Wall clock time and date at job start Tue Mar 31 2020 04:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47111 * 270.00144 * 3 2 1 5 5 H 1.48502 * 109.46858 * 29.99867 * 3 2 1 6 6 H 1.48497 * 109.47055 * 150.00016 * 3 2 1 7 7 C 1.37882 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99547 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00098 * 170.00106 * 10 9 7 12 12 C 1.53233 * 109.34118 * 187.25452 * 11 10 9 13 13 N 1.47089 * 108.52010 * 306.16646 * 12 11 10 14 14 C 1.34767 * 120.88104 * 230.91293 * 13 12 11 15 15 O 1.21752 * 119.99947 * 173.53223 * 14 13 12 16 16 C 1.46224 * 120.00555 * 353.52965 * 14 13 12 17 17 C 1.36709 * 126.11631 * 153.95412 * 16 14 13 18 18 N 1.30874 * 114.03054 * 180.02562 * 17 16 14 19 19 C 1.30230 * 117.26429 * 359.97438 * 18 17 16 20 20 N 1.37845 * 124.74673 * 180.02562 * 19 18 17 21 21 S 1.70916 * 110.50635 * 359.72867 * 19 18 17 22 22 C 1.47078 * 118.23532 * 51.18714 * 13 12 11 23 23 C 1.46898 * 110.99990 * 294.30231 * 10 9 7 24 24 H 0.96994 * 119.99939 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47115 * 60.00262 * 9 7 2 26 26 H 1.09005 * 109.47204 * 300.00075 * 9 7 2 27 27 H 1.08998 * 109.49217 * 67.29216 * 11 10 9 28 28 H 1.08999 * 109.51456 * 307.22328 * 11 10 9 29 29 H 1.09002 * 109.63167 * 186.46352 * 12 11 10 30 30 H 1.08998 * 109.63517 * 65.87531 * 12 11 10 31 31 H 1.08006 * 122.98075 * 359.97438 * 17 16 14 32 32 H 0.97001 * 119.99875 * 359.97438 * 20 19 18 33 33 H 0.96991 * 120.00315 * 179.97438 * 20 19 18 34 34 H 1.09005 * 109.63044 * 68.52186 * 22 13 12 35 35 H 1.08991 * 109.62948 * 189.10673 * 22 13 12 36 36 H 1.09001 * 109.49385 * 292.71149 * 23 10 9 37 37 H 1.09007 * 109.49182 * 52.78224 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4104 13 7 3.4618 -5.9861 -0.7546 14 6 3.7164 -7.1133 -1.4481 15 8 4.3657 -7.0615 -2.4767 16 6 3.2129 -8.3984 -0.9653 17 6 2.9413 -9.4970 -1.7322 18 7 2.4987 -10.5247 -1.0534 19 6 2.3747 -10.3801 0.2349 20 7 1.9251 -11.3584 1.0956 21 16 2.8553 -8.8102 0.7101 22 6 4.0791 -4.7077 -1.1387 23 6 2.9768 -3.6490 -1.2504 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 0.8798 -5.1263 -0.6123 28 1 0.9159 -4.8194 1.1409 29 1 2.0634 -6.9694 0.4728 30 1 3.1396 -5.8265 1.3189 31 1 3.0789 -9.5149 -2.8034 32 1 1.6738 -12.2295 0.7508 33 1 1.8599 -11.1757 2.0459 34 1 4.8004 -4.4064 -0.3790 35 1 4.5802 -4.8174 -2.1004 36 1 2.3150 -3.8991 -2.0796 37 1 3.4272 -2.6720 -1.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720299095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:20 Heat of formation + Delta-G solvation = 31.711219 kcal Electronic energy + Delta-G solvation = -21429.574240 eV Core-core repulsion = 18141.123946 eV Total energy + Delta-G solvation = -3288.450294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22827 -39.43391 -37.42906 -35.07798 -34.43520 -32.42564 -31.14929 -29.60839 -28.10252 -25.73914 -25.01561 -23.50646 -22.38011 -21.61108 -20.24707 -19.45942 -18.61029 -17.27288 -16.72984 -16.29414 -15.94554 -15.52162 -15.34480 -14.77252 -14.60626 -14.52902 -14.39486 -13.77624 -13.61781 -13.39061 -12.85921 -12.37697 -12.07554 -11.71919 -11.32030 -11.30471 -11.15621 -10.85673 -10.76359 -10.67233 -10.53787 -10.11774 -9.90932 -9.73902 -9.37743 -9.19318 -8.55485 -8.46705 -8.11904 -7.35439 -6.07080 -4.08939 0.37988 0.78349 1.39728 2.49259 2.98247 3.08795 3.28616 3.30006 3.36482 3.40397 4.38484 4.51943 4.66064 4.77362 5.16871 5.22593 5.27817 5.35473 5.46701 5.63613 5.77199 5.83871 5.95153 5.98192 6.17052 6.37346 6.41795 6.52569 6.70821 6.76866 7.19696 7.26481 7.47454 7.65214 7.73216 7.98872 8.09992 8.21574 8.45808 8.98298 9.55734 11.03757 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032440 B = 0.003383 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.921826 B = 8273.791025 C = 8789.899201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.044 3.956 12 C 0.104 3.896 13 N -0.605 5.605 14 C 0.601 3.399 15 O -0.540 6.540 16 C -0.336 4.336 17 C 0.170 3.830 18 N -0.558 5.558 19 C 0.304 3.696 20 N -0.809 5.809 21 S 0.165 5.835 22 C 0.118 3.882 23 C 0.050 3.950 24 H 0.262 0.738 25 H -0.008 1.008 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.186 0.814 32 H 0.412 0.588 33 H 0.417 0.583 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -20.808 4.096 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.085 4.085 12 C -0.021 4.021 13 N -0.337 5.337 14 C 0.388 3.612 15 O -0.419 6.419 16 C -0.463 4.463 17 C 0.012 3.988 18 N -0.283 5.283 19 C -0.066 4.066 20 N -0.360 5.360 21 S 0.414 5.586 22 C -0.004 4.004 23 C -0.079 4.079 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.203 0.797 32 H 0.244 0.756 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.142 -20.601 4.721 21.537 hybrid contribution -0.425 0.446 -1.201 1.349 sum 3.717 -20.155 3.520 20.795 Atomic orbital electron populations 1.69952 1.06101 1.26874 1.50816 1.24991 0.94861 0.99367 0.95330 0.86494 0.79810 0.83020 0.78086 1.20705 1.21272 1.19710 1.21138 0.93514 0.89831 1.50337 0.91745 1.19730 0.89987 0.87149 0.96236 1.62096 1.27935 1.02441 1.33570 1.22335 0.94551 0.90541 1.01107 1.22236 0.92342 0.99046 0.88499 1.48038 1.46692 1.08476 1.30536 1.16628 0.79470 0.81827 0.83236 1.90815 1.41178 1.86234 1.23721 1.25280 1.24125 1.01858 0.95011 1.22002 0.91335 0.84493 1.00968 1.66246 1.26369 1.32041 1.03660 1.24242 0.95940 0.94742 0.91678 1.41490 1.72082 1.14043 1.08339 1.84253 1.63265 1.02932 1.08143 1.21901 0.95866 0.81094 1.01562 1.22353 0.95184 0.99183 0.91139 0.92869 0.99037 0.95009 0.95324 0.89849 0.89996 0.90232 0.79736 0.75608 0.75224 0.90718 0.89100 0.95556 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.85 8.41 -34.44 -0.29 -14.14 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.87 4.72 -4.97 -0.02 4.85 16 10 N -0.54 -11.00 4.62 -235.77 -1.09 -12.09 16 11 C 0.04 0.75 5.62 -3.71 -0.02 0.73 16 12 C 0.10 1.45 5.61 -3.60 -0.02 1.43 16 13 N -0.60 -9.49 3.01 -174.17 -0.52 -10.01 16 14 C 0.60 9.66 7.61 -13.06 -0.10 9.56 16 15 O -0.54 -10.15 16.43 5.14 0.08 -10.06 16 16 C -0.34 -4.48 5.87 -36.93 -0.22 -4.70 16 17 C 0.17 2.16 11.24 -18.51 -0.21 1.95 16 18 N -0.56 -6.66 10.55 -14.77 -0.16 -6.82 16 19 C 0.30 2.89 8.53 -87.98 -0.75 2.14 16 20 N -0.81 -4.36 9.04 29.69 0.27 -4.09 16 21 S 0.16 1.60 19.28 -107.50 -2.07 -0.47 16 22 C 0.12 1.93 6.61 -3.60 -0.02 1.91 16 23 C 0.05 0.97 5.46 -3.70 -0.02 0.94 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 26 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 29 H 0.08 0.99 4.01 -25.38 -0.10 0.89 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 32 H 0.41 1.74 8.95 -40.82 -0.37 1.37 16 33 H 0.42 1.10 8.95 -40.82 -0.37 0.74 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.48 7.04 -51.93 -0.37 1.12 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -33.16 317.96 -9.17 -42.33 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.42 Total: -0.45 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.77 Total: 6.13 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.76 Total: -58.46 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.07 Total: -0.47 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.16 -9.17 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720299095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.041 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds