Wall clock time and date at job start Tue Mar 31 2020 04:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37995 * 119.95121 * 2 1 4 4 C 1.38763 * 120.41299 * 179.97438 * 3 2 1 5 5 F 1.35099 * 119.84708 * 179.97438 * 4 3 2 6 6 C 1.37952 * 120.30774 * 0.02562 * 4 3 2 7 7 C 1.39790 * 119.89167 * 0.02562 * 6 4 3 8 8 C 1.47294 * 120.19832 * 180.02562 * 7 6 4 9 9 O 1.21521 * 120.00092 * 185.89304 * 8 7 6 10 10 O 1.34765 * 120.00308 * 5.89406 * 8 7 6 11 11 C 1.45195 * 117.00482 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47503 * 180.02562 * 11 10 8 13 13 O 1.21287 * 119.99875 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99907 * 179.97438 * 12 11 10 15 15 C 1.37094 * 119.99467 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00755 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99648 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00126 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00285 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47070 * 59.99242 * 19 17 15 21 21 H 1.48493 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46935 * 299.99811 * 19 17 15 23 23 C 1.38894 * 119.94811 * 180.02562 * 2 1 3 24 24 N 1.38954 * 120.15559 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47401 * 89.99952 * 1 2 3 26 26 H 1.09007 * 109.47458 * 210.00210 * 1 2 3 27 27 H 1.09003 * 109.47063 * 329.99832 * 1 2 3 28 28 H 1.07999 * 119.79412 * 359.72117 * 3 2 1 29 29 H 1.07996 * 120.05384 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.46944 * 300.00112 * 11 10 8 31 31 H 1.08998 * 109.47109 * 59.99552 * 11 10 8 32 32 H 0.96996 * 119.99664 * 359.97438 * 14 12 11 33 33 H 0.97000 * 120.00107 * 180.02562 * 18 17 15 34 34 H 0.96999 * 120.00194 * 24.92231 * 24 23 2 35 35 H 0.97004 * 119.99895 * 204.90981 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1957 0.0000 4 6 3.5835 1.2068 0.0005 5 9 4.2464 2.3840 0.0000 6 6 4.2893 0.0215 0.0005 7 6 3.6043 -1.1971 -0.0005 8 6 4.3511 -2.4667 0.0000 9 8 3.7569 -3.5211 -0.1090 10 8 5.6932 -2.4590 0.1214 11 6 6.3632 -3.7472 0.1147 12 6 7.8490 -3.5415 0.2600 13 8 8.2990 -2.4196 0.3599 14 7 8.6777 -4.6043 0.2799 15 6 10.0293 -4.4171 0.4127 16 1 10.4301 -3.4181 0.5008 17 6 10.8836 -5.5127 0.4327 18 7 10.3961 -6.7283 0.3249 19 14 12.7253 -5.2579 0.6143 20 1 13.0047 -4.5615 1.8957 21 1 13.4103 -6.5754 0.6077 22 1 13.2248 -4.4341 -0.5159 23 6 2.2003 -1.2035 -0.0005 24 7 1.5078 -2.4081 -0.0016 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6518 2.1285 -0.0046 29 1 5.3691 0.0350 0.0014 30 1 5.9974 -4.3513 0.9451 31 1 6.1570 -4.2590 -0.8253 32 1 8.3176 -5.5015 0.2011 33 1 10.9925 -7.4931 0.3393 34 1 0.6057 -2.4487 -0.3560 35 1 1.9264 -3.2086 0.3518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:03 Heat of formation + Delta-G solvation = -161.374934 kcal Electronic energy + Delta-G solvation = -22738.176397 eV Core-core repulsion = 18842.847332 eV Total energy + Delta-G solvation = -3895.329065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.76999 -41.91761 -40.47466 -39.76468 -37.57477 -36.06400 -35.37314 -33.87474 -33.42834 -30.57893 -29.60262 -27.82391 -26.74715 -25.23868 -22.56649 -22.13645 -21.45675 -20.09626 -19.15110 -18.46941 -18.27186 -18.01870 -17.71511 -17.51753 -16.89023 -16.58101 -16.34986 -16.24224 -15.77604 -15.71163 -14.89013 -14.74429 -14.54692 -14.18851 -13.98504 -13.85161 -13.57345 -13.52874 -12.96876 -12.91140 -12.81684 -12.52768 -12.50230 -12.13635 -11.90738 -11.71640 -11.59021 -11.23368 -10.53840 -10.13724 -10.08481 -8.62817 -8.53891 -6.04643 -0.46657 0.22769 1.29983 1.31932 1.36636 1.43335 1.54677 1.85317 2.28534 2.51987 2.84447 2.97889 3.11558 3.24976 3.53185 3.65211 3.93210 4.05252 4.11584 4.13756 4.20110 4.40329 4.56860 4.70374 4.86851 4.88567 5.02547 5.19361 5.24609 5.30969 5.35278 5.72215 5.86991 6.33793 6.44860 6.59218 6.86864 7.01138 7.37690 7.91653 8.62928 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028029 B = 0.003007 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.728395 B = 9309.366070 C =10281.060373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 C -0.060 4.060 4 C 0.020 3.980 5 F -0.149 7.149 6 C -0.069 4.069 7 C -0.200 4.200 8 C 0.514 3.486 9 O -0.526 6.526 10 O -0.341 6.341 11 C 0.073 3.927 12 C 0.435 3.565 13 O -0.619 6.619 14 N -0.556 5.556 15 C -0.340 4.340 16 H 0.083 0.917 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.272 3.728 24 N -0.846 5.846 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.413 0.587 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.845 9.506 -1.016 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C -0.079 4.079 4 C -0.001 4.001 5 F -0.128 7.128 6 C -0.089 4.089 7 C -0.206 4.206 8 C 0.362 3.638 9 O -0.418 6.418 10 O -0.256 6.256 11 C -0.004 4.004 12 C 0.222 3.778 13 O -0.505 6.505 14 N -0.194 5.194 15 C -0.469 4.469 16 H 0.101 0.899 17 C -0.208 4.208 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.192 1.192 22 H -0.195 1.195 23 C 0.161 3.839 24 N -0.391 5.391 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.191 0.809 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -22.560 9.717 -0.975 24.582 hybrid contribution 1.242 -0.838 0.014 1.498 sum -21.318 8.878 -0.961 23.113 Atomic orbital electron populations 1.20770 0.86815 1.04693 1.03926 1.19657 0.98362 0.89242 1.06835 1.21360 0.90887 1.00360 0.95338 1.17389 0.91095 0.80337 1.11241 1.91476 1.81304 1.45185 1.94831 1.21222 1.01038 0.90738 0.95882 1.18386 0.92031 0.89773 1.20432 1.21264 0.80397 0.89795 0.72294 1.90601 1.69196 1.33498 1.48460 1.86611 1.21143 1.34708 1.83122 1.22547 0.89302 0.83085 1.05455 1.20123 0.88191 0.85271 0.84261 1.90530 1.78401 1.24983 1.56621 1.41714 1.06462 1.07789 1.63400 1.19686 0.82171 0.94913 1.50131 0.89859 1.26119 1.05083 0.93967 0.95663 1.69661 1.38334 0.98613 1.48850 0.84927 0.76029 0.77917 0.79112 1.19509 1.19229 1.19519 1.17615 0.87908 0.88585 0.89830 1.42905 1.19437 1.08511 1.68246 0.89429 0.90491 0.89083 0.80933 0.85100 0.87204 0.87365 0.76496 0.90897 0.75409 0.75437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.44 71.23 0.67 -0.06 16 2 C -0.14 -2.06 5.89 -19.77 -0.12 -2.17 16 3 C -0.06 -0.98 9.65 22.34 0.22 -0.76 16 4 C 0.02 0.48 7.28 22.33 0.16 0.64 16 5 F -0.15 -3.87 17.26 44.97 0.78 -3.09 16 6 C -0.07 -1.96 9.58 22.58 0.22 -1.74 16 7 C -0.20 -5.54 5.89 -19.99 -0.12 -5.65 16 8 C 0.51 16.91 7.86 70.20 0.55 17.46 16 9 O -0.53 -16.84 13.61 19.77 0.27 -16.57 16 10 O -0.34 -13.27 9.02 -50.37 -0.45 -13.73 16 11 C 0.07 2.81 5.95 71.24 0.42 3.23 16 12 C 0.43 21.68 7.86 87.66 0.69 22.37 16 13 O -0.62 -36.05 16.08 15.75 0.25 -35.80 16 14 N -0.56 -28.86 5.29 -306.98 -1.62 -30.49 16 15 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 16 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 17 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 18 N -0.91 -48.76 13.05 21.66 0.28 -48.48 16 19 Si 1.00 42.39 29.55 68.60 2.03 44.41 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 C 0.27 5.62 6.74 38.70 0.26 5.88 16 24 N -0.85 -14.24 8.08 -50.90 -0.41 -14.66 16 25 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.08 0.44 6.99 -2.38 -0.02 0.42 16 27 H 0.09 0.37 8.08 -2.39 -0.02 0.35 16 28 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.13 4.24 7.62 -2.91 -0.02 4.21 16 30 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 31 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 33 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.41 4.18 7.52 -92.71 -0.70 3.48 16 35 H 0.41 8.32 6.14 -92.71 -0.57 7.75 16 Total: -1.00 -70.89 316.80 4.55 -66.34 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.81 Total: 31.29 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 4.24 Total: 20.77 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -1.75 Total: -93.62 kcal Atomic # 8 Polarization: -66.17 SS G_CDS: 0.07 Total: -66.10 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.89 4.55 -66.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.032 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds