Wall clock time and date at job start Tue Mar 31 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47440 * 2 1 4 4 N 1.30118 * 121.06388 * 270.01791 * 3 2 1 5 5 S 1.69949 * 105.76580 * 179.97438 * 4 3 2 6 6 C 1.72297 * 94.57468 * 0.02562 * 5 4 3 7 7 N 1.38311 * 127.50794 * 180.02562 * 6 5 4 8 8 C 1.46894 * 111.00614 * 124.27025 * 7 6 5 9 9 C 1.53236 * 109.34397 * 172.74755 * 8 7 6 10 10 N 1.47082 * 108.52057 * 53.83141 * 9 8 7 11 11 C 1.34776 * 120.88005 * 128.83661 * 10 9 8 12 12 O 1.21691 * 119.99793 * 174.80697 * 11 10 9 13 13 C 1.46372 * 120.00246 * 354.81258 * 11 10 9 14 14 H 1.08000 * 119.99630 * 351.62480 * 13 11 10 15 15 C 1.40046 * 120.00071 * 171.61757 * 13 11 10 16 16 N 1.30668 * 120.00111 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47040 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47136 * 120.00407 * 17 15 13 20 20 H 1.48496 * 109.47486 * 240.00827 * 17 15 13 21 21 C 1.47077 * 118.23604 * 308.81654 * 10 9 8 22 22 C 1.46904 * 110.99534 * 359.97108 * 7 6 5 23 23 N 1.31290 * 121.05681 * 90.00403 * 3 2 1 24 24 H 1.09003 * 109.46663 * 59.99607 * 1 2 3 25 25 H 1.08993 * 109.47565 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 300.00472 * 1 2 3 27 27 H 1.09000 * 109.47100 * 239.99527 * 2 1 3 28 28 H 1.09003 * 109.46663 * 120.00393 * 2 1 3 29 29 H 1.08997 * 109.49656 * 292.71170 * 8 7 6 30 30 H 1.09005 * 109.48753 * 52.78787 * 8 7 6 31 31 H 1.09003 * 109.63018 * 294.12315 * 9 8 7 32 32 H 1.08998 * 109.63299 * 173.54388 * 9 8 7 33 33 H 0.96998 * 120.00131 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.63258 * 291.47278 * 21 10 9 35 35 H 1.09006 * 109.62673 * 170.89183 * 21 10 9 36 36 H 1.09001 * 109.49250 * 307.21628 * 22 7 6 37 37 H 1.08998 * 109.49216 * 67.27328 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2559 2.0539 -1.1146 5 16 2.8019 3.5996 -0.6662 6 6 2.6960 3.2970 1.0267 7 7 3.0027 4.1657 2.0583 8 6 1.8595 4.3301 2.9659 9 6 2.2934 5.1500 4.1855 10 7 2.8982 6.4049 3.7137 11 6 2.4909 7.5944 4.1992 12 8 3.0652 8.6152 3.8689 13 6 1.3579 7.6585 5.1237 14 1 0.7641 6.7763 5.3119 15 6 1.0441 8.8637 5.7642 16 7 1.7623 9.9312 5.5361 17 14 -0.4023 8.9456 6.9435 18 1 -1.0488 7.6113 7.0274 19 1 0.0788 9.3476 8.2897 20 1 -1.3865 9.9428 6.4514 21 6 3.9595 6.3273 2.6984 22 6 3.4599 5.4610 1.5372 23 7 2.2583 2.0593 1.1247 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.0542 4.8494 2.4463 30 1 1.5101 3.3503 3.2918 31 1 3.0248 4.5861 4.7645 32 1 1.4247 5.3725 4.8052 33 1 1.5447 10.7660 5.9795 34 1 4.8510 5.8765 3.1344 35 1 4.1922 7.3282 2.3348 36 1 4.2713 5.3015 0.8271 37 1 2.6325 5.9644 1.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274204228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:57 Heat of formation + Delta-G solvation = 8.633065 kcal Electronic energy + Delta-G solvation = -21500.777515 eV Core-core repulsion = 18211.326478 eV Total energy + Delta-G solvation = -3289.451038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.67221 -40.56720 -38.68540 -35.67907 -34.65397 -34.02845 -32.55782 -32.19773 -29.30715 -27.90679 -26.21106 -25.03192 -23.78364 -22.65238 -20.94172 -20.61503 -19.89618 -18.76526 -18.11110 -17.33871 -16.84544 -16.31246 -16.05129 -15.99131 -15.84634 -15.71868 -15.13770 -14.93759 -14.46928 -13.79319 -13.62725 -13.47386 -13.31227 -13.17038 -12.87069 -12.80414 -12.76122 -12.42828 -12.38057 -12.29422 -12.08332 -11.99976 -11.94209 -11.78172 -10.94737 -10.88298 -10.53683 -9.81800 -9.67058 -9.20224 -8.30012 -6.83858 -0.68547 -0.09993 0.59675 1.41394 1.42586 1.43642 1.59514 1.83522 2.23988 2.45545 2.73315 3.10493 3.51706 3.69885 3.79095 3.92335 4.08607 4.11357 4.21367 4.25527 4.32568 4.38989 4.54340 4.58455 4.71988 4.83994 4.87616 4.98434 5.01721 5.04033 5.25301 5.29931 5.39242 5.40316 5.68668 6.09557 6.32273 6.52422 6.88811 7.35430 8.43846 8.66107 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.003719 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.990060 B = 7527.758821 C = 8278.353833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C 0.286 3.714 4 N -0.511 5.511 5 S 0.188 5.812 6 C 0.276 3.724 7 N -0.427 5.427 8 C 0.060 3.940 9 C 0.126 3.874 10 N -0.649 5.649 11 C 0.545 3.455 12 O -0.628 6.628 13 C -0.567 4.567 14 H 0.097 0.903 15 C 0.031 3.969 16 N -0.822 5.822 17 Si 0.992 3.008 18 H -0.243 1.243 19 H -0.270 1.270 20 H -0.273 1.273 21 C 0.127 3.873 22 C 0.042 3.958 23 N -0.551 5.551 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.274 0.726 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -18.102 -7.681 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.004 4.004 4 N -0.342 5.342 5 S 0.326 5.674 6 C -0.102 4.102 7 N -0.147 5.147 8 C -0.068 4.068 9 C 0.002 3.998 10 N -0.387 5.387 11 C 0.352 3.648 12 O -0.514 6.514 13 C -0.603 4.603 14 H 0.115 0.885 15 C -0.184 4.184 16 N -0.452 5.452 17 Si 0.812 3.188 18 H -0.165 1.165 19 H -0.195 1.195 20 H -0.198 1.198 21 C 0.003 3.997 22 C -0.086 4.086 23 N -0.280 5.280 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.526 -17.288 -8.751 19.436 hybrid contribution -0.775 0.454 0.839 1.228 sum -2.301 -16.834 -7.913 18.742 Atomic orbital electron populations 1.21684 0.92513 1.03933 1.01655 1.20408 0.97374 0.84379 1.05595 1.24016 0.94192 1.00445 0.81723 1.77487 1.27482 1.02671 1.26587 1.85059 1.62714 1.18653 1.00960 1.27185 0.93511 0.93440 0.96103 1.57954 1.33071 1.11236 1.12398 1.22782 0.88449 1.02569 0.92963 1.21727 0.99804 0.83624 0.94617 1.48205 1.39983 1.06497 1.43976 1.18633 0.84338 0.80926 0.80930 1.90558 1.61089 1.35489 1.64297 1.21502 1.13734 0.97968 1.27085 0.88489 1.26932 0.99545 0.94229 0.97709 1.70167 1.37230 1.01337 1.36471 0.85044 0.76795 0.79961 0.77016 1.16542 1.19531 1.19829 1.21273 0.91054 0.99172 0.88161 1.22934 1.01818 0.85715 0.98098 1.67427 1.24576 1.05662 1.30337 0.93310 0.88709 0.93019 0.87862 0.87587 0.93021 0.86594 0.90954 0.87793 0.91612 0.91057 0.90493 0.86571 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.90 71.98 0.71 -1.28 16 2 C -0.04 -0.58 6.47 29.85 0.19 -0.39 16 3 C 0.29 7.06 6.82 139.40 0.95 8.01 16 4 N -0.51 -13.74 12.15 -60.47 -0.73 -14.48 16 5 S 0.19 4.83 22.15 -56.49 -1.25 3.58 16 6 C 0.28 7.52 7.02 178.86 1.26 8.77 16 7 N -0.43 -11.86 4.69 -705.16 -3.30 -15.17 16 8 C 0.06 1.68 5.55 86.38 0.48 2.16 16 9 C 0.13 4.15 6.52 86.35 0.56 4.71 16 10 N -0.65 -27.34 3.01 -823.01 -2.48 -29.82 16 11 C 0.55 29.86 7.61 86.36 0.66 30.52 16 12 O -0.63 -40.19 14.55 -4.32 -0.06 -40.26 16 13 C -0.57 -30.03 8.84 24.83 0.22 -29.81 16 14 H 0.10 4.50 5.74 -2.91 -0.02 4.49 16 15 C 0.03 1.66 5.50 85.30 0.47 2.13 16 16 N -0.82 -48.68 11.86 21.83 0.26 -48.42 16 17 Si 0.99 39.00 29.56 68.60 2.03 41.03 16 18 H -0.24 -8.64 7.11 99.48 0.71 -7.94 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 C 0.13 4.53 6.58 86.35 0.57 5.10 16 22 C 0.04 1.19 4.76 86.38 0.41 1.60 16 23 N -0.55 -14.93 10.35 -200.06 -2.07 -17.00 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.12 2.86 7.89 -2.38 -0.02 2.84 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 3.50 5.39 -2.39 -0.01 3.49 16 33 H 0.27 14.72 8.29 -92.71 -0.77 13.95 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 3.11 7.10 -2.38 -0.02 3.09 16 36 H 0.12 2.67 7.52 -2.39 -0.02 2.65 16 37 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 Total: -1.00 -72.78 320.37 -0.04 -72.82 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.09 Total: 16.21 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 6.48 Total: 31.51 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -8.33 Total: -124.89 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.06 Total: -40.26 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.25 Total: 3.58 kcal Total: -72.78 -0.04 -72.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274204228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.451 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds