Wall clock time and date at job start Tue Mar 31 2020 05:05:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.29861 * 125.54783 * 2 1
4 4 N 1.26261 * 117.78883 * 180.02562 * 3 2 1
5 5 C 1.30761 * 116.24653 * 359.97438 * 4 3 2
6 6 C 1.47315 * 126.18583 * 180.02562 * 5 4 3
7 7 O 1.21608 * 119.99991 * 180.02562 * 6 5 4
8 8 N 1.34778 * 119.99660 * 0.02562 * 6 5 4
9 9 C 1.46505 * 119.99485 * 179.97438 * 8 6 5
10 10 C 1.53076 * 109.45150 * 84.78885 * 9 8 6
11 11 C 1.53183 * 109.29478 * 181.24130 * 10 9 8
12 12 N 1.46930 * 108.89468 * 305.57480 * 11 10 9
13 13 C 1.36937 * 120.63259 * 233.51494 * 12 11 10
14 14 H 1.08000 * 119.99761 * 151.83401 * 13 12 11
15 15 C 1.38806 * 120.00219 * 331.83653 * 13 12 11
16 16 N 1.31624 * 120.00191 * 343.07619 * 15 13 12
17 17 Si 1.86800 * 120.00146 * 163.07294 * 15 13 12
18 18 H 1.48506 * 109.46812 * 0.02562 * 17 15 13
19 19 H 1.48499 * 109.47258 * 119.99807 * 17 15 13
20 20 H 1.48499 * 109.47344 * 240.00342 * 17 15 13
21 21 C 1.46925 * 118.73328 * 53.53726 * 12 11 10
22 22 C 1.53033 * 109.45770 * 204.99541 * 9 8 6
23 23 S 1.71282 * 125.54389 * 180.31453 * 2 1 3
24 24 H 1.08997 * 109.47554 * 90.02434 * 1 2 3
25 25 H 1.08998 * 109.47046 * 210.02767 * 1 2 3
26 26 H 1.09001 * 109.47081 * 330.02540 * 1 2 3
27 27 H 0.96997 * 120.00409 * 359.97438 * 8 6 5
28 28 H 1.08990 * 109.46254 * 324.97445 * 9 8 6
29 29 H 1.09005 * 109.39190 * 61.36037 * 10 9 8
30 30 H 1.09004 * 109.62337 * 301.25830 * 10 9 8
31 31 H 1.09005 * 109.58619 * 185.72200 * 11 10 9
32 32 H 1.08998 * 109.58733 * 65.43770 * 11 10 9
33 33 H 0.96995 * 120.00379 * 180.02562 * 16 15 13
34 34 H 1.09001 * 109.58688 * 66.18006 * 21 12 11
35 35 H 1.08996 * 109.58570 * 186.45714 * 21 12 11
36 36 H 1.09003 * 109.49897 * 58.66679 * 22 9 8
37 37 H 1.09004 * 109.50093 * 298.57148 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2620 1.0566 0.0000
4 7 3.5130 0.8861 -0.0005
5 6 3.9276 -0.3540 -0.0004
6 6 5.3311 -0.8018 -0.0004
7 8 5.5902 -1.9900 -0.0009
8 7 6.3278 0.1053 0.0001
9 6 7.7236 -0.3401 0.0006
10 6 8.1699 -0.6199 -1.4366
11 6 9.6196 -1.1149 -1.4291
12 7 10.4524 -0.1374 -0.7152
13 6 11.5733 0.3856 -1.3029
14 1 11.9171 1.3718 -1.0278
15 6 12.2675 -0.3517 -2.2522
16 7 12.0684 -1.6489 -2.3527
17 14 13.4845 0.4971 -3.3871
18 1 13.5254 1.9479 -3.0729
19 1 14.8348 -0.0893 -3.1925
20 1 13.0610 0.3074 -4.7978
21 6 10.0600 0.2679 0.6414
22 6 8.6065 0.7507 0.6108
23 16 2.5027 -1.3936 -0.0077
24 1 -0.3634 -0.0004 -1.0276
25 1 -0.3633 -0.8897 0.5143
26 1 -0.3633 0.8902 0.5134
27 1 6.1212 1.0530 0.0000
28 1 7.8134 -1.2522 0.5904
29 1 8.1016 0.2972 -2.0218
30 1 7.5275 -1.3821 -1.8776
31 1 9.9756 -1.2187 -2.4541
32 1 9.6738 -2.0793 -0.9240
33 1 12.5537 -2.1641 -3.0158
34 1 10.1481 -0.5831 1.3169
35 1 10.7082 1.0745 0.9837
36 1 8.2724 0.9636 1.6263
37 1 8.5364 1.6556 0.0071
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000612611622.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:05:10
Heat of formation + Delta-G solvation = 47.042767 kcal
Electronic energy + Delta-G solvation = -21184.383055 eV
Core-core repulsion = 17896.597587 eV
Total energy + Delta-G solvation = -3287.785468 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.49263 -39.72437 -37.39877 -34.58480 -33.59758 -32.18358 -30.37847 -29.86570
-29.02294 -26.14882 -24.99940 -22.98470 -22.27779 -21.56362 -20.06350 -19.44863
-19.25643 -17.55244 -16.70890 -16.33769 -15.94292 -14.96962 -14.75102 -14.68947
-14.12837 -13.80631 -13.66612 -13.54149 -13.46873 -13.10133 -12.99781 -12.65011
-12.45001 -11.53675 -11.24078 -11.10265 -10.96346 -10.75106 -10.73300 -10.44494
-10.24797 -10.20088 -10.11070 -10.07969 -10.07694 -9.79615 -9.59424 -8.85382
-8.45479 -6.70123 -5.79649 -3.22799 -0.31101 0.38614 0.93055 1.86916
2.93101 3.00902 3.37376 3.45295 3.47337 3.67080 4.13647 4.45441
4.48959 4.86146 4.90092 5.04687 5.24652 5.35211 5.38359 5.42353
5.56901 5.77201 6.02684 6.17293 6.23115 6.37863 6.53588 6.62777
6.72835 6.78356 6.90716 7.33460 7.43196 7.66143 7.79482 7.99426
8.11135 8.44005 9.19842 9.82930 10.39348 11.29044
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.037479 B = 0.002983 C = 0.002957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.908108 B = 9384.107607 C = 9465.993010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.011 4.011
3 N -0.269 5.269
4 N -0.213 5.213
5 C -0.047 4.047
6 C 0.595 3.405
7 O -0.521 6.521
8 N -0.692 5.692
9 C 0.149 3.851
10 C -0.148 4.148
11 C 0.174 3.826
12 N -0.593 5.593
13 C -0.254 4.254
14 H 0.067 0.933
15 C 0.002 3.998
16 N -0.901 5.901
17 Si 0.902 3.098
18 H -0.277 1.277
19 H -0.290 1.290
20 H -0.289 1.289
21 C 0.149 3.851
22 C -0.140 4.140
23 S 0.225 5.775
24 H 0.095 0.905
25 H 0.088 0.912
26 H 0.097 0.903
27 H 0.407 0.593
28 H 0.087 0.913
29 H 0.057 0.943
30 H 0.055 0.945
31 H 0.091 0.909
32 H 0.022 0.978
33 H 0.254 0.746
34 H 0.021 0.979
35 H 0.060 0.940
36 H 0.058 0.942
37 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.581 1.913 5.525 23.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.288 4.288
3 N -0.111 5.111
4 N -0.057 5.057
5 C -0.327 4.327
6 C 0.375 3.625
7 O -0.396 6.396
8 N -0.342 5.342
9 C 0.047 3.953
10 C -0.188 4.188
11 C 0.048 3.952
12 N -0.315 5.315
13 C -0.383 4.383
14 H 0.085 0.915
15 C -0.196 4.196
16 N -0.545 5.545
17 Si 0.732 3.268
18 H -0.202 1.202
19 H -0.217 1.217
20 H -0.216 1.216
21 C 0.022 3.978
22 C -0.180 4.180
23 S 0.468 5.532
24 H 0.114 0.886
25 H 0.107 0.893
26 H 0.116 0.884
27 H 0.242 0.758
28 H 0.105 0.895
29 H 0.076 0.924
30 H 0.073 0.927
31 H 0.109 0.891
32 H 0.040 0.960
33 H 0.064 0.936
34 H 0.039 0.961
35 H 0.079 0.921
36 H 0.077 0.923
37 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -22.223 1.228 5.410 22.905
hybrid contribution 0.454 0.920 -0.675 1.228
sum -21.769 2.149 4.735 22.381
Atomic orbital electron populations
1.20459 0.83408 1.05065 1.04728 1.29557 1.04621 0.92581 1.02009
1.71323 0.96986 1.27004 1.15749 1.72019 1.05842 1.16722 1.11075
1.29911 1.01380 0.92653 1.08742 1.16518 0.81579 0.86258 0.78181
1.90894 1.83038 1.15429 1.50206 1.46184 1.06463 1.09813 1.71757
1.21259 0.76708 0.98570 0.98788 1.22611 1.00769 1.01115 0.94339
1.20757 0.84638 0.90269 0.99585 1.44115 1.26627 1.50007 1.10775
1.19215 1.02324 0.97500 1.19296 0.91545 1.25070 0.98053 0.94888
1.01625 1.70039 1.44109 1.04538 1.35860 0.86229 0.80695 0.79037
0.80835 1.20237 1.21712 1.21560 1.20841 0.91140 0.97517 0.88335
1.22361 0.98165 0.97973 0.99451 1.84911 0.96042 1.09147 1.63076
0.88639 0.89339 0.88449 0.75807 0.89488 0.92374 0.92678 0.89131
0.95992 0.93610 0.96084 0.92130 0.92341 0.91524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.34 10.48 36.00 0.38 0.04 16
2 C -0.01 -0.10 7.53 -13.11 -0.10 -0.20 16
3 N -0.27 -3.34 11.59 32.66 0.38 -2.96 16
4 N -0.21 -2.92 11.37 32.94 0.37 -2.54 16
5 C -0.05 -0.64 7.58 -14.32 -0.11 -0.74 16
6 C 0.60 9.29 7.77 -12.57 -0.10 9.19 16
7 O -0.52 -9.53 16.64 5.27 0.09 -9.44 16
8 N -0.69 -10.38 5.07 -54.86 -0.28 -10.66 16
9 C 0.15 2.59 2.41 -67.87 -0.16 2.42 16
10 C -0.15 -2.93 5.66 -26.60 -0.15 -3.08 16
11 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16
12 N -0.59 -14.66 3.00 -172.33 -0.52 -15.17 16
13 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16
14 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16
15 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16
16 N -0.90 -26.19 11.20 55.49 0.62 -25.57 16
17 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16
18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
21 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16
22 C -0.14 -2.31 5.55 -26.62 -0.15 -2.46 16
23 S 0.22 2.21 23.13 -107.50 -2.49 -0.27 16
24 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16
25 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16
26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.41 5.40 8.30 -40.82 -0.34 5.06 16
28 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16
29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
31 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16
32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16
36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 325.55 15.07 4.91 4.91
Total: -1.00 -32.09 325.55 -7.42 -39.51
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: -4.81 Total: 0.32 kcal
Atomic # 6 Polarization: 5.94 SS G_CDS: -0.66 Total: 5.28 kcal
Atomic # 7 Polarization: -57.48 SS G_CDS: 0.58 Total: -56.90 kcal
Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal
Atomic # 16 Polarization: 2.21 SS G_CDS: -2.49 Total: -0.27 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -32.09 -7.42 -39.51 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000612611622.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.554 kcal
(2) G-P(sol) polarization free energy of solvation -32.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.043 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds