Wall clock time and date at job start Tue Mar 31 2020 04:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.46798 * 305.00460 * 16 15 14 18 18 O 1.42899 * 109.46778 * 64.99968 * 16 15 14 19 19 C 1.52994 * 109.47332 * 184.99999 * 16 15 14 20 20 F 1.39903 * 109.47074 * 60.00014 * 19 16 15 21 21 F 1.39902 * 109.47049 * 180.02562 * 19 16 15 22 22 F 1.39898 * 109.47276 * 299.99987 * 19 16 15 23 23 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 24 24 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 25 25 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 26 26 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 27 27 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 28 28 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 29 29 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 30 30 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 31 31 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 32 32 H 0.96703 * 114.00519 * 60.00468 * 18 16 15 33 33 H 1.08997 * 117.50142 * 359.97438 * 23 9 7 34 34 H 1.09000 * 117.49511 * 145.02011 * 23 9 7 35 35 H 1.08996 * 117.49909 * 214.98045 * 24 9 7 36 36 H 1.09006 * 117.50020 * 359.97109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 1 5.1684 -5.4208 5.3347 18 8 5.2588 -3.5368 6.1780 19 6 4.5527 -5.5001 7.3976 20 9 3.9174 -6.7389 7.2599 21 9 5.8525 -5.6928 7.8779 22 9 3.8359 -4.7061 8.2993 23 6 1.5730 -3.5795 -0.9303 24 6 0.2452 -2.8210 -1.0000 25 1 -0.4850 0.8368 -0.0731 26 1 0.3751 -2.1632 2.0411 27 1 0.3015 -3.8512 1.4812 28 1 3.0164 -3.0733 1.8316 29 1 4.1039 -3.8565 3.7429 30 1 2.6573 -3.9010 6.1682 31 1 2.6643 -5.5462 5.4890 32 1 4.8155 -2.9333 6.7899 33 1 2.3245 -3.3491 -1.6853 34 1 1.5428 -4.6172 -0.5978 35 1 -0.6578 -3.3599 -0.7135 36 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331799372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:49 Heat of formation + Delta-G solvation = -237.007053 kcal Electronic energy + Delta-G solvation = -24071.143414 eV Core-core repulsion = 19754.138259 eV Total energy + Delta-G solvation = -4317.005155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.21638 -48.73290 -48.69398 -41.04067 -38.99640 -38.37118 -35.42325 -34.92393 -33.92211 -31.45217 -28.30186 -27.33418 -26.03503 -23.40048 -22.91865 -21.90409 -21.23321 -19.77656 -19.69410 -19.61719 -19.08293 -18.12735 -17.18691 -17.05050 -16.60476 -16.58334 -16.11804 -15.67845 -15.52935 -15.37962 -15.21122 -15.11474 -14.96791 -14.83613 -14.77816 -14.47642 -14.27461 -13.99092 -13.49151 -13.34565 -12.90839 -12.79491 -12.61339 -12.34578 -11.99305 -11.69177 -11.46875 -11.25042 -10.92636 -10.43123 -10.35244 -10.01869 -9.63040 -8.06522 -6.20591 1.30992 1.44189 1.47434 1.54888 1.88495 2.20826 2.44615 2.61305 2.65280 2.79332 3.21719 3.25377 3.39075 3.50746 3.66711 3.84718 4.27485 4.45317 4.55645 4.59365 4.69040 4.77149 5.01629 5.05342 5.31985 5.36353 5.58971 5.64348 5.73745 5.81425 6.09791 6.26198 6.39732 6.87037 7.20051 7.49187 7.64536 9.00366 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.003324 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.920116 B = 8422.182470 C = 9081.318204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.003 3.997 10 C 0.199 3.801 11 N -0.713 5.713 12 C 0.698 3.302 13 O -0.644 6.644 14 N -0.725 5.725 15 C 0.106 3.894 16 C 0.079 3.921 17 H 0.172 0.828 18 O -0.532 6.532 19 C 0.430 3.570 20 F -0.181 7.181 21 F -0.177 7.177 22 F -0.185 7.185 23 C -0.176 4.176 24 C -0.155 4.155 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.408 0.592 29 H 0.415 0.585 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.401 0.599 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -10.298 12.044 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.003 3.997 10 C 0.074 3.926 11 N -0.366 5.366 12 C 0.398 3.602 13 O -0.526 6.526 14 N -0.384 5.384 15 C -0.019 4.019 16 C 0.017 3.983 17 H 0.189 0.811 18 O -0.340 6.340 19 C 0.374 3.626 20 F -0.162 7.162 21 F -0.159 7.159 22 F -0.166 7.166 23 C -0.213 4.213 24 C -0.193 4.193 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.244 0.756 29 H 0.253 0.747 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.578 -10.623 12.191 19.887 hybrid contribution 0.111 1.361 0.232 1.385 sum 11.690 -9.262 12.423 19.410 Atomic orbital electron populations 1.70113 1.07258 1.27241 1.49955 1.25694 0.95443 1.02037 0.94462 0.85696 0.78930 0.79843 0.78009 1.20382 1.22011 1.18726 1.20668 0.92982 0.89475 1.50907 0.91698 1.19072 1.00185 0.93955 0.86527 1.20421 0.84168 0.96117 0.91924 1.44896 1.10769 1.66580 1.14380 1.16105 0.84219 0.78479 0.81419 1.90869 1.29847 1.62170 1.69735 1.44532 1.07486 1.69834 1.16507 1.21763 0.95475 1.00983 0.83725 1.23295 0.95652 0.88111 0.91229 0.81075 1.86706 1.54269 1.23979 1.69023 1.21457 0.73669 0.77916 0.89511 1.93221 1.82273 1.44800 1.95923 1.93223 1.37566 1.95178 1.89890 1.93203 1.78544 1.73726 1.71148 1.22994 0.98796 0.95934 1.03577 1.22389 0.92183 1.01839 1.02886 0.93286 0.95814 0.94525 0.75586 0.74737 0.90666 0.89738 0.74711 0.89671 0.89355 0.91299 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.63 12.65 21.45 0.27 -50.35 16 2 C 0.02 1.26 5.43 84.65 0.46 1.72 16 3 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.50 -24.93 8.59 25.60 0.22 -24.71 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.16 1.47 -52.93 -0.08 0.08 16 10 C 0.20 8.86 5.50 86.38 0.48 9.33 16 11 N -0.71 -25.90 5.48 -478.52 -2.62 -28.52 16 12 C 0.70 24.42 8.57 179.05 1.53 25.95 16 13 O -0.64 -28.27 16.34 -4.00 -0.07 -28.33 16 14 N -0.73 -16.80 5.51 -478.52 -2.64 -19.43 16 15 C 0.11 2.00 5.07 86.38 0.44 2.44 16 16 C 0.08 0.99 3.00 30.59 0.09 1.08 16 17 H 0.17 1.42 8.14 -2.38 -0.02 1.40 16 18 O -0.53 -6.90 13.23 -148.98 -1.97 -8.87 16 19 C 0.43 6.32 2.85 71.98 0.21 6.53 16 20 F -0.18 -3.02 16.71 44.97 0.75 -2.26 16 21 F -0.18 -2.88 17.26 44.97 0.78 -2.11 16 22 F -0.18 -3.03 16.51 44.97 0.74 -2.29 16 23 C -0.18 -6.80 9.96 30.62 0.30 -6.50 16 24 C -0.15 -6.96 9.14 30.62 0.28 -6.68 16 25 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 26 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.63 8.09 -2.38 -0.02 1.61 16 28 H 0.41 13.01 8.35 -92.71 -0.77 12.24 16 29 H 0.42 7.31 8.49 -92.71 -0.79 6.53 16 30 H 0.08 1.56 7.94 -2.39 -0.02 1.55 16 31 H 0.08 1.71 7.66 -2.39 -0.02 1.69 16 32 H 0.40 3.45 8.69 -74.06 -0.64 2.81 16 33 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.07 2.97 8.14 -2.39 -0.02 2.96 16 36 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -65.93 328.35 0.15 -65.78 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -1.05 Total: 23.72 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 3.93 Total: 9.24 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.99 Total: -98.31 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -2.04 Total: -37.20 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 2.27 Total: -6.66 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.93 0.15 -65.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331799372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.225 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds