Wall clock time and date at job start Tue Mar 31 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35947 * 117.00273 * 2 1 4 4 C 1.38549 * 120.02279 * 359.72679 * 3 2 1 5 5 C 1.38838 * 119.89927 * 179.81345 * 4 3 2 6 6 N 1.39808 * 120.03382 * 180.20831 * 5 4 3 7 7 C 1.34770 * 120.00098 * 213.60276 * 6 5 4 8 8 O 1.21390 * 120.00163 * 5.28103 * 7 6 5 9 9 C 1.49339 * 120.00101 * 185.27286 * 7 6 5 10 10 O 1.21366 * 119.99567 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00435 * 180.02562 * 9 7 6 12 12 C 1.46503 * 120.00061 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47015 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99886 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00132 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99997 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99922 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47247 * 89.99908 * 17 15 13 19 19 H 1.48501 * 109.47086 * 210.00147 * 17 15 13 20 20 H 1.48505 * 109.46954 * 329.99641 * 17 15 13 21 21 C 1.38948 * 119.94198 * 0.43712 * 5 4 3 22 22 C 1.38151 * 120.04682 * 359.79400 * 21 5 4 23 23 C 1.38365 * 120.10377 * 359.97438 * 22 21 5 24 24 F 1.35101 * 119.96928 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47455 * 299.99347 * 1 2 3 26 26 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47448 * 59.99620 * 1 2 3 28 28 H 1.08001 * 120.05056 * 0.02562 * 4 3 2 29 29 H 0.97002 * 119.99125 * 33.60389 * 6 5 4 30 30 H 0.97004 * 119.99725 * 359.97438 * 11 9 7 31 31 H 1.08998 * 109.46893 * 299.99465 * 12 11 9 32 32 H 1.08994 * 109.46954 * 59.99691 * 12 11 9 33 33 H 0.97004 * 119.99877 * 179.97438 * 16 15 13 34 34 H 1.07998 * 119.97790 * 179.76797 * 21 5 4 35 35 H 1.07999 * 119.94217 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2921 2.3736 -0.0057 5 6 1.9251 3.6092 -0.0018 6 7 1.1670 4.7839 -0.0031 7 6 1.6207 5.8780 -0.6460 8 8 2.6393 5.8170 -1.3034 9 6 0.8702 7.1656 -0.5497 10 8 -0.1481 7.2266 0.1079 11 7 1.3236 8.2597 -1.1930 12 6 0.5876 9.5229 -1.0980 13 6 1.2996 10.5807 -1.9011 14 1 2.2096 10.3366 -2.4292 15 6 0.7894 11.8601 -1.9619 16 7 1.4105 12.7831 -2.6633 17 14 -0.7841 12.2825 -1.0481 18 1 -0.4511 12.7471 0.3225 19 1 -1.5046 13.3590 -1.7743 20 1 -1.6477 11.0771 -0.9661 21 6 3.3130 3.6775 -0.0013 22 6 4.0626 2.5171 -0.0005 23 6 3.4337 1.2846 0.0005 24 9 4.1695 0.1515 0.0008 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 0.2135 2.3185 -0.0098 29 1 0.3144 4.8112 0.4587 30 1 2.1376 8.2110 -1.7182 31 1 -0.4205 9.3863 -1.4893 32 1 0.5334 9.8342 -0.0549 33 1 1.0513 13.6832 -2.7063 34 1 3.8060 4.6384 -0.0020 35 1 5.1412 2.5721 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427869473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:57 Heat of formation + Delta-G solvation = -117.514862 kcal Electronic energy + Delta-G solvation = -22566.339566 eV Core-core repulsion = 18672.912416 eV Total energy + Delta-G solvation = -3893.427150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.94281 -41.13001 -40.03478 -38.62265 -37.47184 -35.23809 -34.31246 -32.46651 -30.75378 -29.90880 -28.47796 -27.58171 -25.04673 -23.14056 -22.74510 -21.55039 -20.22481 -19.11203 -18.57511 -17.67643 -17.11714 -16.73527 -16.48834 -16.42065 -15.81269 -15.66023 -15.29699 -15.12739 -14.73761 -14.59156 -14.30173 -14.05675 -13.31361 -13.29952 -13.15015 -12.78507 -12.50565 -12.33477 -12.16476 -11.78952 -11.60895 -11.44939 -11.13442 -10.88522 -10.38843 -10.08506 -9.62154 -9.42256 -9.03338 -8.91788 -8.48955 -8.19507 -6.29906 -4.34309 0.63936 0.93380 1.60462 2.34770 2.77128 3.17246 3.19517 3.26704 3.31648 3.46083 3.79534 3.97643 4.23806 4.38198 4.58013 4.76319 4.76530 4.80586 4.83664 5.04190 5.08200 5.11223 5.22522 5.55791 5.83024 5.93904 6.01505 6.35182 6.51830 6.75011 6.84760 6.88186 6.92954 7.18279 7.55214 7.90322 8.27597 8.37113 8.69664 9.27115 10.81780 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034970 B = 0.002765 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.485945 B =10125.542720 C =10741.747194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.116 3.884 4 C -0.209 4.209 5 C 0.182 3.818 6 N -0.651 5.651 7 C 0.511 3.489 8 O -0.495 6.495 9 C 0.494 3.506 10 O -0.537 6.537 11 N -0.662 5.662 12 C 0.218 3.782 13 C -0.550 4.550 14 H 0.083 0.917 15 C 0.080 3.920 16 N -0.887 5.887 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.261 1.261 21 C -0.129 4.129 22 C -0.092 4.092 23 C 0.051 3.949 24 F -0.134 7.134 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.144 0.856 29 H 0.425 0.575 30 H 0.411 0.589 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.149 0.851 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -23.243 6.760 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.069 3.931 4 C -0.230 4.230 5 C 0.087 3.913 6 N -0.298 5.298 7 C 0.294 3.706 8 O -0.367 6.367 9 C 0.273 3.727 10 O -0.416 6.416 11 N -0.311 5.311 12 C 0.096 3.904 13 C -0.588 4.588 14 H 0.101 0.899 15 C -0.125 4.125 16 N -0.524 5.524 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.185 1.185 21 C -0.150 4.150 22 C -0.112 4.112 23 C 0.031 3.969 24 F -0.112 7.112 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.263 0.737 30 H 0.247 0.753 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.619 -23.134 6.663 24.083 hybrid contribution -0.984 0.313 0.347 1.089 sum -1.603 -22.821 7.010 23.927 Atomic orbital electron populations 1.23152 0.77739 1.04402 1.01761 1.86149 1.21881 1.25439 1.88622 1.18629 0.90584 0.85081 0.98835 1.20801 1.00598 0.90033 1.11548 1.17463 0.90887 0.84981 0.97951 1.43237 1.24325 1.09315 1.52938 1.20812 0.85574 0.85318 0.78937 1.90784 1.23898 1.84472 1.37536 1.19649 0.85831 0.84754 0.82514 1.90737 1.24532 1.84905 1.41442 1.46138 1.28380 1.09739 1.46857 1.19736 0.92950 0.79820 0.97853 1.21037 1.12021 0.93615 1.32100 0.89875 1.24781 0.97220 0.95778 0.94681 1.69874 1.39541 1.03293 1.39669 0.86822 0.83586 0.79031 0.80258 1.19715 1.20740 1.18506 1.21015 0.91753 0.99582 1.02602 1.20903 1.01233 0.89456 0.99575 1.16945 0.85854 0.83054 1.11081 1.91492 1.76432 1.48856 1.94460 0.92246 0.87839 0.92231 0.83876 0.73693 0.75301 0.94836 0.95274 0.92067 0.83302 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.10 10.36 -19.57 -0.20 -3.31 16 3 C 0.12 1.24 6.69 -39.20 -0.26 0.98 16 4 C -0.21 -2.01 8.95 -39.24 -0.35 -2.37 16 5 C 0.18 2.06 6.27 -83.73 -0.53 1.54 16 6 N -0.65 -7.69 5.32 -10.30 -0.05 -7.75 16 7 C 0.51 7.63 7.62 -11.64 -0.09 7.54 16 8 O -0.49 -8.08 14.16 5.46 0.08 -8.00 16 9 C 0.49 8.78 7.89 -11.64 -0.09 8.69 16 10 O -0.54 -10.42 16.48 5.48 0.09 -10.33 16 11 N -0.66 -13.02 5.54 -61.95 -0.34 -13.37 16 12 C 0.22 5.03 4.50 -5.19 -0.02 5.01 16 13 C -0.55 -14.58 9.83 -34.44 -0.34 -14.92 16 14 H 0.08 2.33 7.84 -52.48 -0.41 1.92 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 17 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 21 C -0.13 -1.49 8.65 -39.35 -0.34 -1.83 16 22 C -0.09 -0.95 10.01 -39.57 -0.40 -1.35 16 23 C 0.05 0.58 7.31 -39.27 -0.29 0.29 16 24 F -0.13 -1.63 17.11 2.25 0.04 -1.59 16 25 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 28 H 0.14 1.02 6.30 -52.49 -0.33 0.69 16 29 H 0.42 4.24 8.30 -40.82 -0.34 3.90 16 30 H 0.41 7.68 7.79 -40.82 -0.32 7.36 16 31 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 32 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.15 1.82 6.41 -52.49 -0.34 1.48 16 35 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -31.23 315.39 -4.66 -35.89 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.31 Total: 6.11 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.81 Total: 6.80 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.38 Total: -46.03 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.23 -4.66 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427869473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.626 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds