Wall clock time and date at job start Tue Mar 31 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47111 * 270.00144 * 3 2 1 5 5 H 1.48502 * 109.46858 * 29.99867 * 3 2 1 6 6 H 1.48497 * 109.47055 * 150.00016 * 3 2 1 7 7 C 1.37882 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99547 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00098 * 170.00106 * 10 9 7 12 12 C 1.53233 * 109.34118 * 187.25452 * 11 10 9 13 13 N 1.47089 * 108.52010 * 306.16646 * 12 11 10 14 14 C 1.34767 * 120.88104 * 230.91293 * 13 12 11 15 15 O 1.21752 * 119.99947 * 173.53223 * 14 13 12 16 16 C 1.46224 * 120.00555 * 353.52965 * 14 13 12 17 17 C 1.36709 * 126.11631 * 153.95412 * 16 14 13 18 18 N 1.30874 * 114.03054 * 180.02562 * 17 16 14 19 19 C 1.30230 * 117.26429 * 359.97438 * 18 17 16 20 20 N 1.37845 * 124.74673 * 180.02562 * 19 18 17 21 21 S 1.70916 * 110.50635 * 359.72867 * 19 18 17 22 22 C 1.47078 * 118.23532 * 51.18714 * 13 12 11 23 23 C 1.46898 * 110.99990 * 294.30231 * 10 9 7 24 24 H 0.96994 * 119.99939 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47115 * 60.00262 * 9 7 2 26 26 H 1.09005 * 109.47204 * 300.00075 * 9 7 2 27 27 H 1.08998 * 109.49217 * 67.29216 * 11 10 9 28 28 H 1.08999 * 109.51456 * 307.22328 * 11 10 9 29 29 H 1.09002 * 109.63167 * 186.46352 * 12 11 10 30 30 H 1.08998 * 109.63517 * 65.87531 * 12 11 10 31 31 H 1.08006 * 122.98075 * 359.97438 * 17 16 14 32 32 H 0.97001 * 119.99875 * 359.97438 * 20 19 18 33 33 H 0.96991 * 120.00315 * 179.97438 * 20 19 18 34 34 H 1.09005 * 109.63044 * 68.52186 * 22 13 12 35 35 H 1.08991 * 109.62948 * 189.10673 * 22 13 12 36 36 H 1.09001 * 109.49385 * 292.71149 * 23 10 9 37 37 H 1.09007 * 109.49182 * 52.78224 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4104 13 7 3.4618 -5.9861 -0.7546 14 6 3.7164 -7.1133 -1.4481 15 8 4.3657 -7.0615 -2.4767 16 6 3.2129 -8.3984 -0.9653 17 6 2.9413 -9.4970 -1.7322 18 7 2.4987 -10.5247 -1.0534 19 6 2.3747 -10.3801 0.2349 20 7 1.9251 -11.3584 1.0956 21 16 2.8553 -8.8102 0.7101 22 6 4.0791 -4.7077 -1.1387 23 6 2.9768 -3.6490 -1.2504 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 0.8798 -5.1263 -0.6123 28 1 0.9159 -4.8194 1.1409 29 1 2.0634 -6.9694 0.4728 30 1 3.1396 -5.8265 1.3189 31 1 3.0789 -9.5149 -2.8034 32 1 1.6738 -12.2295 0.7508 33 1 1.8599 -11.1757 2.0459 34 1 4.8004 -4.4064 -0.3790 35 1 4.5802 -4.8174 -2.1004 36 1 2.3150 -3.8991 -2.0796 37 1 3.4272 -2.6720 -1.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720299095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:19 Heat of formation + Delta-G solvation = 6.093751 kcal Electronic energy + Delta-G solvation = -21430.685097 eV Core-core repulsion = 18141.123946 eV Total energy + Delta-G solvation = -3289.561151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36446 -40.45523 -38.87707 -36.03410 -35.75601 -34.39551 -32.47061 -30.79840 -29.67054 -27.34772 -26.04325 -24.81357 -24.00299 -22.96968 -21.51422 -20.35869 -19.70712 -18.51016 -18.27618 -17.64634 -16.88315 -16.70645 -16.48612 -16.37343 -16.00801 -15.61646 -15.53789 -15.33973 -15.22432 -14.56719 -14.30742 -14.01578 -13.66124 -13.12176 -12.77972 -12.62981 -12.59232 -12.46955 -12.34306 -12.16754 -11.97246 -11.75980 -11.38189 -11.17380 -10.69794 -10.61113 -10.15698 -9.85628 -9.09605 -8.89140 -8.19591 -6.29245 -0.50648 -0.01996 0.51948 1.44089 1.44388 1.51662 1.56176 1.85099 2.16787 2.41042 2.42290 3.12652 3.21527 3.51878 3.78780 3.90744 4.02883 4.18432 4.22082 4.32248 4.38121 4.58352 4.66575 4.80100 4.92038 4.96600 4.98214 5.17024 5.22620 5.41375 5.65158 5.86160 6.03285 6.15525 6.22467 6.34242 6.56486 6.86202 6.92394 6.99613 7.40526 8.91594 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032440 B = 0.003383 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.921826 B = 8273.791025 C = 8789.899201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.113 3.887 13 N -0.610 5.610 14 C 0.601 3.399 15 O -0.577 6.577 16 C -0.377 4.377 17 C 0.178 3.822 18 N -0.582 5.582 19 C 0.310 3.690 20 N -0.783 5.783 21 S 0.209 5.791 22 C 0.128 3.872 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.042 1.042 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.422 0.578 33 H 0.433 0.567 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.009 0.991 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -22.254 5.812 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.011 4.011 13 N -0.342 5.342 14 C 0.391 3.609 15 O -0.459 6.459 16 C -0.504 4.504 17 C 0.018 3.982 18 N -0.308 5.308 19 C -0.061 4.061 20 N -0.335 5.335 21 S 0.459 5.541 22 C 0.006 3.994 23 C -0.073 4.073 24 H 0.073 0.927 25 H -0.024 1.024 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.202 0.798 32 H 0.255 0.745 33 H 0.267 0.733 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.027 0.973 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.857 -22.104 6.505 23.548 hybrid contribution -0.734 0.704 -1.678 1.962 sum 4.123 -21.400 4.827 22.322 Atomic orbital electron populations 1.70078 1.07741 1.27887 1.51814 1.25889 0.95692 1.03145 0.94833 0.85401 0.78709 0.78360 0.78272 1.20164 1.20900 1.18613 1.21468 0.93790 0.90874 1.49961 0.91486 1.19389 0.90015 0.88694 0.93688 1.62025 1.27037 1.02911 1.34088 1.22469 0.95493 0.89687 1.01149 1.22278 0.91531 0.98888 0.88427 1.48096 1.46916 1.08136 1.31022 1.16944 0.78766 0.82632 0.82555 1.90781 1.42879 1.86928 1.25314 1.25027 1.26830 1.00856 0.97648 1.22097 0.90278 0.84516 1.01286 1.66306 1.27885 1.31949 1.04676 1.24469 0.94586 0.95483 0.91524 1.41611 1.69523 1.13523 1.08804 1.83889 1.62868 1.02509 1.04862 1.21709 0.94785 0.80763 1.02154 1.22286 0.95443 0.99612 0.90002 0.92724 1.02405 0.96863 0.96465 0.88644 0.87723 0.88481 0.79820 0.74458 0.73292 0.89389 0.89158 0.97268 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.52 -28.83 8.41 25.60 0.22 -28.61 16 8 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 9 C 0.21 10.81 4.72 85.56 0.40 11.21 16 10 N -0.54 -22.26 4.62 -899.84 -4.16 -26.42 16 11 C 0.04 1.38 5.62 86.38 0.49 1.86 16 12 C 0.11 2.95 5.61 86.35 0.48 3.44 16 13 N -0.61 -18.66 3.01 -823.14 -2.48 -21.14 16 14 C 0.60 19.11 7.61 86.32 0.66 19.77 16 15 O -0.58 -21.97 16.43 -4.51 -0.07 -22.04 16 16 C -0.38 -9.60 5.87 23.99 0.14 -9.46 16 17 C 0.18 4.35 11.24 84.48 0.95 5.30 16 18 N -0.58 -12.76 10.55 -200.63 -2.12 -14.88 16 19 C 0.31 4.99 8.53 179.42 1.53 6.52 16 20 N -0.78 -5.54 9.04 -59.97 -0.54 -6.08 16 21 S 0.21 3.49 19.28 -56.49 -1.09 2.40 16 22 C 0.13 4.18 6.61 86.35 0.57 4.75 16 23 C 0.06 2.18 5.46 86.38 0.47 2.65 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 25 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 26 H 0.01 0.73 7.97 -2.38 -0.02 0.71 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 2.95 7.99 -2.39 -0.02 2.93 16 29 H 0.11 2.28 4.01 -19.26 -0.08 2.21 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.18 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.42 2.01 8.95 -92.71 -0.83 1.18 16 33 H 0.43 0.47 8.95 -92.72 -0.83 -0.36 16 34 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.09 2.98 7.04 -2.39 -0.02 2.96 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 3.51 6.67 -2.38 -0.02 3.50 16 Total: -1.00 -72.82 317.96 -2.37 -75.19 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -0.60 Total: 4.56 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.37 Total: 18.03 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -9.01 Total: -123.74 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.04 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.09 Total: 2.40 kcal Total: -72.82 -2.37 -75.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720299095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.286 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds