Wall clock time and date at job start Tue Mar 31 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47440 * 2 1 4 4 N 1.30118 * 121.06388 * 270.01791 * 3 2 1 5 5 S 1.69949 * 105.76580 * 179.97438 * 4 3 2 6 6 C 1.72297 * 94.57468 * 0.02562 * 5 4 3 7 7 N 1.38311 * 127.50794 * 180.02562 * 6 5 4 8 8 C 1.46894 * 111.00614 * 124.27025 * 7 6 5 9 9 C 1.53236 * 109.34397 * 172.74755 * 8 7 6 10 10 N 1.47082 * 108.52057 * 53.83141 * 9 8 7 11 11 C 1.34776 * 120.88005 * 128.83661 * 10 9 8 12 12 O 1.21691 * 119.99793 * 174.80697 * 11 10 9 13 13 C 1.46372 * 120.00246 * 354.81258 * 11 10 9 14 14 H 1.08000 * 119.99630 * 351.62480 * 13 11 10 15 15 C 1.40046 * 120.00071 * 171.61757 * 13 11 10 16 16 N 1.30668 * 120.00111 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47040 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47136 * 120.00407 * 17 15 13 20 20 H 1.48496 * 109.47486 * 240.00827 * 17 15 13 21 21 C 1.47077 * 118.23604 * 308.81654 * 10 9 8 22 22 C 1.46904 * 110.99534 * 359.97108 * 7 6 5 23 23 N 1.31290 * 121.05681 * 90.00403 * 3 2 1 24 24 H 1.09003 * 109.46663 * 59.99607 * 1 2 3 25 25 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 300.00472 * 1 2 3 27 27 H 1.09000 * 109.47100 * 239.99527 * 2 1 3 28 28 H 1.09003 * 109.46663 * 120.00393 * 2 1 3 29 29 H 1.08997 * 109.49656 * 292.71170 * 8 7 6 30 30 H 1.09005 * 109.48753 * 52.78787 * 8 7 6 31 31 H 1.09003 * 109.63018 * 294.12315 * 9 8 7 32 32 H 1.08998 * 109.63299 * 173.54388 * 9 8 7 33 33 H 0.96998 * 120.00131 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.63258 * 291.47278 * 21 10 9 35 35 H 1.09006 * 109.62673 * 170.89183 * 21 10 9 36 36 H 1.09001 * 109.49250 * 307.21628 * 22 7 6 37 37 H 1.08998 * 109.49216 * 67.27328 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2559 2.0539 -1.1146 5 16 2.8019 3.5996 -0.6662 6 6 2.6960 3.2970 1.0267 7 7 3.0027 4.1657 2.0583 8 6 1.8595 4.3301 2.9659 9 6 2.2934 5.1500 4.1855 10 7 2.8982 6.4049 3.7137 11 6 2.4909 7.5944 4.1992 12 8 3.0652 8.6152 3.8689 13 6 1.3579 7.6585 5.1237 14 1 0.7641 6.7763 5.3119 15 6 1.0441 8.8637 5.7642 16 7 1.7623 9.9312 5.5361 17 14 -0.4023 8.9456 6.9435 18 1 -1.0488 7.6113 7.0274 19 1 0.0788 9.3476 8.2897 20 1 -1.3865 9.9428 6.4514 21 6 3.9595 6.3273 2.6984 22 6 3.4599 5.4610 1.5372 23 7 2.2583 2.0593 1.1247 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.0542 4.8494 2.4463 30 1 1.5101 3.3503 3.2918 31 1 3.0248 4.5861 4.7645 32 1 1.4247 5.3725 4.8052 33 1 1.5447 10.7660 5.9795 34 1 4.8510 5.8765 3.1344 35 1 4.1922 7.3282 2.3348 36 1 4.2713 5.3015 0.8271 37 1 2.6325 5.9644 1.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274204228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:02 Heat of formation + Delta-G solvation = 31.127413 kcal Electronic energy + Delta-G solvation = -21499.802087 eV Core-core repulsion = 18211.326478 eV Total energy + Delta-G solvation = -3288.475610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55162 -39.19809 -36.95014 -34.19180 -33.04844 -32.61951 -31.36132 -30.93861 -27.69625 -26.24162 -25.19142 -23.65779 -22.66198 -21.19092 -19.60832 -19.37651 -18.68708 -17.27445 -16.47025 -15.73936 -15.56124 -14.87555 -14.86153 -14.69954 -14.40901 -14.28052 -14.11891 -13.79362 -12.77418 -12.68678 -12.37367 -12.20580 -11.95950 -11.77170 -11.56205 -11.34508 -11.32825 -11.24014 -11.08862 -10.98565 -10.93609 -10.71339 -10.31788 -10.17614 -9.76549 -9.44489 -8.97690 -8.51674 -7.74972 -7.47557 -6.32526 -4.77807 0.41953 1.00324 1.65320 2.48880 2.97467 3.05932 3.14815 3.18227 3.96778 4.12721 4.31999 4.42522 4.80076 4.87130 5.01142 5.02766 5.10335 5.20529 5.34745 5.44561 5.45982 5.57353 5.59326 5.68130 5.72318 5.79580 5.90883 5.97673 6.20040 6.26657 6.42162 6.48303 6.57127 7.33161 7.36246 7.59824 7.95095 8.18036 8.90164 9.23851 10.42335 10.61239 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.003719 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.990060 B = 7527.758821 C = 8278.353833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C 0.290 3.710 4 N -0.494 5.494 5 S 0.174 5.826 6 C 0.285 3.715 7 N -0.424 5.424 8 C 0.049 3.951 9 C 0.126 3.874 10 N -0.647 5.647 11 C 0.560 3.440 12 O -0.574 6.574 13 C -0.545 4.545 14 H 0.074 0.926 15 C 0.088 3.912 16 N -0.766 5.766 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.128 3.872 22 C 0.030 3.970 23 N -0.542 5.542 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.270 0.730 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -15.519 -7.834 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C 0.000 4.000 4 N -0.326 5.326 5 S 0.312 5.688 6 C -0.093 4.093 7 N -0.144 5.144 8 C -0.079 4.079 9 C 0.001 3.999 10 N -0.386 5.386 11 C 0.367 3.633 12 O -0.456 6.456 13 C -0.581 4.581 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.003 3.997 22 C -0.098 4.098 23 N -0.272 5.272 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.288 -14.625 -8.879 17.111 hybrid contribution -1.221 -0.252 0.975 1.583 sum -1.509 -14.877 -7.903 16.913 Atomic orbital electron populations 1.21709 0.93430 1.02522 1.02669 1.20184 0.96745 0.86490 1.04312 1.23372 0.95072 0.99216 0.82381 1.77472 1.26765 1.02361 1.25957 1.85129 1.63000 1.18733 1.01945 1.27235 0.92995 0.93336 0.95781 1.58010 1.32939 1.11390 1.12064 1.22936 0.88673 1.02319 0.93982 1.21608 0.99796 0.85072 0.93448 1.48394 1.39648 1.06622 1.43934 1.18296 0.84175 0.80089 0.80781 1.90605 1.59520 1.33046 1.62448 1.20960 1.13303 0.96761 1.27091 0.90790 1.25722 0.96483 0.94995 0.96006 1.69997 1.34614 1.00302 1.34568 0.86318 0.81267 0.79143 0.80100 1.18667 1.20066 1.20099 1.21205 0.91234 0.99461 0.87756 1.23104 1.01187 0.86195 0.99329 1.67365 1.24530 1.05674 1.29584 0.92374 0.91302 0.92000 0.89251 0.88806 0.92357 0.88401 0.92357 0.87347 0.91953 0.92379 0.88200 0.89150 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.03 -0.33 6.47 -27.88 -0.18 -0.51 16 3 C 0.29 3.89 6.82 -159.04 -1.08 2.80 16 4 N -0.49 -7.09 12.15 29.53 0.36 -6.74 16 5 S 0.17 2.38 22.15 -107.50 -2.38 -0.01 16 6 C 0.28 4.15 7.02 -86.35 -0.61 3.55 16 7 N -0.42 -6.27 4.69 -174.24 -0.82 -7.09 16 8 C 0.05 0.72 5.55 -3.71 -0.02 0.70 16 9 C 0.13 2.14 6.52 -3.60 -0.02 2.12 16 10 N -0.65 -13.52 3.01 -174.12 -0.52 -14.05 16 11 C 0.56 14.92 7.61 -12.99 -0.10 14.82 16 12 O -0.57 -17.56 14.55 5.20 0.08 -17.49 16 13 C -0.54 -14.32 8.84 -35.63 -0.32 -14.63 16 14 H 0.07 1.75 5.74 -52.49 -0.30 1.45 16 15 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 16 N -0.77 -21.98 11.86 55.55 0.66 -21.32 16 17 Si 0.91 19.11 29.56 -169.99 -5.02 14.09 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.13 2.27 6.58 -3.60 -0.02 2.24 16 22 C 0.03 0.43 4.76 -3.70 -0.02 0.42 16 23 N -0.54 -7.94 10.35 -14.59 -0.15 -8.09 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.33 7.89 -51.93 -0.41 0.92 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 1.89 5.39 -51.93 -0.28 1.61 16 33 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.93 7.10 -51.93 -0.37 1.56 16 36 H 0.09 1.11 7.52 -51.93 -0.39 0.72 16 37 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -32.78 320.37 -9.76 -42.54 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.69 Total: 0.43 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -2.10 Total: 12.89 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.47 Total: -57.29 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.08 Total: -17.49 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.38 Total: -0.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.78 -9.76 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274204228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.672 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds