Wall clock time and date at job start Tue Mar 31 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34236 * 116.99822 * 2 1 4 4 O 1.20826 * 119.99906 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99657 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46703 * 180.02562 * 5 3 2 7 7 C 1.36776 * 120.00038 * 89.99989 * 6 5 3 8 8 H 1.07997 * 119.99804 * 161.00826 * 7 6 5 9 9 C 1.39058 * 119.99629 * 341.01363 * 7 6 5 10 10 N 1.31368 * 120.00277 * 8.85763 * 9 7 6 11 11 Si 1.86803 * 119.99683 * 188.85020 * 9 7 6 12 12 H 1.48506 * 109.46745 * 90.00237 * 11 9 7 13 13 H 1.48502 * 109.47395 * 209.99956 * 11 9 7 14 14 H 1.48498 * 109.47240 * 330.00502 * 11 9 7 15 15 C 1.34775 * 120.00103 * 269.72802 * 6 5 3 16 16 O 1.21832 * 120.00125 * 5.17057 * 15 6 5 17 17 C 1.41346 * 119.99875 * 185.17764 * 15 6 5 18 18 C 1.35722 * 119.99790 * 185.51623 * 17 15 6 19 19 C 1.41644 * 119.99895 * 12.27807 * 18 17 15 20 20 C 1.37148 * 126.19345 * 223.22386 * 19 18 17 21 21 N 1.30949 * 113.83411 * 179.78109 * 20 19 18 22 22 C 1.29359 * 117.49772 * 0.52692 * 21 20 19 23 23 S 1.70916 * 110.66191 * 359.69893 * 22 21 20 24 24 H 1.08996 * 109.46941 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.46800 * 60.00064 * 1 2 3 26 26 H 1.08997 * 109.46614 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47217 * 60.00248 * 5 3 2 28 28 H 1.08992 * 109.47299 * 299.99738 * 5 3 2 29 29 H 0.96997 * 119.99530 * 174.97592 * 10 9 7 30 30 H 1.08002 * 120.00112 * 5.52478 * 17 15 6 31 31 H 1.08002 * 119.99938 * 192.26317 * 18 17 15 32 32 H 1.08005 * 123.07862 * 359.95623 * 20 19 18 33 33 H 1.08001 * 124.66865 * 179.72738 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1751 3.3354 1.1858 8 1 4.7606 4.2425 1.2117 9 6 3.6179 2.8338 2.3570 10 7 3.0559 1.6463 2.3610 11 14 3.6686 3.8484 3.9246 12 1 2.4531 4.6978 4.0040 13 1 3.7165 2.9418 5.0998 14 1 4.8765 4.7122 3.9163 15 6 4.1785 3.3248 -1.1658 16 8 3.9208 2.7700 -2.2195 17 6 4.6839 4.6448 -1.1673 18 6 4.7768 5.3346 -2.3324 19 6 4.1365 4.8461 -3.4976 20 6 4.6697 4.8117 -4.7607 21 7 3.8653 4.3044 -5.6610 22 6 2.6955 3.9177 -5.2667 23 16 2.5079 4.1794 -3.5882 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9564 0.7806 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 2.7325 1.2657 3.1925 30 1 4.9962 5.1045 -0.2412 31 1 5.3388 6.2560 -2.3711 32 1 5.6630 5.1676 -4.9912 33 1 1.9415 3.4882 -5.9096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493333336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:53 Heat of formation + Delta-G solvation = -18.414539 kcal Electronic energy + Delta-G solvation = -22053.898413 eV Core-core repulsion = 18595.148658 eV Total energy + Delta-G solvation = -3458.749756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.68752 -38.93384 -38.40308 -35.76109 -34.81377 -33.33550 -31.77523 -29.36130 -28.13052 -26.43947 -25.38476 -24.50936 -22.07744 -20.12105 -19.69499 -19.31099 -17.69037 -16.87070 -16.58148 -16.21638 -15.53814 -15.42196 -15.03534 -14.52022 -14.19451 -13.86234 -13.59395 -13.28952 -12.91104 -12.71598 -12.54882 -12.39533 -12.05833 -11.63883 -11.43009 -11.29558 -10.95176 -10.88412 -10.66889 -10.53580 -9.92048 -9.79479 -9.62047 -9.15208 -8.99270 -8.71292 -8.38086 -7.77479 -7.40556 -6.61562 -4.16671 0.78710 2.07986 2.39638 2.61997 3.00861 3.07875 3.09429 3.46589 3.57843 3.66080 3.91771 4.29984 4.68666 4.94811 4.96426 5.61661 5.64453 5.71571 5.74588 5.79362 5.88200 5.99259 6.13528 6.23805 6.40678 6.70231 6.78994 6.82208 7.03608 7.14653 7.35065 7.48384 8.06380 8.36448 8.77031 9.01620 9.18096 9.62141 10.33181 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.006475 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.532151 B = 4323.382613 C = 5542.727611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.372 6.372 3 C 0.490 3.510 4 O -0.513 6.513 5 C 0.142 3.858 6 N -0.406 5.406 7 C -0.317 4.317 8 H 0.110 0.890 9 C 0.039 3.961 10 N -0.876 5.876 11 Si 0.937 3.063 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.267 1.267 15 C 0.465 3.535 16 O -0.593 6.593 17 C -0.148 4.148 18 C -0.057 4.057 19 C -0.182 4.182 20 C 0.025 3.975 21 N -0.483 5.483 22 C -0.058 4.058 23 S 0.266 5.734 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.277 0.723 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.165 0.835 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 1.776 -2.856 3.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.289 6.289 3 C 0.332 3.668 4 O -0.399 6.399 5 C 0.017 3.983 6 N -0.120 5.120 7 C -0.445 4.445 8 H 0.127 0.873 9 C -0.165 4.165 10 N -0.515 5.515 11 Si 0.763 3.237 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.259 3.741 16 O -0.483 6.483 17 C -0.173 4.173 18 C -0.081 4.081 19 C -0.305 4.305 20 C -0.132 4.132 21 N -0.198 5.198 22 C -0.350 4.350 23 S 0.525 5.475 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.037 1.361 -3.096 3.948 hybrid contribution 0.618 0.613 0.942 1.283 sum -1.418 1.974 -2.154 3.247 Atomic orbital electron populations 1.22941 0.78796 1.01903 1.01529 1.86476 1.21539 1.35366 1.85499 1.23952 0.92266 0.80466 0.70088 1.90519 1.66719 1.36422 1.46209 1.20966 0.87235 0.85292 1.04815 1.43557 1.54083 1.08675 1.05722 1.19891 1.30697 1.09469 0.84424 0.87252 1.25389 0.94376 0.96295 1.00424 1.69676 1.38078 1.15108 1.28648 0.85755 0.79059 0.79310 0.79560 1.19987 1.20564 1.19173 1.16945 0.85378 0.87981 0.83792 1.90792 1.58035 1.69292 1.30212 1.22404 1.01249 0.95400 0.98237 1.20274 0.98282 0.99337 0.90221 1.23718 0.99390 1.09099 0.98272 1.22160 1.00440 1.03549 0.87050 1.65867 1.03317 1.13342 1.37297 1.28239 0.99244 1.08352 0.99125 1.83958 1.09914 1.50505 1.03173 0.92793 0.93105 0.89522 0.90377 0.83194 0.91183 0.84899 0.84998 0.81785 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.37 -7.85 10.57 -39.27 -0.41 -8.27 16 3 C 0.49 11.75 6.11 36.00 0.22 11.97 16 4 O -0.51 -13.59 16.15 -18.75 -0.30 -13.89 16 5 C 0.14 3.32 5.21 -5.19 -0.03 3.29 16 6 N -0.41 -9.73 2.10 -119.43 -0.25 -9.98 16 7 C -0.32 -7.47 9.20 -15.04 -0.14 -7.61 16 8 H 0.11 2.36 5.78 -52.49 -0.30 2.06 16 9 C 0.04 0.92 5.42 -17.45 -0.09 0.82 16 10 N -0.88 -21.13 8.35 55.50 0.46 -20.67 16 11 Si 0.94 18.51 29.57 -169.99 -5.03 13.48 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 15 C 0.47 10.77 6.95 -15.08 -0.10 10.66 16 16 O -0.59 -14.48 11.29 5.07 0.06 -14.42 16 17 C -0.15 -2.90 9.17 -39.30 -0.36 -3.26 16 18 C -0.06 -0.99 9.92 -39.18 -0.39 -1.38 16 19 C -0.18 -3.41 4.66 -38.68 -0.18 -3.59 16 20 C 0.03 0.45 11.38 -18.32 -0.21 0.25 16 21 N -0.48 -9.06 10.50 -15.04 -0.16 -9.22 16 22 C -0.06 -1.01 12.20 51.72 0.63 -0.38 16 23 S 0.27 5.08 19.58 -107.50 -2.11 2.98 16 24 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 25 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.75 7.49 -51.93 -0.39 1.37 16 28 H 0.15 3.53 5.93 -51.93 -0.31 3.22 16 29 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.13 2.36 6.00 -52.49 -0.32 2.04 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -30.22 302.30 -5.75 -35.98 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.99 Total: 6.89 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 0.41 Total: 12.57 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.05 Total: -39.86 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.66 Total: -36.59 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -2.11 Total: 2.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.22 -5.75 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493333336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.562 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds