Wall clock time and date at job start Tue Mar 31 2020 04:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00175 * 2 1 4 4 O 1.20822 * 120.00245 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99945 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46838 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99801 * 269.99738 * 6 5 3 8 8 H 1.07995 * 119.99853 * 202.99827 * 7 6 5 9 9 C 1.38952 * 119.99787 * 22.99975 * 7 6 5 10 10 N 1.31408 * 120.00221 * 351.28504 * 9 7 6 11 11 Si 1.86799 * 119.99794 * 171.28894 * 9 7 6 12 12 H 1.48499 * 109.47031 * 89.99596 * 11 9 7 13 13 H 1.48499 * 109.47071 * 209.99880 * 11 9 7 14 14 H 1.48499 * 109.47151 * 330.00014 * 11 9 7 15 15 C 1.34775 * 120.00384 * 90.00291 * 6 5 3 16 16 O 1.21292 * 119.99393 * 355.03913 * 15 6 5 17 17 C 1.50691 * 120.00234 * 175.31241 * 15 6 5 18 18 C 1.50698 * 109.47370 * 184.65308 * 17 15 6 19 19 N 1.31869 * 119.63329 * 90.00078 * 18 17 15 20 20 C 1.31853 * 121.74883 * 180.02562 * 19 18 17 21 21 C 1.38239 * 120.82026 * 359.97438 * 20 19 18 22 22 C 1.38587 * 119.18813 * 0.02562 * 21 20 19 23 23 C 1.38421 * 119.63731 * 269.73457 * 18 17 15 24 24 F 1.35102 * 120.44439 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.46805 * 299.99641 * 1 2 3 26 26 H 1.09002 * 109.47091 * 59.99225 * 1 2 3 27 27 H 1.09000 * 109.47580 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46491 * 60.00610 * 5 3 2 29 29 H 1.08994 * 109.47119 * 300.00541 * 5 3 2 30 30 H 0.96994 * 120.00273 * 185.01018 * 10 9 7 31 31 H 1.09002 * 109.47412 * 304.65430 * 17 15 6 32 32 H 1.09003 * 109.47291 * 64.65769 * 17 15 6 33 33 H 1.08005 * 119.58815 * 179.97438 * 20 19 18 34 34 H 1.07994 * 120.40377 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.79940 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.1766 3.3372 -1.1861 8 1 4.8150 4.2075 -1.2228 9 6 3.5527 2.8839 -2.3419 10 7 2.9171 1.7338 -2.3377 11 14 3.6175 3.9095 -3.9018 12 1 4.8134 3.5285 -4.6954 13 1 2.3923 3.6666 -4.7051 14 1 3.6982 5.3487 -3.5450 15 6 4.1725 3.3256 1.1685 16 8 3.9140 2.7728 2.2167 17 6 4.7009 4.7368 1.1711 18 6 4.9296 5.1850 2.5917 19 7 6.1011 4.9773 3.1603 20 6 6.3464 5.3516 4.4005 21 6 5.3748 5.9816 5.1556 22 6 4.1301 6.2180 4.5939 23 6 3.9094 5.8150 3.2833 24 9 2.7133 6.0301 2.6931 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7807 0.8907 30 1 2.5441 1.3827 -3.1614 31 1 5.6422 4.7734 0.6226 32 1 3.9765 5.3970 0.6941 33 1 7.3186 5.1638 4.8319 34 1 5.5831 6.2857 6.1706 35 1 3.3521 6.7085 5.1600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349947307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:21 Heat of formation + Delta-G solvation = -111.331875 kcal Electronic energy + Delta-G solvation = -24282.977416 eV Core-core repulsion = 20389.818381 eV Total energy + Delta-G solvation = -3893.159035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.63446 -39.97303 -39.32588 -38.15930 -35.44187 -34.54492 -32.85485 -31.63405 -31.51157 -29.00448 -27.50294 -26.08062 -24.60462 -23.35397 -22.38404 -20.24279 -19.27341 -17.50467 -17.22497 -16.97189 -16.55449 -16.37612 -15.84813 -15.43315 -15.37842 -15.09558 -14.35531 -14.23012 -13.90513 -13.71895 -13.24400 -13.14916 -12.93408 -12.63533 -12.43644 -12.35230 -11.75989 -11.48087 -11.36696 -11.20356 -11.08018 -10.80590 -10.56976 -10.44962 -9.77700 -9.73363 -9.51445 -9.36265 -8.98573 -8.81724 -8.46087 -7.96932 -6.44894 -4.08472 1.13129 1.26972 3.08470 3.18341 3.21580 3.52123 3.73871 3.79919 4.01652 4.09787 4.25249 4.52133 4.74063 4.81336 4.94158 5.01133 5.06284 5.51783 5.73673 5.81457 5.85350 5.85891 5.99060 5.99210 6.05140 6.23885 6.27147 6.33633 6.53235 6.81390 6.91484 7.30415 7.51991 7.65244 8.08179 8.22638 8.95829 9.17764 9.32702 9.72465 10.56844 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.005612 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.091819 B = 4987.993408 C = 5917.147849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.490 3.510 4 O -0.512 6.512 5 C 0.158 3.842 6 N -0.431 5.431 7 C -0.329 4.329 8 H 0.104 0.896 9 C 0.043 3.957 10 N -0.885 5.885 11 Si 0.934 3.066 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.484 3.516 16 O -0.596 6.596 17 C -0.079 4.079 18 C 0.144 3.856 19 N -0.451 5.451 20 C 0.088 3.912 21 C -0.158 4.158 22 C -0.112 4.112 23 C 0.062 3.938 24 F -0.125 7.125 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.074 0.926 30 H 0.273 0.727 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 4.229 7.204 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.332 3.668 4 O -0.398 6.398 5 C 0.032 3.968 6 N -0.150 5.150 7 C -0.456 4.456 8 H 0.122 0.878 9 C -0.160 4.160 10 N -0.525 5.525 11 Si 0.760 3.240 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.272 3.728 16 O -0.482 6.482 17 C -0.119 4.119 18 C 0.004 3.996 19 N -0.159 5.159 20 C -0.070 4.070 21 C -0.178 4.178 22 C -0.139 4.139 23 C 0.040 3.960 24 F -0.103 7.103 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.157 0.843 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.945 3.771 7.060 8.529 hybrid contribution -1.316 0.937 -0.573 1.715 sum 1.628 4.708 6.487 8.179 Atomic orbital electron populations 1.22907 0.79016 1.01700 1.01464 1.86461 1.21400 1.35595 1.85685 1.23959 0.92342 0.80410 0.70040 1.90504 1.66662 1.36445 1.46208 1.20672 0.87042 0.85189 1.03861 1.43276 1.58050 1.08542 1.05177 1.19691 1.27908 1.12859 0.85168 0.87815 1.25283 0.94234 0.96314 1.00205 1.69599 1.36385 1.17950 1.28566 0.85814 0.77743 0.80036 0.80393 1.20252 1.20789 1.19281 1.19721 0.82265 0.87028 0.83790 1.90561 1.56986 1.68781 1.31829 1.20391 1.04174 0.96888 0.90490 1.21024 0.88287 0.93369 0.96930 1.67536 1.20638 1.15885 1.11871 1.22764 0.99587 0.94797 0.89831 1.21951 0.93311 1.01074 1.01443 1.21571 0.98762 1.00210 0.93361 1.18560 0.82713 1.01915 0.92791 1.91535 1.42533 1.92586 1.83677 0.93271 0.92820 0.89664 0.84309 0.90786 0.91546 0.87363 0.87456 0.82309 0.84240 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.40 10.56 -39.25 -0.41 -8.82 16 3 C 0.49 12.58 5.92 36.01 0.21 12.80 16 4 O -0.51 -14.63 15.94 -18.75 -0.30 -14.93 16 5 C 0.16 3.90 5.21 -5.19 -0.03 3.88 16 6 N -0.43 -11.01 2.11 -116.10 -0.25 -11.25 16 7 C -0.33 -8.21 9.14 -14.93 -0.14 -8.34 16 8 H 0.10 2.37 6.51 -52.49 -0.34 2.03 16 9 C 0.04 1.06 5.41 -17.47 -0.09 0.97 16 10 N -0.88 -22.72 8.21 55.50 0.46 -22.27 16 11 Si 0.93 19.59 29.57 -169.99 -5.03 14.56 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.48 12.05 7.61 -10.99 -0.08 11.97 16 16 O -0.60 -16.23 15.67 5.55 0.09 -16.14 16 17 C -0.08 -1.64 4.35 -29.04 -0.13 -1.77 16 18 C 0.14 2.77 5.29 -82.51 -0.44 2.33 16 19 N -0.45 -8.03 10.27 -9.42 -0.10 -8.13 16 20 C 0.09 1.19 11.18 -17.54 -0.20 1.00 16 21 C -0.16 -1.87 10.11 -39.45 -0.40 -2.27 16 22 C -0.11 -1.56 10.16 -39.21 -0.40 -1.96 16 23 C 0.06 1.11 7.27 -39.27 -0.29 0.83 16 24 F -0.12 -2.42 16.49 2.25 0.04 -2.38 16 25 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.14 3.41 6.28 -51.93 -0.33 3.09 16 29 H 0.07 1.75 7.49 -51.93 -0.39 1.36 16 30 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 31 H 0.11 2.05 7.59 -51.93 -0.39 1.66 16 32 H 0.11 2.17 7.62 -51.93 -0.40 1.78 16 33 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -33.12 314.74 -5.18 -38.30 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.52 Total: 5.03 kcal Atomic # 6 Polarization: 22.19 SS G_CDS: -0.90 Total: 21.28 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.11 Total: -41.65 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.63 Total: -39.89 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.12 -5.18 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349947307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.028 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds