Wall clock time and date at job start Tue Mar 31 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.46798 * 305.00460 * 16 15 14 18 18 O 1.42899 * 109.46778 * 64.99968 * 16 15 14 19 19 C 1.52994 * 109.47332 * 184.99999 * 16 15 14 20 20 F 1.39903 * 109.47074 * 60.00014 * 19 16 15 21 21 F 1.39902 * 109.47049 * 180.02562 * 19 16 15 22 22 F 1.39898 * 109.47276 * 299.99987 * 19 16 15 23 23 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 24 24 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 25 25 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 26 26 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 27 27 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 28 28 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 29 29 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 30 30 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 31 31 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 32 32 H 0.96703 * 114.00519 * 60.00468 * 18 16 15 33 33 H 1.08997 * 117.50142 * 359.97438 * 23 9 7 34 34 H 1.09000 * 117.49511 * 145.02011 * 23 9 7 35 35 H 1.08996 * 117.49909 * 214.98045 * 24 9 7 36 36 H 1.09006 * 117.50020 * 359.97109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 1 5.1684 -5.4208 5.3347 18 8 5.2588 -3.5368 6.1780 19 6 4.5527 -5.5001 7.3976 20 9 3.9174 -6.7389 7.2599 21 9 5.8525 -5.6928 7.8779 22 9 3.8359 -4.7061 8.2993 23 6 1.5730 -3.5795 -0.9303 24 6 0.2452 -2.8210 -1.0000 25 1 -0.4850 0.8368 -0.0731 26 1 0.3751 -2.1632 2.0411 27 1 0.3015 -3.8512 1.4812 28 1 3.0164 -3.0733 1.8316 29 1 4.1039 -3.8565 3.7429 30 1 2.6573 -3.9010 6.1682 31 1 2.6643 -5.5462 5.4890 32 1 4.8155 -2.9333 6.7899 33 1 2.3245 -3.3491 -1.6853 34 1 1.5428 -4.6172 -0.5978 35 1 -0.6578 -3.3599 -0.7135 36 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331799372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:49 Heat of formation + Delta-G solvation = -213.313383 kcal Electronic energy + Delta-G solvation = -24070.115979 eV Core-core repulsion = 19754.138259 eV Total energy + Delta-G solvation = -4315.977720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.52470 -48.03668 -47.99579 -39.68366 -38.09552 -36.74618 -34.29931 -33.33301 -31.97799 -30.60098 -26.86196 -25.66794 -24.68944 -22.66833 -21.21458 -20.53318 -19.46466 -19.01588 -18.99906 -18.71243 -17.91531 -16.52769 -16.27411 -15.81924 -15.46508 -14.95650 -14.82956 -14.69417 -14.58289 -14.41564 -14.16296 -14.13611 -14.05812 -13.94069 -13.59849 -13.35559 -12.81799 -12.64736 -11.95651 -11.80325 -11.58867 -11.01488 -10.98168 -10.95767 -10.55070 -10.25552 -9.86404 -9.49694 -9.10645 -9.04148 -8.50636 -8.27683 -8.06421 -6.09049 -4.19015 2.09529 2.89001 3.24155 3.24849 3.32608 3.33664 3.43788 3.51799 3.65239 3.90187 4.19850 4.33304 4.50001 4.75236 5.18813 5.27256 5.33335 5.41599 6.00443 6.32629 6.43708 6.48025 6.55955 6.68795 6.75914 6.80093 7.10400 7.21396 7.36358 7.39337 7.55980 7.79341 8.31982 8.53259 8.82189 9.06290 9.48253 10.98049 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.003324 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.920116 B = 8422.182470 C = 9081.318204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.181 3.819 11 N -0.717 5.717 12 C 0.699 3.301 13 O -0.602 6.602 14 N -0.748 5.748 15 C 0.109 3.891 16 C 0.061 3.939 17 H 0.149 0.851 18 O -0.526 6.526 19 C 0.426 3.574 20 F -0.176 7.176 21 F -0.174 7.174 22 F -0.180 7.180 23 C -0.211 4.211 24 C -0.141 4.141 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.398 0.602 29 H 0.400 0.600 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.391 0.609 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -9.652 11.829 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.369 5.369 12 C 0.399 3.601 13 O -0.481 6.481 14 N -0.406 5.406 15 C -0.017 4.017 16 C -0.001 4.001 17 H 0.167 0.833 18 O -0.332 6.332 19 C 0.371 3.629 20 F -0.157 7.157 21 F -0.156 7.156 22 F -0.161 7.161 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.232 0.768 29 H 0.235 0.765 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.291 -9.970 11.962 18.134 hybrid contribution 0.783 1.200 0.252 1.455 sum 10.074 -8.770 12.214 18.100 Atomic orbital electron populations 1.69986 1.05881 1.26891 1.48261 1.24986 0.94814 0.98962 0.94302 0.86622 0.79913 0.83561 0.78083 1.20711 1.21197 1.19822 1.20336 0.92590 0.88573 1.52270 0.92242 1.19049 0.99441 0.93311 0.85901 1.20893 0.83112 0.97786 0.92426 1.45149 1.11491 1.66269 1.13997 1.15975 0.83558 0.78837 0.81713 1.90894 1.27752 1.60517 1.68918 1.44776 1.08448 1.71299 1.16097 1.21640 0.93383 1.01456 0.85204 1.23416 0.97377 0.87838 0.91459 0.83316 1.86715 1.54069 1.23809 1.68643 1.21397 0.73979 0.78140 0.89379 1.93226 1.82182 1.44402 1.95910 1.93227 1.37354 1.95168 1.89832 1.93207 1.78438 1.73648 1.70854 1.23014 1.00710 0.95586 1.05489 1.22466 0.90809 1.01298 1.03388 0.92858 0.91622 0.94293 0.76812 0.76524 0.90032 0.89494 0.75888 0.90422 0.91724 0.91786 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 12.65 55.43 0.70 -23.22 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.50 -12.58 8.59 -34.44 -0.30 -12.88 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 10 C 0.18 4.03 5.50 -4.04 -0.02 4.01 16 11 N -0.72 -13.39 5.48 -65.22 -0.36 -13.75 16 12 C 0.70 12.58 8.57 -86.91 -0.74 11.84 16 13 O -0.60 -13.21 16.34 5.29 0.09 -13.12 16 14 N -0.75 -9.43 5.51 -65.22 -0.36 -9.79 16 15 C 0.11 1.13 5.07 -4.04 -0.02 1.11 16 16 C 0.06 0.46 3.00 -26.74 -0.08 0.38 16 17 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 18 O -0.53 -4.12 13.23 -35.23 -0.47 -4.59 16 19 C 0.43 3.55 2.85 37.15 0.11 3.66 16 20 F -0.18 -1.61 16.71 2.25 0.04 -1.58 16 21 F -0.17 -1.60 17.26 2.25 0.04 -1.56 16 22 F -0.18 -1.61 16.51 2.25 0.04 -1.57 16 23 C -0.21 -4.30 9.96 -26.69 -0.27 -4.56 16 24 C -0.14 -3.19 9.14 -26.70 -0.24 -3.44 16 25 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 26 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 27 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 28 H 0.40 6.74 8.35 -40.82 -0.34 6.39 16 29 H 0.40 4.12 8.49 -40.82 -0.35 3.78 16 30 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 31 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 32 H 0.39 2.13 8.69 45.56 0.40 2.53 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -30.71 328.35 -5.85 -36.56 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.60 Total: 10.18 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.89 Total: 2.25 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.02 Total: -46.76 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.38 Total: -17.71 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.11 Total: -4.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.71 -5.85 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331799372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.750 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds