Wall clock time and date at job start Tue Mar 31 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86790 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00072 * 3 2 1 5 5 H 1.48505 * 109.47180 * 30.00098 * 3 2 1 6 6 H 1.48500 * 109.47171 * 149.99806 * 3 2 1 7 7 C 1.38955 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00590 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34799 * 116.99903 * 180.02562 * 13 12 10 15 15 O 1.21563 * 119.99860 * 359.97438 * 14 13 12 16 16 C 1.47111 * 120.00309 * 180.27135 * 14 13 12 17 17 C 1.35292 * 123.15741 * 179.74887 * 16 14 13 18 18 S 1.70938 * 108.81774 * 179.97438 * 17 16 14 19 19 C 1.70770 * 91.14112 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.70988 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49528 * 8.59938 * 20 19 18 22 22 C 1.52996 * 117.49888 * 299.97882 * 20 19 18 23 23 N 1.28623 * 110.57738 * 359.77049 * 19 18 17 24 24 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99259 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47259 * 59.99638 * 12 10 9 27 27 H 1.09004 * 109.46840 * 299.99418 * 12 10 9 28 28 H 1.07994 * 125.59075 * 359.97438 * 17 16 14 29 29 H 1.08998 * 115.54803 * 154.30719 * 20 19 18 30 30 H 1.09001 * 117.50307 * 359.97438 * 21 20 19 31 31 H 1.09003 * 117.49252 * 145.02148 * 21 20 19 32 32 H 1.09003 * 117.49724 * 214.97662 * 22 20 19 33 33 H 1.08998 * 117.50093 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 8 2.1872 -5.9666 0.0016 14 6 1.6720 -7.2123 0.0016 15 8 0.4668 -7.3715 0.0017 16 6 2.5680 -8.3790 0.0082 17 6 2.1205 -9.6557 0.0135 18 16 3.4650 -10.7113 0.0194 19 6 4.5461 -9.3894 0.0135 20 6 6.0483 -9.5094 0.0144 21 6 6.6456 -10.9042 -0.1821 22 6 6.6982 -10.2362 1.1934 23 7 3.9001 -8.2772 0.0030 24 1 -0.4851 0.8400 0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6166 -4.9209 -0.8885 27 1 0.6174 -4.9205 0.8915 28 1 1.0838 -9.9583 0.0140 29 1 6.5875 -8.6654 -0.4157 30 1 5.9521 -11.7351 -0.3115 31 1 7.5781 -10.9780 -0.7417 32 1 7.6654 -9.8707 1.5387 33 1 6.0394 -10.6273 1.9687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:53 Heat of formation + Delta-G solvation = -70.135848 kcal Electronic energy + Delta-G solvation = -20101.412286 eV Core-core repulsion = 16640.419726 eV Total energy + Delta-G solvation = -3460.992560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00484 -40.73102 -39.94957 -38.10391 -37.57232 -36.07190 -33.45677 -31.88342 -30.27129 -27.56503 -26.54201 -25.10666 -23.32597 -22.08801 -21.50279 -21.17946 -20.13100 -19.90419 -18.13967 -18.01565 -17.88782 -17.23457 -17.05444 -16.51637 -16.16865 -15.84656 -15.53177 -15.22490 -14.92615 -14.62860 -13.98908 -13.74449 -13.58641 -13.33811 -13.10260 -12.96099 -12.50664 -12.41033 -12.13745 -12.06198 -11.96362 -11.94620 -11.61096 -11.50034 -10.87210 -10.68474 -10.56182 -10.14973 -9.93129 -8.54903 -6.05891 -0.75268 0.07759 0.34368 0.50240 1.33770 1.34965 1.43559 1.56466 1.81925 1.87760 2.27583 2.62929 2.93990 3.06620 3.10063 3.51631 3.76649 3.85416 3.98697 4.01737 4.03303 4.08603 4.17368 4.36647 4.57935 4.74764 4.99244 5.05756 5.07606 5.20325 5.34250 5.85252 6.19662 6.44755 6.61319 6.99849 7.35713 7.90219 8.62328 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.002881 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.504415 B = 9715.356055 C =10674.486297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.083 0.917 9 N -0.555 5.555 10 C 0.435 3.565 11 O -0.618 6.618 12 C 0.068 3.932 13 O -0.330 6.330 14 C 0.539 3.461 15 O -0.516 6.516 16 C -0.004 4.004 17 C -0.221 4.221 18 S 0.334 5.666 19 C 0.039 3.961 20 C -0.121 4.121 21 C -0.143 4.143 22 C -0.154 4.154 23 N -0.471 5.471 24 H 0.282 0.718 25 H 0.401 0.599 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.213 0.787 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -26.354 0.509 27.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.101 0.899 9 N -0.193 5.193 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.009 4.009 13 O -0.244 6.244 14 C 0.382 3.618 15 O -0.406 6.406 16 C -0.138 4.138 17 C -0.364 4.364 18 S 0.593 5.407 19 C -0.240 4.240 20 C -0.143 4.143 21 C -0.181 4.181 22 C -0.193 4.193 23 N -0.186 5.186 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.230 0.770 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.598 -26.752 0.500 27.814 hybrid contribution -1.208 2.285 -0.055 2.586 sum 6.389 -24.466 0.446 25.291 Atomic orbital electron populations 1.69670 1.06952 1.29830 1.49011 1.26151 0.96627 1.02592 0.95511 0.84836 0.77875 0.76195 0.78874 1.19343 1.19149 1.19611 1.19730 0.92927 0.83387 1.50864 0.89940 1.41707 1.09543 1.04042 1.63997 1.20053 0.88052 0.85373 0.84320 1.90544 1.15587 1.87649 1.56665 1.22648 0.90135 0.82398 1.05711 1.86738 1.40167 1.14517 1.82948 1.20383 0.86358 0.82765 0.72284 1.90832 1.15277 1.86906 1.47588 1.19124 0.89153 0.91594 1.13905 1.27105 1.09442 0.95596 1.04238 1.82177 0.90127 1.07102 1.61268 1.26805 1.01847 0.91816 1.03504 1.20562 0.84926 1.00091 1.08738 1.23328 1.03717 0.91738 0.99316 1.23303 1.03016 1.01305 0.91635 1.66882 1.05608 1.30948 1.15172 0.90854 0.76460 0.87114 0.87120 0.76963 0.86007 0.86936 0.85279 0.86271 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.64 13.05 21.66 0.28 -49.36 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.15 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.34 -19.83 9.68 84.04 0.81 -19.02 16 8 H 0.08 5.11 7.16 -2.91 -0.02 5.09 16 9 N -0.56 -29.89 5.29 -306.98 -1.62 -31.51 16 10 C 0.44 22.92 7.86 87.66 0.69 23.61 16 11 O -0.62 -38.06 16.08 15.72 0.25 -37.81 16 12 C 0.07 2.85 5.96 71.24 0.42 3.28 16 13 O -0.33 -14.55 9.69 -50.72 -0.49 -15.04 16 14 C 0.54 20.26 7.94 70.15 0.56 20.82 16 15 O -0.52 -19.17 16.51 19.63 0.32 -18.84 16 16 C 0.00 -0.14 6.71 40.52 0.27 0.13 16 17 C -0.22 -4.66 10.62 67.14 0.71 -3.95 16 18 S 0.33 4.54 21.65 -56.49 -1.22 3.32 16 19 C 0.04 0.87 6.99 88.58 0.62 1.49 16 20 C -0.12 -2.05 6.33 -11.54 -0.07 -2.12 16 21 C -0.14 -1.16 10.01 30.59 0.31 -0.85 16 22 C -0.15 -1.65 10.23 30.59 0.31 -1.34 16 23 N -0.47 -15.41 10.60 -180.90 -1.92 -17.32 16 24 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.40 20.16 7.90 -92.71 -0.73 19.42 16 26 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 27 H 0.11 4.08 8.14 -2.38 -0.02 4.06 16 28 H 0.21 3.46 8.03 -2.91 -0.02 3.43 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.11 0.57 7.21 -2.39 -0.02 0.55 16 31 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -79.09 319.00 3.17 -75.91 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.44 Total: 23.42 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.10 Total: 22.08 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -3.26 Total: -98.20 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: 0.09 Total: -71.69 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.22 Total: 3.32 kcal Total: -79.09 3.17 -75.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.779 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds