Wall clock time and date at job start Tue Mar 31 2020 05:05:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.29861 * 125.54783 * 2 1
4 4 N 1.26261 * 117.78883 * 180.02562 * 3 2 1
5 5 C 1.30761 * 116.24653 * 359.97438 * 4 3 2
6 6 C 1.47315 * 126.18583 * 180.02562 * 5 4 3
7 7 O 1.21608 * 119.99991 * 180.02562 * 6 5 4
8 8 N 1.34778 * 119.99660 * 0.02562 * 6 5 4
9 9 C 1.46505 * 119.99485 * 179.97438 * 8 6 5
10 10 C 1.53076 * 109.45150 * 84.78885 * 9 8 6
11 11 C 1.53183 * 109.29478 * 181.24130 * 10 9 8
12 12 N 1.46930 * 108.89468 * 305.57480 * 11 10 9
13 13 C 1.36937 * 120.63259 * 233.51494 * 12 11 10
14 14 H 1.08000 * 119.99761 * 151.83401 * 13 12 11
15 15 C 1.38806 * 120.00219 * 331.83653 * 13 12 11
16 16 N 1.31624 * 120.00191 * 343.07619 * 15 13 12
17 17 Si 1.86800 * 120.00146 * 163.07294 * 15 13 12
18 18 H 1.48506 * 109.46812 * 0.02562 * 17 15 13
19 19 H 1.48499 * 109.47258 * 119.99807 * 17 15 13
20 20 H 1.48499 * 109.47344 * 240.00342 * 17 15 13
21 21 C 1.46925 * 118.73328 * 53.53726 * 12 11 10
22 22 C 1.53033 * 109.45770 * 204.99541 * 9 8 6
23 23 S 1.71282 * 125.54389 * 180.31453 * 2 1 3
24 24 H 1.08997 * 109.47554 * 90.02434 * 1 2 3
25 25 H 1.08998 * 109.47046 * 210.02767 * 1 2 3
26 26 H 1.09001 * 109.47081 * 330.02540 * 1 2 3
27 27 H 0.96997 * 120.00409 * 359.97438 * 8 6 5
28 28 H 1.08990 * 109.46254 * 324.97445 * 9 8 6
29 29 H 1.09005 * 109.39190 * 61.36037 * 10 9 8
30 30 H 1.09004 * 109.62337 * 301.25830 * 10 9 8
31 31 H 1.09005 * 109.58619 * 185.72200 * 11 10 9
32 32 H 1.08998 * 109.58733 * 65.43770 * 11 10 9
33 33 H 0.96995 * 120.00379 * 180.02562 * 16 15 13
34 34 H 1.09001 * 109.58688 * 66.18006 * 21 12 11
35 35 H 1.08996 * 109.58570 * 186.45714 * 21 12 11
36 36 H 1.09003 * 109.49897 * 58.66679 * 22 9 8
37 37 H 1.09004 * 109.50093 * 298.57148 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2620 1.0566 0.0000
4 7 3.5130 0.8861 -0.0005
5 6 3.9276 -0.3540 -0.0004
6 6 5.3311 -0.8018 -0.0004
7 8 5.5902 -1.9900 -0.0009
8 7 6.3278 0.1053 0.0001
9 6 7.7236 -0.3401 0.0006
10 6 8.1699 -0.6199 -1.4366
11 6 9.6196 -1.1149 -1.4291
12 7 10.4524 -0.1374 -0.7152
13 6 11.5733 0.3856 -1.3029
14 1 11.9171 1.3718 -1.0278
15 6 12.2675 -0.3517 -2.2522
16 7 12.0684 -1.6489 -2.3527
17 14 13.4845 0.4971 -3.3871
18 1 13.5254 1.9479 -3.0729
19 1 14.8348 -0.0893 -3.1925
20 1 13.0610 0.3074 -4.7978
21 6 10.0600 0.2679 0.6414
22 6 8.6065 0.7507 0.6108
23 16 2.5027 -1.3936 -0.0077
24 1 -0.3634 -0.0004 -1.0276
25 1 -0.3633 -0.8897 0.5143
26 1 -0.3633 0.8902 0.5134
27 1 6.1212 1.0530 0.0000
28 1 7.8134 -1.2522 0.5904
29 1 8.1016 0.2972 -2.0218
30 1 7.5275 -1.3821 -1.8776
31 1 9.9756 -1.2187 -2.4541
32 1 9.6738 -2.0793 -0.9240
33 1 12.5537 -2.1641 -3.0158
34 1 10.1481 -0.5831 1.3169
35 1 10.7082 1.0745 0.9837
36 1 8.2724 0.9636 1.6263
37 1 8.5364 1.6556 0.0071
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000612611622.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:05:09
Heat of formation + Delta-G solvation = 23.996984 kcal
Electronic energy + Delta-G solvation = -21185.382395 eV
Core-core repulsion = 17896.597587 eV
Total energy + Delta-G solvation = -3288.784808 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-42.39655 -41.01161 -39.01064 -36.16210 -34.48394 -33.81193 -31.91352 -31.44328
-30.17910 -27.22424 -26.56058 -24.33377 -23.93931 -22.96257 -21.37541 -20.71006
-20.31121 -18.95010 -18.31030 -17.36203 -17.21764 -16.78097 -15.97332 -15.91601
-15.43628 -15.36680 -15.05676 -14.75581 -14.45508 -14.39003 -14.10863 -13.88311
-13.50046 -13.22485 -13.05525 -12.71591 -12.60825 -12.20202 -12.08160 -12.02298
-11.85610 -11.68726 -11.59358 -11.37270 -11.19043 -10.99590 -10.84050 -10.60274
-10.18822 -8.71853 -7.88066 -5.34074 -1.17750 -0.44121 0.11626 0.93322
1.46766 1.48845 1.59331 1.80170 1.86724 2.51341 2.78897 3.28040
3.32468 3.64197 3.71172 3.82487 4.00454 4.07093 4.27618 4.44361
4.61407 4.63726 4.67288 4.71795 4.80721 4.98288 5.02797 5.06917
5.10517 5.29281 5.33661 5.44763 5.64168 5.69287 6.21114 6.38651
6.83089 7.13305 7.21335 7.83826 8.36149 9.19238
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.037479 B = 0.002983 C = 0.002957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.908108 B = 9384.107607 C = 9465.993010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.009 3.991
3 N -0.301 5.301
4 N -0.221 5.221
5 C -0.085 4.085
6 C 0.599 3.401
7 O -0.554 6.554
8 N -0.684 5.684
9 C 0.161 3.839
10 C -0.133 4.133
11 C 0.183 3.817
12 N -0.610 5.610
13 C -0.260 4.260
14 H 0.073 0.927
15 C -0.053 4.053
16 N -0.937 5.937
17 Si 0.968 3.032
18 H -0.264 1.264
19 H -0.293 1.293
20 H -0.292 1.292
21 C 0.143 3.857
22 C -0.124 4.124
23 S 0.266 5.734
24 H 0.116 0.884
25 H 0.115 0.885
26 H 0.107 0.893
27 H 0.418 0.582
28 H 0.072 0.928
29 H 0.060 0.940
30 H 0.051 0.949
31 H 0.056 0.944
32 H -0.005 1.005
33 H 0.249 0.751
34 H 0.017 0.983
35 H 0.069 0.931
36 H 0.092 0.908
37 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.047 3.336 6.135 26.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.266 4.266
3 N -0.143 5.143
4 N -0.065 5.065
5 C -0.363 4.363
6 C 0.380 3.620
7 O -0.432 6.432
8 N -0.334 5.334
9 C 0.057 3.943
10 C -0.173 4.173
11 C 0.057 3.943
12 N -0.334 5.334
13 C -0.390 4.390
14 H 0.090 0.910
15 C -0.249 4.249
16 N -0.583 5.583
17 Si 0.796 3.204
18 H -0.188 1.188
19 H -0.220 1.220
20 H -0.219 1.219
21 C 0.017 3.983
22 C -0.163 4.163
23 S 0.509 5.491
24 H 0.134 0.866
25 H 0.134 0.866
26 H 0.125 0.875
27 H 0.255 0.745
28 H 0.090 0.910
29 H 0.079 0.921
30 H 0.070 0.930
31 H 0.075 0.925
32 H 0.013 0.987
33 H 0.059 0.941
34 H 0.035 0.965
35 H 0.087 0.913
36 H 0.111 0.889
37 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -24.721 2.693 6.049 25.593
hybrid contribution 1.048 0.441 -0.812 1.397
sum -23.673 3.133 5.237 24.447
Atomic orbital electron populations
1.20823 0.79923 1.06857 1.06476 1.30355 1.06368 0.91546 0.98349
1.71326 0.96751 1.28256 1.18001 1.71989 1.06869 1.17100 1.10573
1.29454 1.01194 0.93861 1.11834 1.16718 0.82563 0.85693 0.77009
1.90872 1.83835 1.16758 1.51711 1.45910 1.05406 1.10405 1.71724
1.20910 0.78302 0.98536 0.96587 1.22354 0.97739 1.00769 0.96447
1.20464 0.87092 0.89560 0.97215 1.44362 1.26392 1.49930 1.12677
1.19582 1.02583 0.97689 1.19169 0.90965 1.25850 1.00275 0.95414
1.03322 1.70198 1.45543 1.05971 1.36614 0.85204 0.78146 0.78616
0.78458 1.18770 1.21999 1.21912 1.21029 0.93699 0.97598 0.85972
1.22171 0.95195 0.97389 1.01581 1.84776 0.93990 1.08299 1.62002
0.86586 0.86632 0.87488 0.74505 0.90981 0.92141 0.93011 0.92540
0.98666 0.94139 0.96499 0.91297 0.88909 0.90781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.40 10.48 71.24 0.75 0.35 16
2 C 0.01 0.14 7.53 88.40 0.67 0.80 16
3 N -0.30 -6.90 11.59 -50.60 -0.59 -7.49 16
4 N -0.22 -5.76 11.37 -49.69 -0.57 -6.32 16
5 C -0.08 -2.18 7.58 87.24 0.66 -1.52 16
6 C 0.60 18.43 7.77 86.63 0.67 19.11 16
7 O -0.55 -20.40 16.64 -4.06 -0.07 -20.47 16
8 N -0.68 -19.88 5.07 -445.74 -2.26 -22.15 16
9 C 0.16 5.48 2.41 45.03 0.11 5.59 16
10 C -0.13 -5.33 5.66 30.68 0.17 -5.16 16
11 C 0.18 9.16 5.30 86.36 0.46 9.62 16
12 N -0.61 -30.59 3.00 -699.11 -2.09 -32.69 16
13 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16
14 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16
15 C -0.05 -3.00 4.92 84.86 0.42 -2.59 16
16 N -0.94 -56.36 11.20 21.65 0.24 -56.12 16
17 Si 0.97 45.08 29.59 68.60 2.03 47.11 16
18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16
19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16
20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
21 C 0.14 5.71 6.52 86.36 0.56 6.27 16
22 C -0.12 -3.88 5.55 30.67 0.17 -3.71 16
23 S 0.27 4.69 23.13 -56.49 -1.31 3.39 16
24 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16
25 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16
26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16
27 H 0.42 10.44 8.30 -92.71 -0.77 9.68 16
28 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16
29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16
30 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16
31 H 0.06 3.19 6.06 -2.38 -0.01 3.18 16
32 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16
33 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16
34 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16
35 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16
36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16
37 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16
Total: -1.00 -71.63 325.55 1.16 -70.46
By element:
Atomic # 1 Polarization: 8.59 SS G_CDS: 0.33 Total: 8.93 kcal
Atomic # 6 Polarization: 9.91 SS G_CDS: 5.44 Total: 15.35 kcal
Atomic # 7 Polarization: -119.50 SS G_CDS: -5.27 Total: -124.77 kcal
Atomic # 8 Polarization: -20.40 SS G_CDS: -0.07 Total: -20.47 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal
Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.39 kcal
Total: -71.63 1.16 -70.46 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000612611622.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.458 kcal
(2) G-P(sol) polarization free energy of solvation -71.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds