Wall clock time and date at job start Tue Mar 31 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48504 * 109.46858 * 240.00207 * 3 2 1 5 5 H 1.48498 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47081 * 120.00576 * 3 2 1 7 7 C 1.38945 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00130 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00023 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00023 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47037 * 180.02562 * 12 10 9 14 14 C 1.47439 * 111.00045 * 290.12992 * 13 12 10 15 15 C 1.54322 * 107.36952 * 236.65966 * 14 13 12 16 16 C 1.55398 * 102.90031 * 337.89642 * 15 14 13 17 17 C 1.47843 * 110.99640 * 169.28284 * 13 12 10 18 18 H 1.09001 * 110.37314 * 27.42672 * 17 13 12 19 19 C 1.52997 * 110.37646 * 265.19412 * 17 13 12 20 20 H 1.09003 * 109.47260 * 55.00218 * 19 17 13 21 21 O 1.42900 * 109.47128 * 295.00110 * 19 17 13 22 22 C 1.53000 * 109.47258 * 175.00671 * 19 17 13 23 23 F 1.39898 * 109.47689 * 59.99633 * 22 19 17 24 24 F 1.39902 * 109.47406 * 180.02562 * 22 19 17 25 25 F 1.39907 * 109.46806 * 299.99819 * 22 19 17 26 26 H 0.96992 * 120.00394 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99510 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46848 * 60.00669 * 12 10 9 29 29 H 1.08996 * 109.46914 * 300.00584 * 12 10 9 30 30 H 1.09002 * 109.88998 * 356.14887 * 14 13 12 31 31 H 1.09003 * 109.88733 * 117.17548 * 14 13 12 32 32 H 1.09005 * 110.70342 * 96.18020 * 15 14 13 33 33 H 1.08997 * 110.70605 * 219.41644 * 15 14 13 34 34 H 1.08995 * 110.87020 * 277.39488 * 16 15 14 35 35 H 1.08997 * 111.05714 * 153.64720 * 16 15 14 36 36 H 0.96698 * 114.00661 * 300.00154 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0010 13 7 2.1986 -5.9795 -0.0017 14 6 2.9010 -6.0732 -1.2947 15 6 2.6575 -7.4926 -1.8494 16 6 2.3010 -8.3068 -0.5747 17 6 1.5123 -7.2635 0.2555 18 1 0.4763 -7.2138 -0.0799 19 6 1.5731 -7.6112 1.7442 20 1 1.1648 -6.7856 2.3271 21 8 2.9316 -7.8373 2.1254 22 6 0.7527 -8.8757 2.0065 23 9 1.2767 -9.9353 1.2584 24 9 0.8078 -9.1933 3.3679 25 9 -0.5774 -8.6543 1.6333 26 1 -0.4850 0.8399 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6163 -4.9205 -0.8904 29 1 0.6182 -4.9208 0.8896 30 1 2.5037 -5.3312 -1.9872 31 1 3.9689 -5.9101 -1.1492 32 1 1.8246 -7.4939 -2.5525 33 1 3.5604 -7.8829 -2.3190 34 1 3.2031 -8.6218 -0.0502 35 1 1.6748 -9.1645 -0.8203 36 1 3.3597 -8.5598 1.6459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109758809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:22 Heat of formation + Delta-G solvation = -252.980571 kcal Electronic energy + Delta-G solvation = -25092.390995 eV Core-core repulsion = 20774.693177 eV Total energy + Delta-G solvation = -4317.697819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.17786 -48.67739 -48.65555 -40.97767 -39.60506 -37.56710 -35.91193 -33.41792 -32.91562 -31.93221 -28.40335 -28.29872 -26.07540 -24.32449 -22.42227 -21.53632 -20.94374 -19.92723 -19.62515 -19.43038 -19.20757 -17.94915 -17.59745 -16.87291 -16.47973 -16.25539 -15.94591 -15.64215 -15.48561 -15.29198 -15.20867 -15.07945 -14.82271 -14.78840 -14.70752 -14.45098 -13.92690 -13.67569 -13.55510 -13.23821 -12.95349 -12.90199 -12.42618 -12.35839 -12.14437 -12.06893 -12.04530 -11.62665 -11.47648 -11.42020 -10.31856 -9.99615 -9.26525 -8.45465 -5.94034 1.40123 1.41866 1.52111 1.54605 2.07085 2.27861 2.45212 2.69720 2.91555 2.98833 3.21150 3.36747 3.43126 3.46832 3.62342 3.93301 4.00565 4.18983 4.23900 4.32552 4.40241 4.50119 4.62454 4.78431 4.91928 5.00469 5.07953 5.30822 5.41600 5.83833 5.98065 6.07200 6.44410 6.62037 7.14390 7.57813 8.14057 8.71814 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.025041 B = 0.003733 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.883055 B = 7498.750022 C = 7965.765389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.050 3.950 13 N -0.509 5.509 14 C 0.057 3.943 15 C -0.129 4.129 16 C -0.124 4.124 17 C 0.034 3.966 18 H 0.090 0.910 19 C 0.091 3.909 20 H 0.135 0.865 21 O -0.529 6.529 22 C 0.430 3.570 23 F -0.175 7.175 24 F -0.184 7.184 25 F -0.180 7.180 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -19.949 -0.716 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.081 4.081 13 N -0.233 5.233 14 C -0.071 4.071 15 C -0.167 4.167 16 C -0.162 4.162 17 C -0.074 4.074 18 H 0.108 0.892 19 C 0.029 3.971 20 H 0.153 0.847 21 O -0.338 6.338 22 C 0.375 3.625 23 F -0.157 7.157 24 F -0.165 7.165 25 F -0.162 7.162 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.917 -19.222 0.073 19.244 hybrid contribution -0.801 0.446 -0.781 1.204 sum -1.718 -18.777 -0.708 18.869 Atomic orbital electron populations 1.69659 1.06794 1.29307 1.50464 1.25997 0.96511 1.02293 0.96337 0.85016 0.77782 0.76799 0.78909 1.19709 1.19479 1.19833 1.19600 0.92632 0.84031 1.49918 0.90439 1.41920 1.09264 1.04679 1.65493 1.20727 0.88310 0.85849 0.82211 1.90502 1.15673 1.87836 1.55921 1.21990 0.93702 0.88985 1.03472 1.62810 1.26155 1.00993 1.33378 1.22640 0.99194 0.97237 0.87982 1.22827 1.03316 0.93079 0.97518 1.22947 1.00842 0.97002 0.95388 1.23281 0.99727 0.90896 0.93524 0.89228 1.22991 0.83483 0.92370 0.98302 0.84736 1.86778 1.22281 1.58517 1.66190 1.21522 0.79385 0.87471 0.74150 1.93172 1.86125 1.60183 1.76186 1.93200 1.96232 1.93937 1.33136 1.93197 1.37066 1.94702 1.91203 0.91333 0.77066 0.90889 0.87497 0.94560 0.92279 0.90175 0.88807 0.89379 0.87734 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.58 -29.54 5.29 -306.98 -1.62 -31.17 16 10 C 0.44 20.97 7.43 87.66 0.65 21.62 16 11 O -0.61 -34.05 15.12 -3.08 -0.05 -34.09 16 12 C 0.05 1.67 5.03 85.56 0.43 2.10 16 13 N -0.51 -15.49 4.47 -865.16 -3.87 -19.36 16 14 C 0.06 1.68 5.64 86.65 0.49 2.17 16 15 C -0.13 -2.41 6.97 31.87 0.22 -2.19 16 16 C -0.12 -2.01 4.99 32.07 0.16 -1.85 16 17 C 0.03 0.73 2.17 45.39 0.10 0.83 16 18 H 0.09 1.68 7.32 -2.39 -0.02 1.66 16 19 C 0.09 1.92 3.12 30.59 0.10 2.02 16 20 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 21 O -0.53 -12.26 13.13 -148.98 -1.96 -14.21 16 22 C 0.43 8.07 2.85 71.98 0.21 8.28 16 23 F -0.18 -2.87 14.39 44.97 0.65 -2.22 16 24 F -0.18 -3.98 17.26 44.97 0.78 -3.21 16 25 F -0.18 -3.48 16.71 44.97 0.75 -2.73 16 26 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.40 19.23 7.90 -92.71 -0.73 18.49 16 28 H 0.07 2.16 7.96 -2.39 -0.02 2.14 16 29 H 0.11 3.15 8.07 -2.39 -0.02 3.13 16 30 H 0.04 1.20 7.31 -2.39 -0.02 1.18 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.28 5.89 -2.39 -0.01 1.26 16 35 H 0.10 1.29 7.16 -2.39 -0.02 1.28 16 36 H 0.39 6.24 6.42 -74.06 -0.48 5.76 16 Total: -1.00 -68.89 309.75 0.56 -68.33 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.06 Total: 28.29 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 3.63 Total: 14.71 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -5.21 Total: -100.00 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.00 Total: -48.31 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 2.17 Total: -8.16 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.89 0.56 -68.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109758809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.650 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds