Wall clock time and date at job start Tue Mar 31 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 119.95121 * 2 1 4 4 C 1.38763 * 120.41299 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.84708 * 179.97438 * 4 3 2 6 6 C 1.37952 * 120.30774 * 0.02562 * 4 3 2 7 7 C 1.39790 * 119.89167 * 0.02562 * 6 4 3 8 8 C 1.47294 * 120.19832 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00092 * 185.89304 * 8 7 6 10 10 O 1.34765 * 120.00308 * 5.89406 * 8 7 6 11 11 C 1.45195 * 117.00482 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47503 * 180.02562 * 11 10 8 13 13 O 1.21287 * 119.99875 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.37094 * 119.99467 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00755 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99648 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00126 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00285 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47070 * 59.99242 * 19 17 15 21 21 H 1.48493 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46935 * 299.99811 * 19 17 15 23 23 C 1.38894 * 119.94811 * 180.02562 * 2 1 3 24 24 N 1.38954 * 120.15559 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47401 * 89.99952 * 1 2 3 26 26 H 1.09007 * 109.47458 * 210.00210 * 1 2 3 27 27 H 1.09003 * 109.47063 * 329.99832 * 1 2 3 28 28 H 1.07999 * 119.79412 * 359.72117 * 3 2 1 29 29 H 1.07996 * 120.05384 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46944 * 300.00112 * 11 10 8 31 31 H 1.08998 * 109.47109 * 59.99552 * 11 10 8 32 32 H 0.96996 * 119.99664 * 359.97438 * 14 12 11 33 33 H 0.97000 * 120.00107 * 180.02562 * 18 17 15 34 34 H 0.96999 * 120.00194 * 24.92231 * 24 23 2 35 35 H 0.97004 * 119.99895 * 204.90981 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1957 0.0000 4 6 3.5835 1.2068 0.0005 5 9 4.2464 2.3840 0.0000 6 6 4.2893 0.0215 0.0005 7 6 3.6043 -1.1971 -0.0005 8 6 4.3511 -2.4667 0.0000 9 8 3.7569 -3.5211 -0.1090 10 8 5.6932 -2.4590 0.1214 11 6 6.3632 -3.7472 0.1147 12 6 7.8490 -3.5415 0.2600 13 8 8.2990 -2.4196 0.3599 14 7 8.6777 -4.6043 0.2799 15 6 10.0293 -4.4171 0.4127 16 1 10.4301 -3.4181 0.5008 17 6 10.8836 -5.5127 0.4327 18 7 10.3961 -6.7283 0.3249 19 14 12.7253 -5.2579 0.6143 20 1 13.0047 -4.5615 1.8957 21 1 13.4103 -6.5754 0.6077 22 1 13.2248 -4.4341 -0.5159 23 6 2.2003 -1.2035 -0.0005 24 7 1.5078 -2.4081 -0.0016 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6518 2.1285 -0.0046 29 1 5.3691 0.0350 0.0014 30 1 5.9974 -4.3513 0.9451 31 1 6.1570 -4.2590 -0.8253 32 1 8.3176 -5.5015 0.2011 33 1 10.9925 -7.4931 0.3393 34 1 0.6057 -2.4487 -0.3560 35 1 1.9264 -3.2086 0.3518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:04 Heat of formation + Delta-G solvation = -140.391384 kcal Electronic energy + Delta-G solvation = -22737.266482 eV Core-core repulsion = 18842.847332 eV Total energy + Delta-G solvation = -3894.419150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.79868 -40.73609 -39.24657 -38.04898 -36.21649 -34.50461 -33.99669 -33.05276 -31.38484 -29.49754 -28.20459 -27.10761 -24.97445 -24.00012 -21.69759 -20.96617 -19.59037 -18.09149 -18.06832 -17.40720 -17.29376 -16.90367 -16.33096 -15.97794 -15.59368 -15.39566 -15.29940 -14.53225 -14.22697 -14.04393 -13.90545 -13.82622 -13.48072 -13.08660 -12.84420 -12.48002 -12.31644 -12.09223 -11.99367 -11.62427 -11.61556 -11.11327 -10.65630 -10.48893 -10.44959 -10.31186 -10.23433 -9.59755 -9.23229 -8.52952 -8.08578 -7.77798 -6.50152 -3.92181 0.48996 1.11669 2.42969 2.65296 3.15699 3.22993 3.27908 3.46390 3.65523 3.73599 4.07953 4.14431 4.37554 4.49070 4.78540 4.93660 5.00064 5.13535 5.14694 5.24127 5.30653 5.37662 5.55703 5.67986 5.76219 5.80967 5.91195 5.98851 6.04747 6.48635 6.60568 7.19042 7.47616 7.60816 7.80889 7.94949 8.48227 9.06854 9.38847 9.88827 10.67027 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028029 B = 0.003007 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.728395 B = 9309.366070 C =10281.060373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.150 4.150 3 C -0.074 4.074 4 C 0.032 3.968 5 F -0.140 7.140 6 C -0.050 4.050 7 C -0.174 4.174 8 C 0.517 3.483 9 O -0.521 6.521 10 O -0.318 6.318 11 C 0.062 3.938 12 C 0.438 3.562 13 O -0.575 6.575 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.270 3.730 24 N -0.856 5.856 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.397 0.603 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 9.371 -0.935 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.011 3.989 5 F -0.119 7.119 6 C -0.070 4.070 7 C -0.181 4.181 8 C 0.364 3.636 9 O -0.412 6.412 10 O -0.232 6.232 11 C -0.016 4.016 12 C 0.223 3.777 13 O -0.459 6.459 14 N -0.189 5.189 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C 0.160 3.840 24 N -0.402 5.402 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -20.230 9.618 -0.881 22.417 hybrid contribution 0.676 -0.818 -0.008 1.061 sum -19.554 8.800 -0.890 21.461 Atomic orbital electron populations 1.20629 0.89935 1.03231 1.02416 1.19236 0.96430 0.90520 1.09275 1.21006 0.92213 0.98691 0.97469 1.17212 0.89941 0.81257 1.10473 1.91502 1.80842 1.44886 1.94674 1.21398 1.01973 0.89670 0.93924 1.18425 0.90984 0.91104 1.17567 1.20842 0.81448 0.88729 0.72594 1.90618 1.69523 1.33206 1.47901 1.86609 1.19346 1.34931 1.82340 1.22776 0.92914 0.82351 1.03524 1.19306 0.86081 0.86293 0.86067 1.90566 1.76942 1.23345 1.55027 1.41688 1.06781 1.07216 1.63262 1.19683 0.80661 0.95265 1.47580 0.87640 1.25309 1.00993 0.94524 0.96889 1.69604 1.36724 0.98088 1.49426 0.85857 0.81388 0.77398 0.79251 1.19736 1.20870 1.19729 1.17439 0.88837 0.87187 0.90508 1.42918 1.18847 1.09292 1.69094 0.91147 0.91407 0.90964 0.84311 0.82643 0.89440 0.89415 0.77165 0.91574 0.77310 0.74782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 9.44 36.00 0.34 -0.26 16 2 C -0.15 -1.36 5.89 -104.47 -0.62 -1.98 16 3 C -0.07 -0.70 9.65 -39.48 -0.38 -1.08 16 4 C 0.03 0.39 7.28 -39.49 -0.29 0.10 16 5 F -0.14 -1.81 17.26 2.25 0.04 -1.78 16 6 C -0.05 -0.68 9.58 -39.11 -0.37 -1.05 16 7 C -0.17 -2.40 5.89 -104.82 -0.62 -3.02 16 8 C 0.52 8.37 7.86 34.41 0.27 8.65 16 9 O -0.52 -8.47 13.61 -19.28 -0.26 -8.73 16 10 O -0.32 -5.99 9.02 -47.35 -0.43 -6.41 16 11 C 0.06 1.17 5.95 36.01 0.21 1.39 16 12 C 0.44 10.55 7.86 -10.98 -0.09 10.47 16 13 O -0.57 -15.99 16.08 -14.11 -0.23 -16.21 16 14 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 16 15 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 16 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 19 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.27 3.03 6.74 -83.58 -0.56 2.46 16 24 N -0.86 -8.14 8.08 32.56 0.26 -7.87 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.34 6.99 -51.92 -0.36 -0.02 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.16 2.26 7.62 -52.49 -0.40 1.86 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.40 2.62 7.52 -40.82 -0.31 2.31 16 35 H 0.41 4.54 6.14 -40.82 -0.25 4.29 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -31.93 316.80 -5.80 -37.73 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -3.26 Total: 12.39 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -2.34 Total: 7.72 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.93 Total: -45.22 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.92 Total: -31.35 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.93 -5.80 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.659 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds