Wall clock time and date at job start Tue Mar 31 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99593 * 2 1 4 4 O 1.20824 * 120.00127 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99259 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46492 * 179.97438 * 5 3 2 7 7 C 1.36804 * 120.00136 * 264.73780 * 6 5 3 8 8 H 1.08001 * 119.99781 * 140.15268 * 7 6 5 9 9 C 1.39042 * 120.00116 * 320.16768 * 7 6 5 10 10 N 1.31378 * 120.00330 * 158.25955 * 9 7 6 11 11 Si 1.86796 * 119.99898 * 338.24914 * 9 7 6 12 12 H 1.48504 * 109.47336 * 92.64730 * 11 9 7 13 13 H 1.48500 * 109.47601 * 212.64676 * 11 9 7 14 14 H 1.48500 * 109.47264 * 332.64721 * 11 9 7 15 15 C 1.34776 * 119.99964 * 84.74607 * 6 5 3 16 16 O 1.21807 * 120.00133 * 355.04620 * 15 6 5 17 17 C 1.41532 * 120.00046 * 175.32327 * 15 6 5 18 18 C 1.35361 * 120.00211 * 184.39945 * 17 15 6 19 19 C 1.46673 * 120.00396 * 179.97438 * 18 17 15 20 20 C 1.36574 * 123.30778 * 179.73144 * 19 18 17 21 21 S 1.70937 * 108.70541 * 179.87353 * 20 19 18 22 22 C 1.70730 * 91.22296 * 0.32720 * 21 20 19 23 23 N 1.28613 * 110.81955 * 359.81003 * 22 21 20 24 24 H 1.09002 * 109.46800 * 299.99897 * 1 2 3 25 25 H 1.09000 * 109.47173 * 59.99698 * 1 2 3 26 26 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47406 * 60.00336 * 5 3 2 28 28 H 1.08998 * 109.47320 * 299.99698 * 5 3 2 29 29 H 0.96999 * 120.00490 * 179.97438 * 10 9 7 30 30 H 1.08002 * 119.99581 * 4.39928 * 17 15 6 31 31 H 1.08002 * 120.00207 * 359.97438 * 18 17 15 32 32 H 1.08004 * 125.64711 * 359.96092 * 20 19 18 33 33 H 1.07996 * 124.58902 * 179.76433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2793 3.3047 -1.1811 8 1 3.9693 4.3263 -1.3443 9 6 4.9806 2.6245 -2.1704 10 7 4.9062 3.0227 -3.4202 11 14 6.0288 1.1447 -1.7225 12 1 5.2236 -0.0946 -1.8678 13 1 7.2052 1.0794 -2.6264 14 1 6.4911 1.2726 -0.3171 15 6 4.0706 3.3566 1.1610 16 8 3.7199 2.8292 2.2014 17 6 4.5661 4.6823 1.1717 18 6 4.7393 5.3307 2.3472 19 6 5.2533 6.7044 2.3584 20 6 5.4489 7.4227 3.5034 21 16 6.0573 8.9646 3.0860 22 6 6.0088 8.5744 1.4246 23 7 5.5709 7.3781 1.2486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 5.3958 2.5484 -4.1103 30 1 4.8059 5.1766 0.2419 31 1 4.4991 4.8365 3.2770 32 1 5.2530 7.0737 4.5066 33 1 6.3051 9.2421 0.6292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491881348.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:08 Heat of formation + Delta-G solvation = -33.741804 kcal Electronic energy + Delta-G solvation = -21114.799907 eV Core-core repulsion = 17655.385512 eV Total energy + Delta-G solvation = -3459.414396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05685 -39.57035 -38.71552 -35.94176 -34.95823 -32.88669 -32.10722 -30.05341 -28.79297 -26.72132 -25.47367 -24.79105 -22.81618 -20.80763 -19.49358 -19.04626 -17.88668 -17.29431 -16.93448 -16.66967 -15.91218 -15.53724 -15.31030 -15.19889 -14.41150 -14.05275 -13.93275 -13.47296 -13.24803 -13.08478 -12.92009 -12.68033 -12.41176 -11.85115 -11.63200 -11.48039 -11.39819 -10.95278 -10.59417 -10.33151 -10.14591 -9.99093 -9.87821 -9.62220 -9.56324 -9.38054 -8.83125 -8.08984 -7.83935 -6.61628 -4.20515 0.60885 1.44726 1.73016 1.81448 2.88050 2.94187 3.05423 3.16137 3.19768 3.34355 3.98056 4.18837 4.33391 4.43097 4.87696 5.24614 5.27744 5.37445 5.39823 5.46250 5.47905 5.69403 5.80016 5.84618 5.94334 6.08474 6.49440 6.81985 6.86434 7.02274 7.16142 7.80363 7.90475 8.15052 8.40964 8.80028 9.14322 9.48454 10.47973 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.004498 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.741555 B = 6223.484738 C = 7265.868347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.451 3.549 4 O -0.488 6.488 5 C 0.106 3.894 6 N -0.434 5.434 7 C -0.341 4.341 8 H 0.111 0.889 9 C 0.068 3.932 10 N -0.843 5.843 11 Si 0.862 3.138 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.511 3.489 16 O -0.597 6.597 17 C -0.112 4.112 18 C -0.067 4.067 19 C 0.099 3.901 20 C -0.287 4.287 21 S 0.159 5.841 22 C 0.005 3.995 23 N -0.442 5.442 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.279 0.721 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.179 0.821 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 4.593 8.556 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.291 3.709 4 O -0.373 6.373 5 C -0.020 4.020 6 N -0.154 5.154 7 C -0.468 4.468 8 H 0.128 0.872 9 C -0.141 4.141 10 N -0.476 5.476 11 Si 0.687 3.313 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.178 1.178 15 C 0.305 3.695 16 O -0.484 6.484 17 C -0.134 4.134 18 C -0.090 4.090 19 C -0.032 4.032 20 C -0.427 4.427 21 S 0.413 5.587 22 C -0.295 4.295 23 N -0.155 5.155 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.196 0.804 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.315 5.311 8.782 10.347 hybrid contribution -0.068 -1.572 -0.285 1.599 sum 1.247 3.739 8.497 9.367 Atomic orbital electron populations 1.23132 0.77563 1.02799 1.02262 1.86520 1.22661 1.34501 1.84991 1.24656 0.92730 0.81208 0.72260 1.90618 1.66541 1.36273 1.43845 1.21455 0.87079 0.88389 1.05045 1.43348 1.56497 1.08479 1.07041 1.19128 1.36177 1.01040 0.90437 0.87171 1.25456 0.96015 0.98048 0.94626 1.69748 1.37665 1.40548 0.99656 0.87146 0.81296 0.82302 0.80516 1.19409 1.20446 1.17826 1.17113 0.81671 0.87811 0.82863 1.90690 1.54118 1.71398 1.32191 1.22355 0.96930 0.94418 0.99737 1.21531 0.99018 0.89215 0.99211 1.19764 1.01004 0.96422 0.86052 1.26741 1.12276 0.99398 1.04320 1.82613 1.58112 1.13535 1.04469 1.28450 1.04302 0.96861 0.99845 1.67008 1.12027 1.05724 1.30721 0.92337 0.92210 0.88735 0.87135 0.87232 0.91077 0.83604 0.84379 0.80383 0.78444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.01 10.57 -39.28 -0.41 -7.42 16 3 C 0.45 10.19 7.99 36.01 0.29 10.48 16 4 O -0.49 -12.40 16.06 -18.75 -0.30 -12.70 16 5 C 0.11 2.39 4.53 -5.19 -0.02 2.37 16 6 N -0.43 -10.85 1.67 -119.37 -0.20 -11.05 16 7 C -0.34 -9.02 8.69 -15.03 -0.13 -9.15 16 8 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 9 C 0.07 1.76 5.26 -17.45 -0.09 1.67 16 10 N -0.84 -22.83 13.95 55.50 0.77 -22.06 16 11 Si 0.86 19.20 25.23 -169.99 -4.29 14.92 16 12 H -0.27 -5.59 6.59 56.52 0.37 -5.22 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.25 -5.68 7.11 56.52 0.40 -5.28 16 15 C 0.51 12.56 7.21 -15.01 -0.11 12.45 16 16 O -0.60 -15.27 15.84 5.09 0.08 -15.19 16 17 C -0.11 -2.47 8.72 -39.35 -0.34 -2.81 16 18 C -0.07 -1.26 9.52 -37.20 -0.35 -1.62 16 19 C 0.10 1.65 6.66 -84.27 -0.56 1.09 16 20 C -0.29 -3.71 10.99 30.13 0.33 -3.38 16 21 S 0.16 1.60 22.96 -107.50 -2.47 -0.87 16 22 C 0.01 0.06 12.15 51.41 0.62 0.69 16 23 N -0.44 -7.46 9.96 -12.22 -0.12 -7.59 16 24 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 2.44 3.74 -51.93 -0.19 2.24 16 28 H 0.11 2.27 7.66 -51.93 -0.40 1.88 16 29 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.15 3.36 6.04 -52.49 -0.32 3.04 16 31 H 0.14 2.49 7.46 -52.49 -0.39 2.10 16 32 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -32.72 310.19 -4.52 -37.24 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.95 Total: 6.67 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 0.70 Total: 13.38 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.45 Total: -40.69 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.64 Total: -35.32 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.29 Total: 14.92 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.72 -4.52 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491881348.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.499 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds