Wall clock time and date at job start Tue Mar 31 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99640 * 2 1 4 4 H 1.48503 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47230 * 299.99941 * 3 2 1 6 6 H 1.48497 * 109.47260 * 60.00018 * 3 2 1 7 7 C 1.37875 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99739 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99932 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99650 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99759 * 179.97438 * 11 10 9 14 14 O 1.45201 * 109.46882 * 179.97438 * 13 11 10 15 15 C 1.34767 * 117.00373 * 180.02562 * 14 13 11 16 16 O 1.21522 * 119.99406 * 359.97438 * 15 14 13 17 17 C 1.47378 * 120.00506 * 180.02562 * 15 14 13 18 18 C 1.39839 * 120.06726 * 0.22190 * 17 15 14 19 19 C 1.37619 * 119.96544 * 180.27959 * 18 17 15 20 20 C 1.39162 * 120.09847 * 359.49480 * 19 18 17 21 21 N 1.39160 * 119.92849 * 180.23782 * 20 19 18 22 22 C 1.39399 * 120.13949 * 0.25297 * 20 19 18 23 23 F 1.35096 * 119.98537 * 180.02562 * 22 20 19 24 24 C 1.37771 * 120.03268 * 0.02562 * 22 20 19 25 25 H 0.97000 * 120.00358 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47073 * 60.00161 * 9 7 2 27 27 H 1.08995 * 109.47132 * 299.99914 * 9 7 2 28 28 H 0.96996 * 120.00196 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.46952 * 60.00293 * 13 11 10 30 30 H 1.08995 * 109.47300 * 299.99648 * 13 11 10 31 31 H 1.08003 * 120.01802 * 0.05567 * 18 17 15 32 32 H 1.08002 * 119.95379 * 179.77629 * 19 18 17 33 33 H 0.96997 * 119.99975 * 359.97438 * 21 20 19 34 34 H 0.97004 * 119.99562 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.04996 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 6 1.7541 -4.8833 0.0033 12 8 0.5617 -5.1049 0.0035 13 6 2.7334 -6.0286 0.0038 14 8 2.0075 -7.2862 0.0050 15 6 2.7415 -8.4164 0.0061 16 8 3.9550 -8.3527 0.0055 17 6 2.0725 -9.7296 0.0068 18 6 0.6761 -9.8046 0.0017 19 6 0.0536 -11.0319 0.0082 20 6 0.8117 -12.1989 0.0092 21 7 0.1785 -13.4381 0.0108 22 6 2.2039 -12.1292 0.0090 23 9 2.9368 -13.2641 0.0095 24 6 2.8329 -10.9035 0.0083 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5575 -0.8880 27 1 0.6249 -2.5563 0.8919 28 1 3.1569 -3.4353 0.0029 29 1 3.3601 -5.9704 0.8937 30 1 3.3600 -5.9713 -0.8863 31 1 0.0865 -8.8997 -0.0037 32 1 -1.0249 -11.0895 0.0079 33 1 -0.7902 -13.4878 0.0116 34 1 0.7059 -14.2522 0.0119 35 1 3.9115 -10.8491 0.0085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054413782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:39 Heat of formation + Delta-G solvation = -144.640860 kcal Electronic energy + Delta-G solvation = -22056.245417 eV Core-core repulsion = 18161.641996 eV Total energy + Delta-G solvation = -3894.603421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.15711 -40.65399 -39.29321 -38.56055 -36.31899 -35.11019 -34.24489 -32.41085 -31.02603 -30.06774 -28.79381 -26.65093 -24.13227 -23.19682 -22.56375 -21.10876 -19.93339 -18.60132 -18.04285 -17.52926 -17.32164 -16.64919 -16.58144 -16.03257 -15.95332 -15.50398 -15.35279 -15.08881 -14.59325 -14.32996 -14.26937 -13.67736 -13.28467 -13.06385 -12.88820 -12.66330 -12.50068 -12.00551 -11.77638 -11.67635 -11.18922 -10.99075 -10.94357 -10.67237 -10.65604 -10.34776 -9.42412 -9.29584 -9.17630 -8.78862 -8.11943 -7.98742 -6.20025 -4.27210 0.46911 0.85940 2.35398 2.39905 3.17888 3.18308 3.22446 3.29768 3.32795 3.40611 3.81569 3.99725 4.32741 4.36132 4.65968 4.73212 4.86721 5.12402 5.16323 5.20543 5.26612 5.35457 5.49188 5.68990 5.75545 5.97142 6.26275 6.33774 6.78257 7.07184 7.22600 7.31077 7.45699 7.59726 7.70940 7.91719 8.50227 8.71217 8.96573 9.39272 10.90140 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.045474 B = 0.002303 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.585960 B =12154.044883 C =12749.183826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.325 6.325 15 C 0.514 3.486 16 O -0.514 6.514 17 C -0.160 4.160 18 C -0.011 4.011 19 C -0.190 4.190 20 C 0.226 3.774 21 N -0.861 5.861 22 C 0.000 4.000 23 F -0.140 7.140 24 C -0.036 4.036 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.407 0.593 34 H 0.405 0.595 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -25.548 0.016 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.027 4.027 14 O -0.240 6.240 15 C 0.360 3.640 16 O -0.404 6.404 17 C -0.164 4.164 18 C -0.030 4.030 19 C -0.213 4.213 20 C 0.117 3.883 21 N -0.399 5.399 22 C -0.024 4.024 23 F -0.119 7.119 24 C -0.056 4.056 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.236 0.764 34 H 0.234 0.766 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.845 -25.528 0.015 25.594 hybrid contribution 1.011 0.537 0.001 1.144 sum 2.855 -24.991 0.016 25.154 Atomic orbital electron populations 1.69981 1.06112 1.27295 1.48822 1.24956 0.94938 0.99511 0.94632 0.86336 0.79831 0.82834 0.77764 1.19598 1.20783 1.20776 1.21250 0.93385 0.90293 1.53325 0.91697 1.19179 0.88172 0.81553 0.98031 1.46364 1.11538 1.05356 1.72425 1.19880 0.89107 0.83978 0.78709 1.90698 1.16322 1.84572 1.49643 1.22872 0.94385 0.80773 1.04710 1.86588 1.39868 1.13818 1.83708 1.20926 0.85485 0.84861 0.72765 1.90840 1.14792 1.88025 1.46714 1.18543 0.93534 0.89545 1.14731 1.21451 0.93120 0.98580 0.89854 1.20525 1.00185 0.89927 1.10690 1.18037 0.90070 0.87677 0.92527 1.42387 1.10027 1.04801 1.82662 1.16760 0.87112 0.82594 1.15940 1.91461 1.76854 1.48468 1.95120 1.20947 1.01424 0.89128 0.94096 0.92434 0.95234 0.95246 0.77395 0.88411 0.88403 0.83004 0.84104 0.76379 0.76599 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 10 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 11 C 0.50 9.86 7.91 -10.99 -0.09 9.77 16 12 O -0.53 -12.75 16.50 -14.10 -0.23 -12.98 16 13 C 0.05 0.76 5.95 36.00 0.21 0.97 16 14 O -0.32 -5.08 8.99 -47.36 -0.43 -5.51 16 15 C 0.51 7.31 7.89 34.45 0.27 7.59 16 16 O -0.51 -8.08 16.13 -19.28 -0.31 -8.40 16 17 C -0.16 -1.87 5.87 -104.97 -0.62 -2.49 16 18 C -0.01 -0.11 9.60 -39.21 -0.38 -0.49 16 19 C -0.19 -1.49 9.87 -39.46 -0.39 -1.88 16 20 C 0.23 1.78 6.76 -83.76 -0.57 1.22 16 21 N -0.86 -4.18 9.06 32.45 0.29 -3.88 16 22 C 0.00 0.00 7.30 -39.32 -0.29 -0.29 16 23 F -0.14 -1.35 16.62 2.25 0.04 -1.32 16 24 C -0.04 -0.38 9.56 -39.14 -0.37 -0.76 16 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.41 1.04 8.83 -40.82 -0.36 0.68 16 34 H 0.40 1.64 8.29 -40.82 -0.34 1.30 16 35 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -33.76 325.07 -6.51 -40.27 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.49 Total: 4.14 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.66 Total: 6.94 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.69 Total: -43.62 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.97 Total: -26.89 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.76 -6.51 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054413782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.375 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds