Wall clock time and date at job start Tue Mar 31 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31322 * 1 3 3 Si 1.86803 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47239 * 239.99994 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99714 * 3 2 1 7 7 C 1.39125 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00096 * 180.02562 * 7 2 1 9 9 N 1.36709 * 119.99906 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00372 * 180.02562 * 9 7 2 11 11 O 1.21762 * 119.99715 * 359.97438 * 10 9 7 12 12 C 1.46221 * 120.00493 * 180.02562 * 10 9 7 13 13 C 1.34984 * 120.00190 * 180.02562 * 12 10 9 14 14 C 1.47149 * 119.99969 * 179.97438 * 13 12 10 15 15 C 1.39871 * 120.17147 * 359.71909 * 14 13 12 16 16 C 1.37879 * 119.82267 * 179.74729 * 15 14 13 17 17 C 1.38421 * 120.17172 * 0.55554 * 16 15 14 18 18 S 1.76198 * 119.82242 * 179.72104 * 17 16 15 19 19 N 1.65608 * 107.21774 * 269.97510 * 18 17 16 20 20 O 1.42095 * 106.40678 * 23.51685 * 18 17 16 21 21 O 1.42101 * 106.40031 * 156.43828 * 18 17 16 22 22 C 1.38407 * 120.34858 * 359.70034 * 17 16 15 23 23 C 1.37883 * 120.17868 * 0.02562 * 22 17 16 24 24 H 0.96990 * 119.99908 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00003 * 0.02562 * 9 7 2 26 26 H 1.08004 * 120.00109 * 0.26747 * 12 10 9 27 27 H 1.07999 * 119.99934 * 359.97438 * 13 12 10 28 28 H 1.08003 * 120.09430 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.91903 * 180.25443 * 16 15 14 30 30 H 0.96998 * 119.99571 * 0.02562 * 19 18 17 31 31 H 0.96991 * 119.99689 * 180.02562 * 19 18 17 32 32 H 1.08006 * 119.91110 * 180.02562 * 22 17 16 33 33 H 1.07993 * 120.08895 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1010 1.6965 -1.2125 5 1 1.2822 2.7465 -0.0006 6 1 3.1009 1.6965 1.2125 7 6 2.0089 -1.2048 -0.0005 8 1 3.0889 -1.2048 -0.0001 9 7 1.3254 -2.3888 -0.0005 10 6 1.9993 -3.5560 -0.0005 11 8 3.2169 -3.5559 -0.0010 12 6 1.2683 -4.8223 -0.0011 13 6 1.9432 -5.9913 -0.0006 14 6 1.2075 -7.2657 -0.0006 15 6 -0.1912 -7.2699 0.0048 16 6 -0.8733 -8.4681 -0.0005 17 6 -0.1775 -9.6648 0.0005 18 16 -1.0585 -11.1907 0.0011 19 7 -1.3035 -11.6146 1.5831 20 8 -2.3414 -10.9136 -0.5434 21 8 -0.1768 -12.1632 -0.5429 22 6 1.2066 -9.6689 0.0005 23 6 1.9033 -8.4790 0.0001 24 1 -0.4849 0.8400 -0.0004 25 1 0.3554 -2.3888 -0.0005 26 1 0.1882 -4.8224 -0.0059 27 1 3.0232 -5.9913 -0.0002 28 1 -0.7355 -6.3371 0.0086 29 1 -1.9532 -8.4732 -0.0005 30 1 -0.9744 -11.0435 2.2947 31 1 -1.7761 -12.4339 1.7980 32 1 1.7424 -10.6067 0.0008 33 1 2.9832 -8.4840 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492342747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:10 Heat of formation + Delta-G solvation = -74.891747 kcal Electronic energy + Delta-G solvation = -19931.801097 eV Core-core repulsion = 16470.602306 eV Total energy + Delta-G solvation = -3461.198791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.43916 -38.24720 -37.31711 -36.00817 -34.50692 -33.68449 -33.44034 -31.53958 -31.27584 -29.72488 -25.79658 -23.98892 -22.94993 -21.08118 -19.77559 -18.83722 -18.63908 -17.99499 -17.60731 -16.93740 -16.24761 -15.89199 -15.23856 -15.06133 -14.77492 -14.35285 -14.04335 -13.64954 -13.61560 -13.22184 -12.96517 -12.57983 -12.36189 -12.27472 -12.15500 -11.82794 -11.69758 -11.27609 -11.04716 -10.94193 -10.77532 -10.63263 -10.48529 -10.46520 -9.75272 -9.22967 -8.61289 -8.37129 -8.22942 -6.75532 -4.01630 0.09391 0.35696 1.19147 1.99280 2.93201 3.08515 3.11129 3.15108 3.34129 3.64034 3.95035 4.21821 4.30330 4.55366 4.68983 4.71369 5.12486 5.12579 5.14882 5.30710 5.37465 5.58683 5.68651 5.77372 5.93168 6.00231 6.07802 6.19832 6.67510 6.70871 6.75897 6.80443 7.24279 7.79400 8.33574 8.88971 9.24461 9.84595 10.40092 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.042397 B = 0.002484 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.264209 B =11268.788636 C =11745.644757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.289 4.289 8 H 0.110 0.890 9 N -0.532 5.532 10 C 0.439 3.561 11 O -0.605 6.605 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.028 3.972 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.694 4.694 18 S 2.704 3.296 19 N -1.252 6.252 20 O -0.968 6.968 21 O -0.969 6.969 22 C -0.016 4.016 23 C -0.139 4.139 24 H 0.280 0.720 25 H 0.395 0.605 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.417 0.583 31 H 0.418 0.582 32 H 0.141 0.859 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -18.413 3.899 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.419 4.419 8 H 0.128 0.872 9 N -0.164 5.164 10 C 0.229 3.771 11 O -0.493 6.493 12 C -0.143 4.143 13 C -0.142 4.142 14 C 0.027 3.973 15 C -0.165 4.165 16 C -0.033 4.033 17 C -0.783 4.783 18 S 2.794 3.206 19 N -0.926 5.926 20 O -0.957 6.957 21 O -0.958 6.958 22 C -0.036 4.036 23 C -0.158 4.158 24 H 0.090 0.910 25 H 0.229 0.771 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.244 0.756 31 H 0.248 0.752 32 H 0.158 0.842 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.215 -18.593 2.945 19.291 hybrid contribution -0.008 1.426 0.697 1.587 sum -4.223 -17.167 3.642 18.050 Atomic orbital electron populations 1.69559 1.06305 1.29344 1.46544 1.25493 0.95732 1.00448 0.96443 0.85784 0.78871 0.79433 0.79513 1.19437 1.20597 1.19444 1.19890 0.93977 0.82233 1.45837 0.87193 1.41972 1.09578 1.05115 1.59743 1.17720 0.87911 0.83762 0.87659 1.90660 1.13250 1.87146 1.58274 1.23376 0.99644 0.93932 0.97354 1.22056 1.00323 0.89502 1.02353 1.19545 0.93173 0.93694 0.90852 1.21585 0.93774 0.98626 1.02506 1.20838 1.00093 0.90945 0.91406 1.30325 1.06091 1.18687 1.23207 1.01355 0.73700 0.73326 0.72197 1.53093 1.75906 1.36801 1.26805 1.93595 1.40531 1.85040 1.76535 1.93591 1.66772 1.58863 1.76573 1.20826 0.91791 0.99221 0.91718 1.21463 1.00558 0.91324 1.02423 0.91014 0.77097 0.86502 0.84550 0.84421 0.84110 0.75604 0.75206 0.84172 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.34 13.05 55.50 0.72 -21.62 16 2 C 0.02 0.60 5.50 -17.44 -0.10 0.50 16 3 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.29 -7.67 9.68 -15.05 -0.15 -7.82 16 8 H 0.11 3.05 7.15 -52.49 -0.38 2.67 16 9 N -0.53 -13.01 5.27 -12.31 -0.06 -13.07 16 10 C 0.44 10.26 7.69 -13.06 -0.10 10.16 16 11 O -0.60 -16.32 15.80 5.13 0.08 -16.24 16 12 C -0.12 -2.15 9.41 -37.53 -0.35 -2.51 16 13 C -0.12 -1.93 9.46 -37.12 -0.35 -2.28 16 14 C 0.03 0.37 5.87 -105.06 -0.62 -0.24 16 15 C -0.15 -1.77 9.41 -39.10 -0.37 -2.14 16 16 C -0.01 -0.15 9.50 -39.65 -0.38 -0.52 16 17 C -0.69 -7.21 5.95 -39.45 -0.23 -7.44 16 18 S 2.70 25.52 6.28 -107.50 -0.67 24.84 16 19 N -1.25 -6.74 9.55 60.35 0.58 -6.17 16 20 O -0.97 -12.18 17.27 -57.17 -0.99 -13.17 16 21 O -0.97 -12.00 17.27 -57.17 -0.99 -12.98 16 22 C -0.02 -0.17 9.50 -39.65 -0.38 -0.55 16 23 C -0.14 -1.61 9.80 -39.10 -0.38 -1.99 16 24 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 25 H 0.40 9.06 7.87 -40.82 -0.32 8.74 16 26 H 0.12 1.71 6.08 -52.48 -0.32 1.40 16 27 H 0.14 2.30 7.52 -52.49 -0.39 1.91 16 28 H 0.14 1.50 6.17 -52.48 -0.32 1.18 16 29 H 0.14 1.29 7.60 -52.49 -0.40 0.89 16 30 H 0.42 1.43 8.92 -34.47 -0.31 1.12 16 31 H 0.42 1.53 8.96 -34.47 -0.31 1.22 16 32 H 0.14 1.20 7.60 -52.48 -0.40 0.80 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -34.71 311.34 -7.77 -42.48 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.71 Total: 11.42 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.40 Total: -14.82 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 1.24 Total: -40.85 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.89 Total: -42.39 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 25.52 SS G_CDS: -0.67 Total: 24.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.71 -7.77 -42.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492342747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.412 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds