Wall clock time and date at job start Tue Mar 31 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99919 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47154 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99890 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00357 * 179.97438 * 11 10 9 14 14 C 1.37102 * 120.00302 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99816 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99835 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00297 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99561 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47089 * 90.00192 * 18 16 14 20 20 H 1.48502 * 109.46938 * 210.00061 * 18 16 14 21 21 H 1.48494 * 109.47197 * 330.00165 * 18 16 14 22 22 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 23 23 C 1.37891 * 119.88633 * 0.02562 * 22 6 5 24 24 F 1.35099 * 119.98055 * 180.02562 * 23 22 6 25 25 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 27 27 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 28 28 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 29 29 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 30 30 H 0.96994 * 119.99839 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 32 32 H 1.09000 * 109.47623 * 59.99044 * 10 9 7 33 33 H 0.97006 * 120.00033 * 359.97438 * 13 11 10 34 34 H 0.96999 * 119.99804 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.05353 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0610 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8607 8.5227 -0.0385 12 8 1.6817 8.2375 -0.0377 13 7 3.2412 9.8156 -0.0452 14 6 2.2958 10.8085 -0.0506 15 1 1.2461 10.5546 -0.0491 16 6 2.6882 12.1414 -0.0569 17 7 3.9655 12.4504 -0.0582 18 14 1.4000 13.4941 -0.0650 19 1 1.0573 13.8597 1.3329 20 1 1.9375 14.6852 -0.7705 21 1 0.1813 13.0130 -0.7638 22 6 4.0640 2.5078 -0.0062 23 6 3.4352 1.2806 -0.0005 24 9 4.1689 0.1462 0.0056 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2087 2.3146 -0.0062 29 1 1.3171 4.5071 -0.0156 30 1 2.2677 6.0734 -0.0252 31 1 4.5224 7.5274 0.8575 32 1 4.5226 7.5177 -0.9223 33 1 4.1841 10.0437 -0.0454 34 1 4.2394 13.3809 -0.0623 35 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343514277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:49 Heat of formation + Delta-G solvation = -127.819290 kcal Electronic energy + Delta-G solvation = -22390.011406 eV Core-core repulsion = 18496.137423 eV Total energy + Delta-G solvation = -3893.873983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.00114 -40.59513 -39.59697 -38.27703 -37.20506 -34.58114 -33.79197 -31.46400 -31.08025 -30.85700 -28.31050 -27.22922 -24.72803 -23.48993 -22.89518 -20.49429 -19.73751 -18.87021 -18.21904 -17.83261 -17.22716 -16.52255 -16.34863 -15.75951 -15.42159 -15.28972 -15.25777 -15.04521 -14.61524 -14.54484 -14.14399 -13.93370 -13.49985 -13.24621 -12.88148 -12.65196 -12.27402 -12.21082 -12.03278 -11.67149 -11.49268 -11.43772 -11.15648 -10.49232 -10.35996 -9.96505 -9.67895 -9.31868 -8.95157 -8.69388 -8.53116 -8.14720 -6.55485 -3.97748 0.51877 0.81333 2.66133 2.69092 3.08662 3.15395 3.20429 3.26368 3.55634 3.69673 3.89489 4.07427 4.30930 4.55344 4.64769 4.73686 4.74394 4.82692 4.85270 5.06478 5.13062 5.19180 5.48041 5.61908 5.75770 5.86780 5.90220 5.93393 6.01391 6.21316 6.55735 6.82835 7.42143 7.67954 7.87293 8.29853 8.40510 9.00162 9.34459 9.81825 10.61280 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.002650 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.875085 B =10564.658307 C =11421.086400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.118 3.882 4 C -0.190 4.190 5 C -0.050 4.050 6 C -0.138 4.138 7 C 0.559 3.441 8 O -0.543 6.543 9 N -0.700 5.700 10 C 0.108 3.892 11 C 0.427 3.573 12 O -0.599 6.599 13 N -0.547 5.547 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.893 5.893 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.056 4.056 23 C 0.060 3.940 24 F -0.130 7.130 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.410 0.590 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -20.091 0.098 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.071 3.929 4 C -0.208 4.208 5 C -0.069 4.069 6 C -0.142 4.142 7 C 0.346 3.654 8 O -0.422 6.422 9 N -0.354 5.354 10 C -0.019 4.019 11 C 0.213 3.787 12 O -0.486 6.486 13 N -0.182 5.182 14 C -0.435 4.435 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.076 4.076 23 C 0.040 3.960 24 F -0.108 7.108 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.161 0.839 30 H 0.249 0.751 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.377 -20.216 0.090 20.684 hybrid contribution -0.592 0.843 0.010 1.030 sum -4.969 -19.372 0.100 20.000 Atomic orbital electron populations 1.23195 0.77468 1.04532 1.01938 1.86107 1.22135 1.25760 1.87989 1.19261 0.90831 0.85728 0.97108 1.21094 1.00693 0.90996 1.08044 1.21326 0.93426 0.98144 0.94024 1.19672 0.93363 0.93304 1.07826 1.17927 0.86820 0.83652 0.77038 1.90783 1.13339 1.87479 1.50606 1.45592 1.11485 1.04726 1.73639 1.20999 0.95164 0.82179 1.03565 1.19705 0.89269 0.83973 0.85786 1.90488 1.18127 1.82392 1.57610 1.41796 1.10130 1.03874 1.62365 1.19730 0.90715 0.84715 1.48377 0.87637 1.25338 0.97043 0.98609 0.96699 1.69612 1.14639 1.20001 1.49094 0.85806 0.80118 0.79562 0.78508 1.20241 1.20770 1.19296 1.21081 1.01940 0.88762 0.95805 1.16731 0.85851 0.82928 1.10522 1.91518 1.76526 1.48365 1.94414 0.87767 0.92043 0.92047 0.83676 0.83911 0.75060 0.89525 0.89531 0.76977 0.91524 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.03 10.35 -19.01 -0.20 -3.23 16 3 C 0.12 1.25 6.70 -38.98 -0.26 0.99 16 4 C -0.19 -1.72 9.01 -39.51 -0.36 -2.08 16 5 C -0.05 -0.53 9.53 -39.21 -0.37 -0.90 16 6 C -0.14 -1.77 5.87 -104.96 -0.62 -2.38 16 7 C 0.56 8.77 7.76 -12.44 -0.10 8.67 16 8 O -0.54 -10.01 16.34 5.29 0.09 -9.93 16 9 N -0.70 -11.25 5.48 -62.51 -0.34 -11.59 16 10 C 0.11 1.93 6.15 -5.20 -0.03 1.90 16 11 C 0.43 9.47 7.85 -10.99 -0.09 9.39 16 12 O -0.60 -14.74 15.24 5.54 0.08 -14.66 16 13 N -0.55 -13.24 5.29 -10.96 -0.06 -13.29 16 14 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 16 15 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.50 13.05 55.50 0.72 -22.77 16 18 Si 0.93 20.16 29.55 -169.99 -5.02 15.13 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 C -0.06 -0.69 9.56 -39.15 -0.37 -1.07 16 23 C 0.06 0.71 7.30 -39.36 -0.29 0.43 16 24 F -0.13 -1.66 17.10 2.25 0.04 -1.62 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 27 H 0.06 0.27 7.64 -51.93 -0.40 -0.13 16 28 H 0.15 0.90 6.27 -52.49 -0.33 0.57 16 29 H 0.14 1.34 6.39 -52.49 -0.34 1.01 16 30 H 0.41 6.27 5.46 -40.82 -0.22 6.05 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.16 1.89 7.64 -52.49 -0.40 1.49 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -31.63 317.32 -4.82 -36.46 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -3.18 Total: 12.36 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.73 Total: 8.35 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.32 Total: -47.66 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.03 Total: -27.81 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.63 -4.82 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343514277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.364 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds