Wall clock time and date at job start Tue Mar 31 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76195 * 102.99950 * 2 1 4 4 C 1.39190 * 119.64434 * 179.97438 * 3 2 1 5 5 C 1.39520 * 118.91858 * 179.97438 * 4 3 2 6 6 C 1.48063 * 120.88421 * 179.97438 * 5 4 3 7 7 O 1.21429 * 119.99670 * 359.97438 * 6 5 4 8 8 O 1.34667 * 120.00021 * 180.02562 * 6 5 4 9 9 C 1.45194 * 116.99780 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47090 * 179.97438 * 9 8 6 11 11 O 1.21295 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99737 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47026 * 90.00208 * 17 15 13 19 19 H 1.48496 * 109.47474 * 210.00244 * 17 15 13 20 20 H 1.48504 * 109.47117 * 330.00775 * 17 15 13 21 21 C 1.40086 * 118.22991 * 0.25178 * 5 4 3 22 22 C 1.37949 * 119.18526 * 359.52603 * 21 5 4 23 23 N 1.31912 * 121.00858 * 0.48240 * 22 21 5 24 24 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47500 * 299.99821 * 1 2 3 26 26 H 1.09003 * 109.47373 * 59.99622 * 1 2 3 27 27 H 1.07997 * 120.54165 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46972 * 59.99836 * 9 8 6 29 29 H 1.09000 * 109.47619 * 300.00042 * 9 8 6 30 30 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 31 31 H 0.96999 * 120.00288 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.40415 * 179.72315 * 21 5 4 33 33 H 1.08002 * 119.49564 * 180.23102 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5439 2.1155 0.0005 5 6 3.8405 3.4788 0.0000 6 6 5.2437 3.9513 0.0011 7 8 6.1547 3.1484 0.0030 8 8 5.5096 5.2715 0.0011 9 6 6.9080 5.6621 0.0028 10 6 7.0096 7.1658 0.0018 11 8 6.0023 7.8416 0.0004 12 7 8.2195 7.7595 0.0036 13 6 8.3118 9.1273 0.0033 14 1 7.4149 9.7291 0.0020 15 6 9.5592 9.7395 0.0057 16 7 10.6504 9.0073 0.0078 17 14 9.6850 11.6032 0.0046 18 1 9.7152 12.0982 1.4043 19 1 10.9296 12.0149 -0.6929 20 1 8.5101 12.1783 -0.6985 21 6 2.7753 4.3887 0.0043 22 6 1.4816 3.9098 -0.0010 23 7 1.2367 2.6137 -0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.3361 1.3815 0.0014 28 1 7.3974 5.2647 -0.8865 29 1 7.3952 5.2653 0.8935 30 1 9.0249 7.2190 0.0052 31 1 11.5212 9.4346 0.0091 32 1 2.9647 5.4519 0.0086 33 1 0.6566 4.6069 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:15 Heat of formation + Delta-G solvation = -84.269408 kcal Electronic energy + Delta-G solvation = -19991.416686 eV Core-core repulsion = 16529.811249 eV Total energy + Delta-G solvation = -3461.605437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87572 -39.73297 -38.16516 -36.25783 -34.05391 -33.19005 -31.67375 -31.42494 -29.27412 -28.56355 -25.53495 -24.45544 -23.91082 -21.49915 -19.65943 -18.84761 -18.14092 -17.38112 -16.61907 -16.47009 -16.32786 -15.94602 -15.46963 -14.94294 -14.76656 -14.50904 -14.20937 -14.08304 -13.98566 -13.59167 -13.22598 -12.91039 -12.42897 -12.26820 -12.01235 -11.65727 -11.16737 -10.89845 -10.84497 -10.54595 -10.47070 -10.40722 -10.33565 -10.11786 -10.03218 -9.64700 -8.58743 -8.12807 -7.91745 -6.53813 -3.96110 0.26976 0.64574 1.06574 1.89656 2.38683 2.45265 3.10498 3.21301 3.27029 3.40423 3.68337 4.04430 4.18386 4.32843 4.60348 4.65296 4.79793 4.86117 4.88593 4.98925 5.10763 5.29389 5.33122 5.44546 5.51863 5.61728 5.78142 5.98439 6.13220 6.40226 7.30852 7.44116 7.63039 7.89743 8.43394 9.02759 9.34408 9.83722 10.63256 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.002481 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.852702 B =11282.961968 C =11823.368271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.071 6.071 3 C 0.108 3.892 4 C -0.088 4.088 5 C -0.054 4.054 6 C 0.506 3.494 7 O -0.498 6.498 8 O -0.316 6.316 9 C 0.061 3.939 10 C 0.438 3.562 11 O -0.576 6.576 12 N -0.551 5.551 13 C -0.303 4.303 14 H 0.107 0.893 15 C 0.025 3.975 16 N -0.896 5.896 17 Si 0.935 3.065 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.118 4.118 22 C 0.109 3.891 23 N -0.472 5.472 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.395 0.605 31 H 0.274 0.726 32 H 0.162 0.838 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.777 -15.701 -0.014 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.168 5.832 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.064 4.064 6 C 0.348 3.652 7 O -0.387 6.387 8 O -0.230 6.230 9 C -0.016 4.016 10 C 0.222 3.778 11 O -0.461 6.461 12 N -0.188 5.188 13 C -0.432 4.432 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.536 5.536 17 Si 0.761 3.239 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.141 4.141 22 C -0.051 4.051 23 N -0.186 5.186 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.172 0.828 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.165 -16.724 -0.020 23.259 hybrid contribution 0.926 1.942 0.013 2.152 sum -15.239 -14.781 -0.007 21.230 Atomic orbital electron populations 1.23472 0.93499 1.06181 1.06836 1.85630 1.07950 0.98014 1.91636 1.22925 0.91344 0.98879 1.00864 1.21761 0.96490 0.95257 0.97932 1.19368 0.91075 0.93579 1.02409 1.20984 0.89091 0.81588 0.73498 1.90839 1.46791 1.55867 1.45220 1.86566 1.30399 1.23354 1.82701 1.22846 0.78314 0.96646 1.03837 1.19253 0.85137 0.87168 0.86214 1.90560 1.35413 1.64677 1.55409 1.41697 1.05685 1.07792 1.63612 1.19725 0.94253 0.80926 1.48308 0.87564 1.25328 0.94658 1.00966 0.96803 1.69611 0.98108 1.36475 1.49440 0.85787 0.77929 0.81645 0.78527 1.20229 1.20787 1.19256 1.22647 0.92532 1.02391 0.96482 1.22784 0.96250 0.91155 0.94901 1.67878 1.35059 1.03112 1.12539 0.87792 0.89342 0.89343 0.82782 0.89217 0.89208 0.77111 0.91566 0.82078 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 10.01 101.05 1.01 0.15 16 2 S -0.07 -0.65 22.55 -107.50 -2.42 -3.07 16 3 C 0.11 1.23 7.00 -16.97 -0.12 1.11 16 4 C -0.09 -1.07 9.41 -38.75 -0.36 -1.44 16 5 C -0.05 -0.71 5.90 -104.70 -0.62 -1.33 16 6 C 0.51 8.05 7.92 34.76 0.28 8.32 16 7 O -0.50 -8.63 16.23 -19.21 -0.31 -8.94 16 8 O -0.32 -5.68 9.11 -47.08 -0.43 -6.11 16 9 C 0.06 1.12 5.95 36.01 0.21 1.34 16 10 C 0.44 10.26 7.86 -10.98 -0.09 10.18 16 11 O -0.58 -15.52 16.08 -14.12 -0.23 -15.75 16 12 N -0.55 -13.65 5.29 -10.96 -0.06 -13.70 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 14 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 15 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -23.73 13.05 55.50 0.72 -23.00 16 17 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C -0.12 -1.36 9.70 -38.99 -0.38 -1.73 16 22 C 0.11 1.08 11.16 -17.62 -0.20 0.88 16 23 N -0.47 -5.22 9.40 -12.16 -0.11 -5.34 16 24 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.15 1.77 7.74 -52.49 -0.41 1.37 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 9.28 7.90 -40.82 -0.32 8.95 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.16 1.83 7.71 -52.49 -0.40 1.43 16 33 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -31.82 320.24 -6.72 -38.53 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.18 Total: 7.49 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.50 Total: 9.68 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.55 Total: -42.05 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.97 Total: -30.80 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.42 Total: -3.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.82 -6.72 -38.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.735 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds