Wall clock time and date at job start Tue Mar 31 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 117.00404 * 2 1 4 4 C 1.38757 * 120.05092 * 359.95827 * 3 2 1 5 5 C 1.38117 * 119.94453 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05842 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.11000 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05029 * 359.95650 * 7 6 5 9 9 S 1.76200 * 120.02428 * 180.02562 * 8 7 6 10 10 O 1.42101 * 106.40474 * 228.53798 * 9 8 7 11 11 O 1.42098 * 106.40537 * 1.46276 * 9 8 7 12 12 N 1.65600 * 107.21816 * 114.99991 * 9 8 7 13 13 C 1.36940 * 120.00071 * 269.99930 * 12 9 8 14 14 H 1.08001 * 119.99961 * 6.72510 * 13 12 9 15 15 C 1.38810 * 119.99803 * 186.72229 * 13 12 9 16 16 N 1.31619 * 120.00544 * 26.58062 * 15 13 12 17 17 Si 1.86803 * 119.99764 * 206.57869 * 15 13 12 18 18 H 1.48503 * 109.47269 * 90.00204 * 17 15 13 19 19 H 1.48497 * 109.47342 * 210.00002 * 17 15 13 20 20 H 1.48504 * 109.47148 * 330.00234 * 17 15 13 21 21 C 1.46502 * 119.99971 * 89.99903 * 12 9 8 22 22 C 1.47202 * 109.46971 * 93.06271 * 21 12 9 23 23 N 5.11089 * 119.24545 * 166.24091 * 2 1 3 24 24 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47366 * 300.00506 * 1 2 3 26 26 H 1.09006 * 109.46786 * 59.99972 * 1 2 3 27 27 H 1.08005 * 120.02979 * 0.03441 * 4 3 2 28 28 H 1.08002 * 119.97584 * 180.29550 * 5 4 3 29 29 H 1.07995 * 119.95095 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.97942 * 179.97438 * 7 6 5 31 31 H 0.96994 * 120.00158 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.47041 * 213.06281 * 21 12 9 33 33 H 1.08995 * 109.47201 * 333.06090 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9208 3.6047 -0.0014 6 6 3.3019 3.6759 -0.0016 7 6 4.0560 2.5172 -0.0018 8 6 3.4311 1.2849 -0.0009 9 16 4.3929 -0.1915 -0.0005 10 8 3.8553 -1.0210 -1.0214 11 8 5.7537 0.2161 0.0336 12 7 4.1009 -0.9663 1.4336 13 6 4.8809 -0.6997 2.5271 14 1 5.6146 0.0919 2.4871 15 6 4.7287 -1.4469 3.6870 16 7 4.2704 -2.6790 3.6209 17 14 5.1742 -0.7038 5.3419 18 1 3.9840 -0.0275 5.9175 19 1 5.6259 -1.7785 6.2618 20 1 6.2670 0.2856 5.1622 21 6 3.0081 -1.9370 1.5325 22 6 3.5266 -3.2885 1.2653 23 7 3.9259 -4.3315 1.0606 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2128 2.3204 -0.0010 28 1 1.3340 4.5114 0.0027 29 1 3.7922 4.6381 -0.0016 30 1 5.1345 2.5752 -0.0024 31 1 4.1643 -3.2011 4.4314 32 1 2.5816 -1.9031 2.5350 33 1 2.2376 -1.6924 0.8015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195527467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:51 Heat of formation + Delta-G solvation = -52.317323 kcal Electronic energy + Delta-G solvation = -22534.201684 eV Core-core repulsion = 19073.981793 eV Total energy + Delta-G solvation = -3460.219891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.12565 -38.60801 -38.19950 -37.93271 -36.71384 -36.20141 -33.24358 -32.33538 -31.09827 -29.09928 -28.11830 -25.80179 -24.20703 -23.13197 -20.44746 -19.87303 -19.59427 -18.63603 -18.16432 -17.54865 -17.16849 -16.67713 -16.34898 -16.04378 -15.74781 -15.40142 -15.30199 -14.87436 -14.48140 -14.08752 -13.74062 -13.50855 -13.31361 -13.21836 -13.14372 -12.98401 -12.91938 -12.68218 -12.64008 -12.42721 -12.16474 -12.05572 -11.90743 -11.78599 -11.58998 -11.18885 -10.32360 -10.06929 -9.32468 -8.19698 -5.79405 -0.39087 -0.02503 0.43446 1.51496 1.54307 1.64152 1.96779 2.20453 2.39899 2.46639 2.59688 2.76868 2.92600 3.13541 3.51235 3.78372 3.90900 4.02624 4.26742 4.40589 4.42908 4.50410 4.52430 4.64271 4.82775 4.86550 4.93487 5.14050 5.28929 5.31638 5.44442 5.66547 5.78976 6.30244 6.46058 7.01092 7.14630 7.37933 8.85475 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.007770 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.941708 B = 3602.545338 C = 4102.059433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.336 6.336 3 C 0.210 3.790 4 C -0.225 4.225 5 C -0.023 4.023 6 C -0.177 4.177 7 C -0.010 4.010 8 C -0.715 4.715 9 S 2.685 3.315 10 O -0.994 6.994 11 O -1.000 7.000 12 N -0.861 5.861 13 C -0.343 4.343 14 H 0.106 0.894 15 C 0.005 3.995 16 N -0.905 5.905 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.246 3.754 22 C 0.264 3.736 23 N -0.524 5.524 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.267 0.733 32 H 0.126 0.874 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 15.770 -3.608 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.249 6.249 3 C 0.162 3.838 4 C -0.244 4.244 5 C -0.041 4.041 6 C -0.196 4.196 7 C -0.029 4.029 8 C -0.805 4.805 9 S 2.781 3.219 10 O -0.984 6.984 11 O -0.990 6.990 12 N -0.693 5.693 13 C -0.471 4.471 14 H 0.124 0.876 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.222 1.222 20 H -0.194 1.194 21 C 0.117 3.883 22 C -0.054 4.054 23 N -0.206 5.206 24 H 0.137 0.863 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.586 13.606 -4.467 18.421 hybrid contribution 0.019 0.553 1.267 1.382 sum -11.567 14.159 -3.200 18.561 Atomic orbital electron populations 1.23589 0.74878 1.06444 1.03464 1.86088 1.25188 1.26562 1.87061 1.18556 0.90002 0.86254 0.89033 1.21714 1.01847 0.91363 1.09517 1.21747 0.94542 0.98322 0.89474 1.21552 0.94844 0.98499 1.04687 1.21012 1.00928 0.90703 0.90296 1.29965 1.05220 1.19182 1.26168 1.01440 0.73353 0.74722 0.72426 1.93484 1.80884 1.67354 1.56726 1.93425 1.34403 1.84222 1.86996 1.52910 1.40492 1.49440 1.26445 1.19397 1.19296 1.18510 0.89891 0.87636 1.25657 0.97894 0.94333 1.01791 1.70042 1.48291 1.06932 1.29232 0.85251 0.78900 0.77797 0.78281 1.18771 1.22201 1.19395 1.18731 0.87955 0.76544 1.05106 1.30035 0.92020 0.95216 0.88096 1.80747 1.09681 1.14913 1.15286 0.86259 0.90035 0.90325 0.81188 0.80743 0.81996 0.84325 0.92242 0.85677 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -9.72 6.45 -83.20 -0.54 -10.25 16 3 C 0.21 6.22 6.63 22.50 0.15 6.37 16 4 C -0.23 -4.56 9.04 22.37 0.20 -4.36 16 5 C -0.02 -0.39 10.04 22.25 0.22 -0.17 16 6 C -0.18 -3.74 10.04 22.28 0.22 -3.52 16 7 C -0.01 -0.30 9.55 22.26 0.21 -0.09 16 8 C -0.71 -25.48 5.92 22.36 0.13 -25.35 16 9 S 2.68 122.31 5.20 -56.49 -0.29 122.01 16 10 O -0.99 -48.20 16.31 -122.92 -2.00 -50.20 16 11 O -1.00 -50.30 15.84 -128.00 -2.03 -52.33 16 12 N -0.86 -41.40 2.88 -352.51 -1.02 -42.42 16 13 C -0.34 -17.56 9.37 84.03 0.79 -16.77 16 14 H 0.11 5.43 7.41 -2.91 -0.02 5.40 16 15 C 0.00 0.25 4.88 84.86 0.41 0.66 16 16 N -0.90 -47.84 9.06 21.65 0.20 -47.64 16 17 Si 0.97 40.37 29.63 68.60 2.03 42.40 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.30 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 C 0.25 11.01 4.93 84.57 0.42 11.43 16 22 C 0.26 13.64 13.34 89.45 1.19 14.83 16 23 N -0.52 -28.88 18.53 20.00 0.37 -28.51 16 24 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 26 H 0.08 0.95 7.66 -2.38 -0.02 0.93 16 27 H 0.17 2.08 6.30 -2.91 -0.02 2.06 16 28 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.14 4.25 7.33 -2.91 -0.02 4.22 16 31 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 32 H 0.13 5.49 6.45 -2.39 -0.02 5.47 16 33 H 0.12 4.67 4.83 -2.39 -0.01 4.66 16 Total: -1.00 -75.38 299.00 2.95 -72.43 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.16 Total: 10.20 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.07 Total: -15.70 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -0.45 Total: -118.57 kcal Atomic # 8 Polarization: -108.21 SS G_CDS: -4.57 Total: -112.78 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 122.31 SS G_CDS: -0.29 Total: 122.01 kcal Total: -75.38 2.95 -72.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195527467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.110 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds