Wall clock time and date at job start Tue Mar 31 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46932 * 241.64787 * 3 2 1 5 5 C 1.36932 * 120.00158 * 273.02121 * 4 3 2 6 6 H 1.08004 * 119.99837 * 187.48527 * 5 4 3 7 7 C 1.38813 * 120.00255 * 7.47742 * 5 4 3 8 8 N 1.31618 * 119.99688 * 27.07129 * 7 5 4 9 9 Si 1.86795 * 120.00421 * 207.06599 * 7 5 4 10 10 H 1.48504 * 109.46844 * 90.00510 * 9 7 5 11 11 H 1.48493 * 109.47418 * 210.00306 * 9 7 5 12 12 H 1.48499 * 109.47276 * 330.00638 * 9 7 5 13 13 S 1.65605 * 119.99761 * 93.02237 * 4 3 2 14 14 O 1.42099 * 106.40020 * 336.45864 * 13 4 3 15 15 O 1.42095 * 106.39870 * 203.54185 * 13 4 3 16 16 C 1.76191 * 107.21927 * 89.99856 * 13 4 3 17 17 C 1.38826 * 120.35761 * 89.99765 * 16 13 4 18 18 C 1.38373 * 118.48782 * 180.02562 * 17 16 13 19 19 C 1.38919 * 119.11414 * 0.02562 * 18 17 16 20 20 O 1.35676 * 119.68554 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99842 * 179.97438 * 20 19 18 22 22 N 1.32253 * 120.62754 * 359.96837 * 19 18 17 23 23 C 1.31954 * 121.64544 * 0.05588 * 22 19 18 24 24 H 4.40637 * 5.51349 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46981 * 121.65066 * 3 2 1 26 26 H 1.08997 * 109.47222 * 1.65082 * 3 2 1 27 27 H 0.96999 * 120.00310 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.75747 * 0.02562 * 17 16 13 29 29 H 1.08007 * 120.44193 * 179.72664 * 18 17 16 30 30 H 1.08998 * 109.46964 * 179.97438 * 21 20 19 31 31 H 1.08996 * 109.47614 * 300.00288 * 21 20 19 32 32 H 1.09005 * 109.47147 * 60.00295 * 21 20 19 33 33 H 1.08008 * 119.58074 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6568 1.2156 5 6 3.3027 2.0155 1.2397 6 1 3.7747 2.4861 2.0895 7 6 2.8672 2.7880 0.1717 8 7 1.8694 2.3709 -0.5785 9 14 3.6971 4.4196 -0.2006 10 1 4.8240 4.1982 -1.1421 11 1 2.7133 5.3465 -0.8154 12 1 4.2140 5.0110 1.0597 13 16 3.4817 -0.2447 2.5605 14 8 2.7240 -1.4416 2.4481 15 8 3.3824 0.6365 3.6708 16 6 5.1757 -0.7159 2.4490 17 6 6.1659 0.0925 2.9906 18 6 7.4838 -0.3146 2.8805 19 6 7.7700 -1.5111 2.2351 20 8 9.0582 -1.9211 2.1201 21 6 9.2868 -3.1604 1.4463 22 7 6.7987 -2.2543 1.7319 23 6 5.5329 -1.8922 1.8209 24 1 -1.0501 0.0000 -0.0003 25 1 3.0091 0.5401 -0.8748 26 1 3.0098 -1.0264 -0.0296 27 1 1.5648 2.9109 -1.3245 28 1 5.9134 1.0181 3.4866 29 1 8.2798 0.2921 3.2866 30 1 10.3563 -3.3697 1.4237 31 1 8.7704 -3.9619 1.9744 32 1 8.9083 -3.0946 0.4262 33 1 4.7664 -2.5246 1.3976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282087608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:15 Heat of formation + Delta-G solvation = 9.109807 kcal Electronic energy + Delta-G solvation = -21741.708569 eV Core-core repulsion = 18284.152359 eV Total energy + Delta-G solvation = -3457.556210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.51931 -37.89295 -36.38949 -36.18568 -34.90780 -32.44236 -31.81418 -31.06134 -30.76457 -27.41385 -26.49862 -23.88574 -23.63116 -23.06379 -18.76865 -18.49588 -17.97769 -17.58031 -17.05258 -16.55537 -16.21264 -16.08149 -14.70722 -14.56459 -14.46661 -14.19053 -13.69952 -13.46847 -13.38323 -13.16143 -12.84224 -12.47749 -12.02110 -11.74951 -11.38343 -11.35800 -11.19743 -10.98909 -10.95197 -10.64911 -10.50442 -10.21835 -9.95280 -9.73661 -9.48543 -9.13132 -8.75113 -8.70704 -8.20097 -6.32728 -3.85991 0.88761 1.28585 1.34291 2.97513 3.17438 3.26184 3.27614 3.58734 3.87574 4.16452 4.28602 4.32447 4.49370 4.67123 4.87066 4.98752 5.03747 5.13667 5.18292 5.19529 5.44740 5.53061 5.64967 5.78505 5.80680 6.08214 6.14952 6.45099 6.70590 6.99208 7.10730 7.25914 7.49395 7.75838 8.27923 8.82858 9.04837 9.19850 10.64152 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.005915 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.383957 B = 4732.434605 C = 5429.043078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.097 4.097 3 C 0.251 3.749 4 N -0.833 5.833 5 C -0.325 4.325 6 H 0.113 0.887 7 C 0.049 3.951 8 N -0.840 5.840 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 S 2.655 3.345 14 O -0.974 6.974 15 O -0.962 6.962 16 C -0.759 4.759 17 C 0.057 3.943 18 C -0.212 4.212 19 C 0.349 3.651 20 O -0.308 6.308 21 C 0.038 3.962 22 N -0.556 5.556 23 C 0.231 3.769 24 H 0.197 0.803 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -6.377 0.889 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.100 4.100 3 C 0.125 3.875 4 N -0.664 5.664 5 C -0.457 4.457 6 H 0.130 0.870 7 C -0.160 4.160 8 N -0.478 5.478 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.193 1.193 13 S 2.742 3.258 14 O -0.964 6.964 15 O -0.952 6.952 16 C -0.842 4.842 17 C 0.032 3.968 18 C -0.234 4.234 19 C 0.170 3.830 20 O -0.214 6.214 21 C -0.057 4.057 22 N -0.280 5.280 23 C 0.073 3.927 24 H 0.214 0.786 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.648 -7.282 1.138 12.141 hybrid contribution 0.661 1.495 -0.450 1.696 sum 10.309 -5.786 0.688 11.842 Atomic orbital electron populations 1.24165 0.95290 1.06623 1.02281 1.22847 0.94077 0.94869 0.98230 1.17795 0.84982 0.94256 0.90442 1.53307 1.70345 1.14881 1.27820 1.19262 1.40907 0.79439 1.06123 0.86957 1.25043 0.95064 0.99163 0.96697 1.70222 1.19805 1.39178 1.18574 0.86358 0.79579 0.82329 0.79078 1.20439 1.21102 1.19341 1.04011 0.74749 0.72671 0.74341 1.93493 1.68625 1.47339 1.86971 1.93467 1.86271 1.65049 1.50425 1.32947 1.30558 1.06119 1.14531 1.21178 0.90416 0.96669 0.88580 1.21132 0.98230 0.97200 1.06798 1.20044 0.84174 0.89721 0.89030 1.86246 1.21419 1.40463 1.73303 1.22888 1.01782 0.83715 0.97307 1.67377 1.01689 1.34770 1.24149 1.22164 0.91429 0.91123 0.87977 0.78552 0.87869 0.92011 0.92022 0.82564 0.83675 0.88657 0.92143 0.92055 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.81 19.25 29.55 0.57 -5.24 16 2 C -0.10 -2.29 11.20 -37.12 -0.42 -2.70 16 3 C 0.25 5.51 5.10 -6.83 -0.03 5.48 16 4 N -0.83 -19.15 2.88 -62.77 -0.18 -19.33 16 5 C -0.32 -7.97 9.36 -15.06 -0.14 -8.12 16 6 H 0.11 2.71 7.43 -52.48 -0.39 2.32 16 7 C 0.05 1.19 4.86 -17.43 -0.08 1.10 16 8 N -0.84 -21.14 9.10 55.49 0.50 -20.64 16 9 Si 0.90 19.04 29.63 -169.99 -5.04 14.01 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 13 S 2.65 56.52 5.61 -107.50 -0.60 55.91 16 14 O -0.97 -21.74 16.31 -57.17 -0.93 -22.67 16 15 O -0.96 -22.65 16.24 -57.17 -0.93 -23.58 16 16 C -0.76 -13.69 5.99 -39.43 -0.24 -13.93 16 17 C 0.06 0.94 9.64 -39.31 -0.38 0.56 16 18 C -0.21 -3.14 10.04 -39.28 -0.39 -3.54 16 19 C 0.35 5.40 7.49 -17.12 -0.13 5.27 16 20 O -0.31 -4.16 10.48 -18.73 -0.20 -4.35 16 21 C 0.04 0.39 10.38 101.05 1.05 1.44 16 22 N -0.56 -9.02 9.22 -13.33 -0.12 -9.14 16 23 C 0.23 3.87 10.68 -17.57 -0.19 3.69 16 24 H 0.20 3.54 7.80 -54.09 -0.42 3.12 16 25 H 0.10 2.31 6.52 -51.93 -0.34 1.97 16 26 H 0.06 1.15 7.68 -51.93 -0.40 0.76 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.16 2.37 7.71 -52.48 -0.40 1.96 16 29 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.17 2.57 7.62 -52.48 -0.40 2.17 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -30.72 310.24 -6.38 -37.10 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.18 Total: 4.00 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.38 Total: -15.99 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.20 Total: -49.10 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.06 Total: -50.60 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.04 Total: 14.01 kcal Atomic # 16 Polarization: 56.52 SS G_CDS: -0.60 Total: 55.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.72 -6.38 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282087608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.205 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds