Wall clock time and date at job start Tue Mar 31 2020 03:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99593 * 2 1 4 4 O 1.20824 * 120.00127 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99259 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46492 * 179.97438 * 5 3 2 7 7 C 1.36804 * 120.00136 * 264.73780 * 6 5 3 8 8 H 1.08001 * 119.99781 * 140.15268 * 7 6 5 9 9 C 1.39042 * 120.00116 * 320.16768 * 7 6 5 10 10 N 1.31378 * 120.00330 * 158.25955 * 9 7 6 11 11 Si 1.86796 * 119.99898 * 338.24914 * 9 7 6 12 12 H 1.48504 * 109.47336 * 92.64730 * 11 9 7 13 13 H 1.48500 * 109.47601 * 212.64676 * 11 9 7 14 14 H 1.48500 * 109.47264 * 332.64721 * 11 9 7 15 15 C 1.34776 * 119.99964 * 84.74607 * 6 5 3 16 16 O 1.21807 * 120.00133 * 355.04620 * 15 6 5 17 17 C 1.41532 * 120.00046 * 175.32327 * 15 6 5 18 18 C 1.35361 * 120.00211 * 184.39945 * 17 15 6 19 19 C 1.46673 * 120.00396 * 179.97438 * 18 17 15 20 20 C 1.36574 * 123.30778 * 179.73144 * 19 18 17 21 21 S 1.70937 * 108.70541 * 179.87353 * 20 19 18 22 22 C 1.70730 * 91.22296 * 0.32720 * 21 20 19 23 23 N 1.28613 * 110.81955 * 359.81003 * 22 21 20 24 24 H 1.09002 * 109.46800 * 299.99897 * 1 2 3 25 25 H 1.09000 * 109.47173 * 59.99698 * 1 2 3 26 26 H 1.08994 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47406 * 60.00336 * 5 3 2 28 28 H 1.08998 * 109.47320 * 299.99698 * 5 3 2 29 29 H 0.96999 * 120.00490 * 179.97438 * 10 9 7 30 30 H 1.08002 * 119.99581 * 4.39928 * 17 15 6 31 31 H 1.08002 * 120.00207 * 359.97438 * 18 17 15 32 32 H 1.08004 * 125.64711 * 359.96092 * 20 19 18 33 33 H 1.07996 * 124.58902 * 179.76433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2793 3.3047 -1.1811 8 1 3.9693 4.3263 -1.3443 9 6 4.9806 2.6245 -2.1704 10 7 4.9062 3.0227 -3.4202 11 14 6.0288 1.1447 -1.7225 12 1 5.2236 -0.0946 -1.8678 13 1 7.2052 1.0794 -2.6264 14 1 6.4911 1.2726 -0.3171 15 6 4.0706 3.3566 1.1610 16 8 3.7199 2.8292 2.2014 17 6 4.5661 4.6823 1.1717 18 6 4.7393 5.3307 2.3472 19 6 5.2533 6.7044 2.3584 20 6 5.4489 7.4227 3.5034 21 16 6.0573 8.9646 3.0860 22 6 6.0088 8.5744 1.4246 23 7 5.5709 7.3781 1.2486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 5.3958 2.5484 -4.1103 30 1 4.8059 5.1766 0.2419 31 1 4.4991 4.8365 3.2770 32 1 5.2530 7.0737 4.5066 33 1 6.3051 9.2421 0.6292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491881348.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:07 Heat of formation + Delta-G solvation = -56.552251 kcal Electronic energy + Delta-G solvation = -21115.789042 eV Core-core repulsion = 17655.385512 eV Total energy + Delta-G solvation = -3460.403531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.79546 -40.84119 -40.35693 -37.63713 -36.83415 -34.41084 -34.06483 -31.41850 -30.30247 -28.08988 -27.21354 -26.14280 -24.29547 -22.43738 -21.04751 -20.48765 -19.41590 -18.99277 -18.59277 -18.19772 -17.50620 -17.17465 -16.94250 -16.66156 -15.80152 -15.76609 -15.45659 -14.89794 -14.68487 -14.52841 -14.38064 -14.22489 -14.15338 -13.51899 -13.17914 -13.00743 -12.72798 -12.55230 -12.36546 -11.97880 -11.83727 -11.74934 -11.29854 -11.23670 -10.74209 -10.63095 -10.55932 -9.96560 -9.16332 -8.58888 -6.24316 -0.56439 0.36354 0.51672 0.79544 1.12109 1.18415 1.33613 1.43628 1.56099 1.96203 2.13017 2.44279 2.64742 2.98473 3.30615 3.85638 3.93043 4.02682 4.14524 4.19946 4.28580 4.29970 4.38680 4.42423 4.61235 4.62964 5.09525 5.15383 5.26796 5.31409 5.49998 5.96218 6.09123 6.70283 6.76935 6.83452 7.19739 7.57583 8.55302 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.004498 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.741555 B = 6223.484738 C = 7265.868347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.453 3.547 4 O -0.527 6.527 5 C 0.098 3.902 6 N -0.448 5.448 7 C -0.347 4.347 8 H 0.070 0.930 9 C 0.029 3.971 10 N -0.886 5.886 11 Si 0.919 3.081 12 H -0.239 1.239 13 H -0.271 1.271 14 H -0.256 1.256 15 C 0.513 3.487 16 O -0.615 6.615 17 C -0.171 4.171 18 C -0.015 4.015 19 C 0.043 3.957 20 C -0.271 4.271 21 S 0.275 5.725 22 C -0.015 4.015 23 N -0.495 5.495 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.143 0.857 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.285 0.715 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.206 0.794 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 4.806 10.872 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.415 6.415 5 C -0.027 4.027 6 N -0.167 5.167 7 C -0.475 4.475 8 H 0.087 0.913 9 C -0.177 4.177 10 N -0.521 5.521 11 Si 0.740 3.260 12 H -0.164 1.164 13 H -0.197 1.197 14 H -0.180 1.180 15 C 0.309 3.691 16 O -0.504 6.504 17 C -0.194 4.194 18 C -0.038 4.038 19 C -0.089 4.089 20 C -0.412 4.412 21 S 0.531 5.469 22 C -0.313 4.313 23 N -0.209 5.209 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.161 0.839 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.223 0.777 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.203 5.520 11.091 12.583 hybrid contribution -0.367 -1.319 -0.744 1.558 sum 1.837 4.201 10.347 11.318 Atomic orbital electron populations 1.23565 0.74886 1.05938 1.02140 1.86489 1.25144 1.32182 1.84102 1.24613 0.92848 0.81632 0.71391 1.90600 1.67316 1.37736 1.45844 1.21595 0.87593 0.87300 1.06163 1.43313 1.57551 1.09394 1.06461 1.18766 1.37249 1.00029 0.91423 0.91268 1.26078 0.96446 1.01108 0.94055 1.69822 1.38955 1.42649 1.00677 0.86246 0.79873 0.79794 0.80042 1.16380 1.19680 1.17960 1.17466 0.80663 0.88403 0.82569 1.90637 1.55190 1.72049 1.32500 1.22008 1.02754 0.94410 1.00248 1.21835 0.93683 0.90099 0.98142 1.19627 1.05278 0.96239 0.87710 1.27300 1.08617 1.00820 1.04504 1.82281 1.54300 1.09524 1.00833 1.28972 1.03380 0.96059 1.02885 1.66968 1.13965 1.07837 1.32096 0.92388 0.92545 0.83901 0.86505 0.85334 0.90467 0.85760 0.83437 0.77708 0.75810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.36 -13.37 10.57 -51.49 -0.54 -13.91 16 3 C 0.45 20.69 7.99 71.24 0.57 21.26 16 4 O -0.53 -27.69 16.06 21.97 0.35 -27.33 16 5 C 0.10 4.48 4.53 85.63 0.39 4.87 16 6 N -0.45 -23.34 1.67 -649.74 -1.08 -24.42 16 7 C -0.35 -19.60 8.69 84.11 0.73 -18.87 16 8 H 0.07 4.35 7.15 -2.91 -0.02 4.33 16 9 C 0.03 1.56 5.26 84.95 0.45 2.01 16 10 N -0.89 -50.01 13.95 21.68 0.30 -49.71 16 11 Si 0.92 39.78 25.23 68.60 1.73 41.51 16 12 H -0.24 -9.21 6.59 99.48 0.66 -8.56 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 15 C 0.51 26.42 7.21 85.05 0.61 27.03 16 16 O -0.61 -32.20 15.84 -4.69 -0.07 -32.27 16 17 C -0.17 -8.09 8.72 22.42 0.20 -7.89 16 18 C -0.01 -0.57 9.52 23.81 0.23 -0.34 16 19 C 0.04 1.41 6.66 40.68 0.27 1.68 16 20 C -0.27 -6.14 10.99 67.43 0.74 -5.40 16 21 S 0.28 4.39 22.96 -56.49 -1.30 3.10 16 22 C -0.01 -0.34 12.15 130.71 1.59 1.25 16 23 N -0.49 -16.84 9.96 -192.58 -1.92 -18.76 16 24 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 25 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 26 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.12 5.10 3.74 -2.39 -0.01 5.09 16 28 H 0.13 5.28 7.66 -2.39 -0.02 5.26 16 29 H 0.29 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.12 6.34 6.04 -2.91 -0.02 6.33 16 31 H 0.15 5.30 7.46 -2.91 -0.02 5.28 16 32 H 0.21 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.23 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -76.55 310.19 5.54 -71.01 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.11 Total: 23.24 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 6.97 Total: 27.56 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -2.70 Total: -92.89 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -0.27 Total: -73.52 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.73 Total: 41.51 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.30 Total: 3.10 kcal Total: -76.55 5.54 -71.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491881348.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds