Wall clock time and date at job start Tue Mar 31 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86793 * 120.00160 * 2 1 4 4 H 1.48504 * 109.46785 * 239.99572 * 3 2 1 5 5 H 1.48503 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47282 * 119.99557 * 3 2 1 7 7 C 1.38955 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99875 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99924 * 180.27132 * 9 7 2 11 11 O 1.21291 * 119.99593 * 359.72154 * 10 9 7 12 12 C 1.50699 * 119.99783 * 179.71791 * 10 9 7 13 13 N 1.46908 * 109.46748 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99929 * 66.22273 * 13 12 10 15 15 C 1.53003 * 109.46778 * 64.23117 * 14 13 12 16 16 F 1.39896 * 109.47359 * 53.93362 * 15 14 13 17 17 F 1.39905 * 109.46981 * 173.93475 * 15 14 13 18 18 F 1.39900 * 109.47223 * 293.92839 * 15 14 13 19 19 C 1.46896 * 110.99764 * 190.17867 * 13 12 10 20 20 H 1.09006 * 110.45923 * 309.01452 * 19 13 12 21 21 C 1.54513 * 110.51299 * 71.62119 * 19 13 12 22 22 C 1.54479 * 104.06111 * 118.64209 * 21 19 13 23 23 O 1.44430 * 104.80729 * 23.98109 * 22 21 19 24 24 C 1.44646 * 105.36525 * 319.56649 * 23 22 21 25 25 H 0.96996 * 119.99901 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00557 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47663 * 299.99741 * 12 10 9 28 28 H 1.09002 * 109.47072 * 60.00712 * 12 10 9 29 29 H 1.09000 * 109.47074 * 184.22649 * 14 13 12 30 30 H 1.08998 * 109.47362 * 304.23223 * 14 13 12 31 31 H 1.08997 * 110.50742 * 237.28417 * 21 19 13 32 32 H 1.08994 * 110.50905 * 359.86003 * 21 19 13 33 33 H 1.09000 * 110.36960 * 142.80886 * 22 21 19 34 34 H 1.08991 * 110.37598 * 265.14577 * 22 21 19 35 35 H 1.09000 * 110.33630 * 281.59176 * 24 23 22 36 36 H 1.08997 * 110.51012 * 159.18268 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0066 11 8 3.2101 -3.5579 0.0069 12 6 1.2435 -4.8629 0.0130 13 7 2.1982 -5.9796 0.0183 14 6 2.9607 -6.0143 1.2733 15 6 2.0103 -6.2915 2.4399 16 9 1.2772 -7.4539 2.1782 17 9 2.7511 -6.4618 3.6145 18 9 1.1338 -5.2120 2.5940 19 6 1.5142 -7.2579 -0.2178 20 1 0.6679 -7.3682 0.4603 21 6 1.0472 -7.3589 -1.6872 22 6 1.8052 -8.5868 -2.2384 23 8 2.1120 -9.3845 -1.0741 24 6 2.4982 -8.4371 -0.0515 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0005 27 1 0.6167 -4.9162 0.9031 28 1 0.6172 -4.9252 -0.8769 29 1 3.7111 -6.8031 1.2208 30 1 3.4531 -5.0540 1.4261 31 1 -0.0295 -7.5215 -1.7354 32 1 1.3217 -6.4592 -2.2378 33 1 1.1712 -9.1470 -2.9257 34 1 2.7228 -8.2742 -2.7367 35 1 3.5227 -8.1020 -0.2130 36 1 2.3948 -8.8808 0.9387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340992407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:41 Heat of formation + Delta-G solvation = -228.275543 kcal Electronic energy + Delta-G solvation = -25773.629085 eV Core-core repulsion = 21457.002557 eV Total energy + Delta-G solvation = -4316.626528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.36318 -48.86569 -48.75707 -40.97512 -39.90546 -37.57412 -35.85948 -33.29909 -32.43244 -30.83891 -29.86817 -27.54792 -25.78103 -24.72472 -23.19240 -21.68134 -21.11457 -19.95396 -19.80820 -19.70634 -18.50547 -17.90937 -17.43551 -17.21951 -16.49925 -16.38779 -16.17378 -15.94261 -15.59409 -15.50056 -15.38390 -15.21730 -15.03012 -14.82867 -14.59336 -14.45580 -13.87314 -13.52471 -13.40150 -13.14168 -13.06704 -12.86245 -12.64855 -12.41945 -12.24759 -12.11444 -12.05251 -11.76443 -11.45338 -10.77840 -10.32997 -10.00341 -9.52797 -8.45449 -5.93961 1.40584 1.43188 1.53557 1.66997 2.03746 2.18568 2.37225 2.70712 2.93778 3.01489 3.06659 3.21690 3.35017 3.57459 3.83120 4.00760 4.06818 4.20895 4.28804 4.35583 4.43359 4.48966 4.57350 4.71598 4.79628 4.86502 4.97423 5.03303 5.42012 5.50161 5.63036 5.91738 6.02952 6.59334 7.12877 7.55845 8.09639 8.71685 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.004749 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.727034 B = 5895.069560 C = 6669.469230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.083 0.917 9 N -0.570 5.570 10 C 0.447 3.553 11 O -0.611 6.611 12 C 0.023 3.977 13 N -0.492 5.492 14 C 0.011 3.989 15 C 0.414 3.586 16 F -0.176 7.176 17 F -0.186 7.186 18 F -0.189 7.189 19 C 0.023 3.977 20 H 0.085 0.915 21 C -0.148 4.148 22 C 0.048 3.952 23 O -0.389 6.389 24 C 0.051 3.949 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -15.470 0.342 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.207 5.207 10 C 0.234 3.766 11 O -0.498 6.498 12 C -0.107 4.107 13 N -0.215 5.215 14 C -0.120 4.120 15 C 0.358 3.642 16 F -0.157 7.157 17 F -0.168 7.168 18 F -0.171 7.171 19 C -0.085 4.085 20 H 0.103 0.897 21 C -0.186 4.186 22 C -0.029 4.029 23 O -0.308 6.308 24 C -0.026 4.026 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.832 -15.488 -0.045 15.510 hybrid contribution -0.932 1.178 0.912 1.757 sum -0.099 -14.310 0.867 14.337 Atomic orbital electron populations 1.69670 1.06888 1.29331 1.50254 1.26024 0.96477 1.02406 0.96282 0.85004 0.77750 0.76729 0.78968 1.19614 1.19757 1.19722 1.19639 0.92787 0.83792 1.49852 0.89905 1.41893 1.09305 1.04718 1.64793 1.20425 0.88188 0.85532 0.82468 1.90451 1.15196 1.87597 1.56540 1.22338 0.94411 0.88540 1.05390 1.61857 1.26629 1.02630 1.30343 1.23997 0.95727 1.08997 0.83254 1.22689 0.81808 0.73651 0.86095 1.93092 1.79257 1.50223 1.93150 1.93173 1.76470 1.95243 1.51886 1.93077 1.71838 1.56429 1.95713 1.23733 0.97626 0.88029 0.99062 0.89705 1.23039 1.01689 0.99871 0.94003 1.23508 0.99432 0.91265 0.88655 1.89126 1.88213 1.30542 1.22920 1.23694 0.97687 0.87994 0.93215 0.91350 0.77164 0.89435 0.86610 0.83755 0.86227 0.88935 0.89938 0.87142 0.91881 0.90842 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.21 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -28.42 5.29 -306.98 -1.62 -30.04 16 10 C 0.45 20.10 7.47 87.66 0.66 20.76 16 11 O -0.61 -31.16 13.92 -3.06 -0.04 -31.20 16 12 C 0.02 0.77 4.88 85.56 0.42 1.19 16 13 N -0.49 -14.18 4.21 -869.55 -3.66 -17.84 16 14 C 0.01 0.30 4.88 86.30 0.42 0.72 16 15 C 0.41 11.23 3.09 71.98 0.22 11.46 16 16 F -0.18 -4.21 11.90 44.97 0.54 -3.67 16 17 F -0.19 -5.04 17.32 44.97 0.78 -4.26 16 18 F -0.19 -6.07 14.10 44.97 0.63 -5.44 16 19 C 0.02 0.53 1.97 45.93 0.09 0.62 16 20 H 0.09 1.96 5.77 -2.38 -0.01 1.95 16 21 C -0.15 -3.02 6.17 31.61 0.19 -2.83 16 22 C 0.05 0.91 7.64 72.48 0.55 1.47 16 23 O -0.39 -9.04 11.65 -148.98 -1.74 -10.78 16 24 C 0.05 1.10 5.73 72.49 0.42 1.51 16 25 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.39 18.96 7.90 -92.71 -0.73 18.23 16 27 H 0.09 2.79 4.95 -2.39 -0.01 2.78 16 28 H 0.12 3.37 6.99 -2.39 -0.02 3.35 16 29 H 0.14 3.13 6.35 -2.39 -0.02 3.12 16 30 H 0.12 4.18 5.84 -2.39 -0.01 4.17 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.87 7.38 -2.39 -0.02 1.85 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.56 7.05 -2.39 -0.02 1.54 16 36 H 0.10 2.02 6.79 -2.39 -0.02 2.00 16 Total: -1.00 -62.84 298.22 1.86 -60.97 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.42 Total: 29.59 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 4.25 Total: 17.27 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.00 Total: -96.72 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.78 Total: -41.98 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 1.95 Total: -13.37 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -62.84 1.86 -60.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340992407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.304 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds