Wall clock time and date at job start Tue Mar 31 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46932 * 241.64787 * 3 2 1 5 5 C 1.36932 * 120.00158 * 273.02121 * 4 3 2 6 6 H 1.08004 * 119.99837 * 187.48527 * 5 4 3 7 7 C 1.38813 * 120.00255 * 7.47742 * 5 4 3 8 8 N 1.31618 * 119.99688 * 27.07129 * 7 5 4 9 9 Si 1.86795 * 120.00421 * 207.06599 * 7 5 4 10 10 H 1.48504 * 109.46844 * 90.00510 * 9 7 5 11 11 H 1.48493 * 109.47418 * 210.00306 * 9 7 5 12 12 H 1.48499 * 109.47276 * 330.00638 * 9 7 5 13 13 S 1.65605 * 119.99761 * 93.02237 * 4 3 2 14 14 O 1.42099 * 106.40020 * 336.45864 * 13 4 3 15 15 O 1.42095 * 106.39870 * 203.54185 * 13 4 3 16 16 C 1.76191 * 107.21927 * 89.99856 * 13 4 3 17 17 C 1.38826 * 120.35761 * 89.99765 * 16 13 4 18 18 C 1.38373 * 118.48782 * 180.02562 * 17 16 13 19 19 C 1.38919 * 119.11414 * 0.02562 * 18 17 16 20 20 O 1.35676 * 119.68554 * 179.97438 * 19 18 17 21 21 C 1.42901 * 116.99842 * 179.97438 * 20 19 18 22 22 N 1.32253 * 120.62754 * 359.96837 * 19 18 17 23 23 C 1.31954 * 121.64544 * 0.05588 * 22 19 18 24 24 H 4.40637 * 5.51349 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46981 * 121.65066 * 3 2 1 26 26 H 1.08997 * 109.47222 * 1.65082 * 3 2 1 27 27 H 0.96999 * 120.00310 * 179.97438 * 8 7 5 28 28 H 1.08004 * 120.75747 * 0.02562 * 17 16 13 29 29 H 1.08007 * 120.44193 * 179.72664 * 18 17 16 30 30 H 1.08998 * 109.46964 * 179.97438 * 21 20 19 31 31 H 1.08996 * 109.47614 * 300.00288 * 21 20 19 32 32 H 1.09005 * 109.47147 * 60.00295 * 21 20 19 33 33 H 1.08008 * 119.58074 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6568 1.2156 5 6 3.3027 2.0155 1.2397 6 1 3.7747 2.4861 2.0895 7 6 2.8672 2.7880 0.1717 8 7 1.8694 2.3709 -0.5785 9 14 3.6971 4.4196 -0.2006 10 1 4.8240 4.1982 -1.1421 11 1 2.7133 5.3465 -0.8154 12 1 4.2140 5.0110 1.0597 13 16 3.4817 -0.2447 2.5605 14 8 2.7240 -1.4416 2.4481 15 8 3.3824 0.6365 3.6708 16 6 5.1757 -0.7159 2.4490 17 6 6.1659 0.0925 2.9906 18 6 7.4838 -0.3146 2.8805 19 6 7.7700 -1.5111 2.2351 20 8 9.0582 -1.9211 2.1201 21 6 9.2868 -3.1604 1.4463 22 7 6.7987 -2.2543 1.7319 23 6 5.5329 -1.8922 1.8209 24 1 -1.0501 0.0000 -0.0003 25 1 3.0091 0.5401 -0.8748 26 1 3.0098 -1.0264 -0.0296 27 1 1.5648 2.9109 -1.3245 28 1 5.9134 1.0181 3.4866 29 1 8.2798 0.2921 3.2866 30 1 10.3563 -3.3697 1.4237 31 1 8.7704 -3.9619 1.9744 32 1 8.9083 -3.0946 0.4262 33 1 4.7664 -2.5246 1.3976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282087608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:14 Heat of formation + Delta-G solvation = -13.599339 kcal Electronic energy + Delta-G solvation = -21742.693312 eV Core-core repulsion = 18284.152359 eV Total energy + Delta-G solvation = -3458.540953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.73984 -39.03614 -38.19694 -37.89148 -36.74515 -33.73420 -33.54568 -32.78141 -32.05303 -28.36433 -28.20613 -25.62498 -24.96382 -24.31820 -20.47679 -19.75171 -19.61015 -19.17570 -18.36205 -18.21415 -17.88702 -17.14580 -16.39758 -16.14046 -15.75380 -15.39563 -15.25499 -15.03964 -14.68968 -14.59235 -14.19293 -14.16723 -13.47628 -13.17804 -13.03915 -12.86973 -12.76194 -12.66631 -12.40145 -12.24513 -12.18372 -11.94250 -11.42359 -11.20241 -10.92127 -10.84031 -10.47589 -10.01909 -9.90611 -8.06342 -5.71906 -0.53996 -0.27596 0.04153 1.50014 1.53616 1.61654 1.91055 2.03689 2.41655 2.44429 2.57490 2.78275 2.94614 3.09674 3.19995 3.37925 3.81728 3.92663 4.01325 4.09674 4.39994 4.40481 4.44281 4.53372 4.57514 4.74454 4.81701 5.00335 5.20813 5.31955 5.58422 5.72758 5.97058 6.48852 6.50237 7.08935 7.31893 7.42765 8.90947 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.005915 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.383957 B = 4732.434605 C = 5429.043078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.137 4.137 3 C 0.252 3.748 4 N -0.860 5.860 5 C -0.351 4.351 6 H 0.107 0.893 7 C 0.006 3.994 8 N -0.880 5.880 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.266 1.266 13 S 2.696 3.304 14 O -0.990 6.990 15 O -0.991 6.991 16 C -0.765 4.765 17 C 0.050 3.950 18 C -0.205 4.205 19 C 0.351 3.649 20 O -0.306 6.306 21 C 0.030 3.970 22 N -0.558 5.558 23 C 0.233 3.767 24 H 0.228 0.772 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.263 0.737 28 H 0.166 0.834 29 H 0.179 0.821 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 -7.386 1.404 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.140 4.140 3 C 0.127 3.873 4 N -0.692 5.692 5 C -0.479 4.479 6 H 0.124 0.876 7 C -0.197 4.197 8 N -0.518 5.518 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.191 1.191 13 S 2.788 3.212 14 O -0.980 6.980 15 O -0.981 6.981 16 C -0.854 4.854 17 C 0.024 3.976 18 C -0.226 4.226 19 C 0.172 3.828 20 O -0.212 6.212 21 C -0.064 4.064 22 N -0.283 5.283 23 C 0.075 3.925 24 H 0.244 0.756 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.183 0.817 29 H 0.196 0.804 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.116 -8.213 1.624 14.727 hybrid contribution 0.097 1.495 -0.397 1.550 sum 12.213 -6.718 1.227 13.992 Atomic orbital electron populations 1.25049 0.96445 1.05843 1.01336 1.23641 0.95409 0.95725 0.99227 1.17930 0.84353 0.95375 0.89645 1.52968 1.75094 1.14753 1.26366 1.19309 1.41063 0.80840 1.06713 0.87583 1.25640 0.95381 1.01539 0.97184 1.70337 1.21691 1.40149 1.19647 0.85437 0.78319 0.78950 0.78688 1.19962 1.21897 1.19082 1.01328 0.74824 0.72064 0.72956 1.93482 1.69414 1.48150 1.86972 1.93445 1.87017 1.66117 1.51506 1.31937 1.27126 1.08124 1.18246 1.21397 0.90997 0.96777 0.88381 1.21423 0.98137 0.97172 1.05831 1.20388 0.84830 0.89677 0.87913 1.86272 1.19927 1.41834 1.73170 1.23218 1.04154 0.82239 0.96809 1.67452 1.01362 1.34979 1.24509 1.22404 0.92314 0.90610 0.87186 0.75578 0.88695 0.89341 0.92722 0.81669 0.80350 0.85152 0.92032 0.92206 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.88 19.25 74.32 1.43 -10.45 16 2 C -0.14 -6.57 11.20 31.12 0.35 -6.22 16 3 C 0.25 11.29 5.10 84.57 0.43 11.72 16 4 N -0.86 -40.07 2.88 -352.51 -1.02 -41.08 16 5 C -0.35 -17.59 9.36 84.03 0.79 -16.80 16 6 H 0.11 5.24 7.43 -2.91 -0.02 5.22 16 7 C 0.01 0.31 4.86 84.86 0.41 0.72 16 8 N -0.88 -45.82 9.10 21.65 0.20 -45.62 16 9 Si 0.96 40.12 29.63 68.60 2.03 42.15 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 13 S 2.70 113.97 5.61 -56.49 -0.32 113.65 16 14 O -0.99 -43.62 16.31 -128.00 -2.09 -45.71 16 15 O -0.99 -46.68 16.24 -128.00 -2.08 -48.76 16 16 C -0.76 -26.32 5.99 22.37 0.13 -26.19 16 17 C 0.05 1.53 9.64 22.44 0.22 1.75 16 18 C -0.20 -5.33 10.04 22.47 0.23 -5.11 16 19 C 0.35 9.64 7.49 84.79 0.63 10.28 16 20 O -0.31 -7.08 10.48 -89.93 -0.94 -8.02 16 21 C 0.03 0.50 10.38 113.37 1.18 1.68 16 22 N -0.56 -16.50 9.22 -308.94 -2.85 -19.35 16 23 C 0.23 7.31 10.68 84.63 0.90 8.22 16 24 H 0.23 8.04 7.80 -4.42 -0.03 8.00 16 25 H 0.10 4.40 6.52 -2.39 -0.02 4.39 16 26 H 0.09 3.30 7.68 -2.39 -0.02 3.29 16 27 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 28 H 0.17 4.71 7.71 -2.91 -0.02 4.69 16 29 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 33 H 0.19 5.18 7.62 -2.91 -0.02 5.16 16 Total: -1.00 -66.24 310.24 0.78 -65.46 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.13 Total: 17.68 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 6.70 Total: -30.40 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.67 Total: -106.06 kcal Atomic # 8 Polarization: -97.38 SS G_CDS: -5.11 Total: -102.49 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: 113.97 SS G_CDS: -0.32 Total: 113.65 kcal Total: -66.24 0.78 -65.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282087608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.864 kcal (2) G-P(sol) polarization free energy of solvation -66.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds