
23 H -0.204 1.204
24 H 0.147 0.853
25 H 0.131 0.869
26 H 0.115 0.885
27 H 0.158 0.842
28 H 0.123 0.877
29 H 0.125 0.875
30 H 0.123 0.877
31 H 0.119 0.881
32 H 0.156 0.844
33 H 0.155 0.845
34 H 0.248 0.752
35 H 0.012 0.988
36 H 0.013 0.987
37 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -25.720 10.088 7.474 28.620
hybrid contribution 0.953 -0.283 0.465 1.098
sum -24.767 9.805 7.939 27.795
Atomic orbital electron populations
1.24233 0.94439 1.04303 0.94063 1.22961 0.97151 0.97121 1.05557
1.21399 0.91911 0.99229 0.86717 1.46712 1.09444 1.46367 1.12374
1.26009 1.00084 1.00316 0.81283 1.20509 0.86498 1.01863 1.03430
1.73840 0.98768 1.18083 1.26643 1.74567 1.24482 1.18355 0.99654
1.27192 0.88648 1.06892 1.01420 1.86136 1.05450 1.74581 1.03744
1.23596 0.94932 1.07822 1.01755 1.20093 0.83071 0.78525 0.87953
1.90687 1.77046 1.56300 1.22338 1.46093 1.11122 1.61151 1.16239
1.18652 0.87608 0.91447 0.87957 1.21634 0.96224 1.42789 0.98770
0.89856 1.26021 1.03622 0.94474 0.95315 1.70126 1.34552 1.42395
1.09689 0.85128 0.77396 0.77824 0.78991 1.17841 1.20434 1.20404
0.85268 0.86871 0.88526 0.84203 0.87750 0.87489 0.87690 0.88108
0.84409 0.84498 0.75217 0.98753 0.98733 0.92184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.83 14.32 67.78 0.97 0.14 16
2 C -0.21 -2.52 9.85 25.65 0.25 -2.27 16
3 C 0.13 1.57 6.19 85.63 0.53 2.10 16
4 N -0.46 -9.38 2.80 -517.16 -1.45 -10.83 16
5 C 0.19 3.99 8.07 137.63 1.11 5.10 16
6 C -0.06 -0.55 10.09 71.24 0.72 0.17 16
7 N -0.33 -9.85 12.18 -49.52 -0.60 -10.45 16
8 N -0.33 -10.44 11.60 -56.86 -0.66 -11.10 16
9 C 0.13 3.71 8.07 179.55 1.45 5.16 16
10 S 0.07 2.13 20.94 -56.49 -1.18 0.95 16
11 C -0.13 -3.89 5.72 71.23 0.41 -3.48 16
12 C 0.52 20.71 7.85 87.66 0.69 21.40 16
13 O -0.58 -27.96 15.86 -3.03 -0.05 -28.01 16
14 N -0.70 -29.33 5.55 -466.80 -2.59 -31.92 16
15 C 0.27 14.42 5.43 85.63 0.46 14.88 16
16 C -0.56 -30.12 9.28 25.60 0.24 -29.89 16
17 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16
18 C 0.01 0.30 5.46 84.66 0.46 0.77 16
19 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16
20 Si 0.98 42.44 29.54 68.60 2.03 44.47 16
21 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16
22 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16
23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16
24 H 0.13 0.11 7.84 -2.91 -0.02 0.09 16
25 H 0.11 0.62 8.06 -2.91 -0.02 0.60 16
26 H 0.10 1.64 8.06 -2.91 -0.02 1.61 16
27 H 0.14 0.64 7.53 -2.38 -0.02 0.62 16
28 H 0.10 1.38 7.86 -2.38 -0.02 1.36 16
29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16
30 H 0.10 0.33 7.92 -2.39 -0.02 0.31 16
31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.14 3.72 8.14 -2.40 -0.02 3.70 16
33 H 0.14 3.72 8.14 -2.40 -0.02 3.70 16
34 H 0.41 14.46 8.32 -92.71 -0.77 13.69 16
35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16
36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16
Total: -1.00 -78.68 343.73 3.39 -75.30
By element:
Atomic # 1 Polarization: 12.56 SS G_CDS: 0.31 Total: 12.88 kcal
Atomic # 6 Polarization: 6.79 SS G_CDS: 7.29 Total: 14.08 kcal
Atomic # 7 Polarization: -114.64 SS G_CDS: -5.01 Total: -119.65 kcal
Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.01 kcal
Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal
Atomic # 16 Polarization: 2.13 SS G_CDS: -1.18 Total: 0.95 kcal
Total: -78.68 3.39 -75.30 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000006909309.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.967 kcal
(2) G-P(sol) polarization free energy of solvation -78.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds