Wall clock time and date at job start Tue Mar 31 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86790 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00072 * 3 2 1 5 5 H 1.48505 * 109.47180 * 30.00098 * 3 2 1 6 6 H 1.48500 * 109.47171 * 149.99806 * 3 2 1 7 7 C 1.38955 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00590 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34799 * 116.99903 * 180.02562 * 13 12 10 15 15 O 1.21563 * 119.99860 * 359.97438 * 14 13 12 16 16 C 1.47111 * 120.00309 * 180.27135 * 14 13 12 17 17 C 1.35292 * 123.15741 * 179.74887 * 16 14 13 18 18 S 1.70938 * 108.81774 * 179.97438 * 17 16 14 19 19 C 1.70770 * 91.14112 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.70988 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49528 * 8.59938 * 20 19 18 22 22 C 1.52996 * 117.49888 * 299.97882 * 20 19 18 23 23 N 1.28623 * 110.57738 * 359.77049 * 19 18 17 24 24 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99259 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47259 * 59.99638 * 12 10 9 27 27 H 1.09004 * 109.46840 * 299.99418 * 12 10 9 28 28 H 1.07994 * 125.59075 * 359.97438 * 17 16 14 29 29 H 1.08998 * 115.54803 * 154.30719 * 20 19 18 30 30 H 1.09001 * 117.50307 * 359.97438 * 21 20 19 31 31 H 1.09003 * 117.49252 * 145.02148 * 21 20 19 32 32 H 1.09003 * 117.49724 * 214.97662 * 22 20 19 33 33 H 1.08998 * 117.50093 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 8 2.1872 -5.9666 0.0016 14 6 1.6720 -7.2123 0.0016 15 8 0.4668 -7.3715 0.0017 16 6 2.5680 -8.3790 0.0082 17 6 2.1205 -9.6557 0.0135 18 16 3.4650 -10.7113 0.0194 19 6 4.5461 -9.3894 0.0135 20 6 6.0483 -9.5094 0.0144 21 6 6.6456 -10.9042 -0.1821 22 6 6.6982 -10.2362 1.1934 23 7 3.9001 -8.2772 0.0030 24 1 -0.4851 0.8400 0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6166 -4.9209 -0.8885 27 1 0.6174 -4.9205 0.8915 28 1 1.0838 -9.9583 0.0140 29 1 6.5875 -8.6654 -0.4157 30 1 5.9521 -11.7351 -0.3115 31 1 7.5781 -10.9780 -0.7417 32 1 7.6654 -9.8707 1.5387 33 1 6.0394 -10.6273 1.9687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:54 Heat of formation + Delta-G solvation = -46.144578 kcal Electronic energy + Delta-G solvation = -20100.371947 eV Core-core repulsion = 16640.419726 eV Total energy + Delta-G solvation = -3459.952220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.76907 -39.49454 -38.07605 -37.43201 -36.07247 -33.95004 -31.34292 -30.92254 -28.60695 -26.43927 -24.82890 -23.87100 -22.87747 -21.19987 -20.07826 -19.53436 -18.86222 -18.02064 -16.84263 -16.70412 -16.41422 -16.18280 -15.50794 -15.05012 -14.71442 -14.52183 -14.07676 -13.88284 -13.77618 -12.99899 -12.68428 -12.31183 -12.28389 -11.99582 -11.91027 -11.58429 -11.29155 -11.10218 -11.00213 -10.68727 -10.40928 -10.38399 -10.25715 -9.99703 -9.86590 -9.56147 -9.12960 -8.46337 -8.03657 -6.45912 -3.87607 0.15868 0.86182 1.23521 1.61603 2.73609 3.01678 3.16521 3.25983 3.32335 3.39476 3.61227 3.78979 4.15102 4.32690 4.47122 4.50018 4.75341 4.81673 4.98181 5.10609 5.16607 5.18830 5.37783 5.47895 5.60086 5.61991 5.70925 5.72725 6.09250 6.51737 7.22228 7.51936 7.83191 7.99644 8.53623 9.11637 9.43971 9.94615 10.71565 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.002881 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.504415 B = 9715.356055 C =10674.486297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.440 3.560 11 O -0.570 6.570 12 C 0.058 3.942 13 O -0.301 6.301 14 C 0.541 3.459 15 O -0.505 6.505 16 C 0.038 3.962 17 C -0.225 4.225 18 S 0.213 5.787 19 C 0.059 3.941 20 C -0.086 4.086 21 C -0.169 4.169 22 C -0.158 4.158 23 N -0.413 5.413 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.194 0.806 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -24.207 0.447 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.225 3.775 11 O -0.454 6.454 12 C -0.020 4.020 13 O -0.214 6.214 14 C 0.382 3.618 15 O -0.395 6.395 16 C -0.095 4.095 17 C -0.366 4.366 18 S 0.471 5.529 19 C -0.221 4.221 20 C -0.108 4.108 21 C -0.207 4.207 22 C -0.197 4.197 23 N -0.126 5.126 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.212 0.788 29 H 0.157 0.843 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.560 -24.576 0.440 25.716 hybrid contribution -1.208 1.790 -0.038 2.160 sum 6.352 -22.786 0.402 23.658 Atomic orbital electron populations 1.69615 1.05990 1.28413 1.49936 1.25303 0.95686 0.99825 0.97000 0.85797 0.79238 0.80439 0.78473 1.20287 1.20840 1.19269 1.19733 0.93489 0.81757 1.48009 0.87625 1.41687 1.09333 1.04020 1.64158 1.19284 0.88358 0.84002 0.85902 1.90585 1.13339 1.86690 1.54759 1.22850 0.90902 0.84605 1.03631 1.86747 1.39253 1.13247 1.82120 1.19870 0.85760 0.83151 0.73028 1.90870 1.14942 1.86948 1.46721 1.19313 0.89023 0.91558 1.09644 1.26666 1.06943 0.96090 1.06944 1.82681 0.94186 1.11358 1.64677 1.26327 1.00238 0.90966 1.04590 1.20456 0.86118 0.98384 1.05794 1.23165 1.03334 0.93888 1.00339 1.23165 1.02899 1.02223 0.91445 1.66931 1.05043 1.27965 1.12692 0.91682 0.77177 0.89329 0.89341 0.78845 0.84315 0.88390 0.87030 0.87187 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 8 H 0.11 3.12 7.16 -52.48 -0.38 2.75 16 9 N -0.55 -14.46 5.29 -10.96 -0.06 -14.52 16 10 C 0.44 11.13 7.86 -10.99 -0.09 11.05 16 11 O -0.57 -16.69 16.08 -14.11 -0.23 -16.92 16 12 C 0.06 1.18 5.96 36.01 0.21 1.39 16 13 O -0.30 -6.36 9.69 -47.45 -0.46 -6.82 16 14 C 0.54 9.89 7.94 34.33 0.27 10.16 16 15 O -0.51 -9.35 16.51 -19.31 -0.32 -9.67 16 16 C 0.04 0.60 6.71 -84.55 -0.57 0.03 16 17 C -0.22 -2.55 10.62 29.68 0.32 -2.24 16 18 S 0.21 1.77 21.65 -107.50 -2.33 -0.56 16 19 C 0.06 0.68 6.99 -13.62 -0.10 0.58 16 20 C -0.09 -0.75 6.33 -91.77 -0.58 -1.33 16 21 C -0.17 -0.93 10.01 -26.73 -0.27 -1.20 16 22 C -0.16 -1.01 10.23 -26.73 -0.27 -1.28 16 23 N -0.41 -6.54 10.60 -8.53 -0.09 -6.63 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 26 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.19 1.81 8.03 -52.49 -0.42 1.39 16 29 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 0.46 7.21 -51.93 -0.37 0.08 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -34.90 319.00 -7.45 -42.35 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.16 Total: 6.65 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.31 Total: 9.06 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.58 Total: -44.99 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.01 Total: -33.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.33 Total: -0.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.90 -7.45 -42.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.799 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds