Wall clock time and date at job start Tue Mar 31 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76195 * 102.99950 * 2 1 4 4 C 1.39190 * 119.64434 * 179.97438 * 3 2 1 5 5 C 1.39520 * 118.91858 * 179.97438 * 4 3 2 6 6 C 1.48063 * 120.88421 * 179.97438 * 5 4 3 7 7 O 1.21429 * 119.99670 * 359.97438 * 6 5 4 8 8 O 1.34667 * 120.00021 * 180.02562 * 6 5 4 9 9 C 1.45194 * 116.99780 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47090 * 179.97438 * 9 8 6 11 11 O 1.21295 * 119.99584 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99737 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00254 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99943 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47026 * 90.00208 * 17 15 13 19 19 H 1.48496 * 109.47474 * 210.00244 * 17 15 13 20 20 H 1.48504 * 109.47117 * 330.00775 * 17 15 13 21 21 C 1.40086 * 118.22991 * 0.25178 * 5 4 3 22 22 C 1.37949 * 119.18526 * 359.52603 * 21 5 4 23 23 N 1.31912 * 121.00858 * 0.48240 * 22 21 5 24 24 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47500 * 299.99821 * 1 2 3 26 26 H 1.09003 * 109.47373 * 59.99622 * 1 2 3 27 27 H 1.07997 * 120.54165 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46972 * 59.99836 * 9 8 6 29 29 H 1.09000 * 109.47619 * 300.00042 * 9 8 6 30 30 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 31 31 H 0.96999 * 120.00288 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.40415 * 179.72315 * 21 5 4 33 33 H 1.08002 * 119.49564 * 180.23102 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5439 2.1155 0.0005 5 6 3.8405 3.4788 0.0000 6 6 5.2437 3.9513 0.0011 7 8 6.1547 3.1484 0.0030 8 8 5.5096 5.2715 0.0011 9 6 6.9080 5.6621 0.0028 10 6 7.0096 7.1658 0.0018 11 8 6.0023 7.8416 0.0004 12 7 8.2195 7.7595 0.0036 13 6 8.3118 9.1273 0.0033 14 1 7.4149 9.7291 0.0020 15 6 9.5592 9.7395 0.0057 16 7 10.6504 9.0073 0.0078 17 14 9.6850 11.6032 0.0046 18 1 9.7152 12.0982 1.4043 19 1 10.9296 12.0149 -0.6929 20 1 8.5101 12.1783 -0.6985 21 6 2.7753 4.3887 0.0043 22 6 1.4816 3.9098 -0.0010 23 7 1.2367 2.6137 -0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.3361 1.3815 0.0014 28 1 7.3974 5.2647 -0.8865 29 1 7.3952 5.2653 0.8935 30 1 9.0249 7.2190 0.0052 31 1 11.5212 9.4346 0.0091 32 1 2.9647 5.4519 0.0086 33 1 0.6566 4.6069 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731246616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:14 Heat of formation + Delta-G solvation = -104.215033 kcal Electronic energy + Delta-G solvation = -19992.281594 eV Core-core repulsion = 16529.811249 eV Total energy + Delta-G solvation = -3462.470344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03698 -40.85502 -39.97809 -37.67339 -36.04809 -34.15536 -33.42340 -32.53326 -30.24149 -29.71649 -27.00185 -25.96237 -24.82171 -22.64523 -21.47767 -20.09906 -19.96404 -18.56505 -17.85768 -17.85738 -17.49020 -17.07971 -16.84320 -16.39187 -15.92699 -15.87603 -15.56693 -15.38138 -14.92684 -14.71902 -14.25859 -13.99913 -13.85294 -13.57464 -13.51989 -12.95933 -12.94709 -12.48291 -12.15179 -12.10710 -11.98023 -11.58599 -11.55548 -11.35059 -10.96266 -10.93185 -10.53688 -10.12953 -8.65419 -8.53156 -6.03816 -0.73124 -0.21936 0.30952 1.14348 1.23311 1.27627 1.35685 1.43883 1.56721 1.85350 2.28057 2.49094 2.89817 3.12446 3.37751 3.40591 3.72167 3.74512 3.89979 4.07237 4.11269 4.19273 4.35979 4.39337 4.46129 4.52127 4.87400 4.95713 5.05927 5.29492 5.36509 5.87438 6.33453 6.46072 6.48384 7.01714 7.38316 7.91169 8.63742 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.002481 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.852702 B =11282.961968 C =11823.368271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.076 6.076 3 C 0.102 3.898 4 C -0.095 4.095 5 C -0.069 4.069 6 C 0.510 3.490 7 O -0.516 6.516 8 O -0.330 6.330 9 C 0.071 3.929 10 C 0.437 3.563 11 O -0.615 6.615 12 N -0.557 5.557 13 C -0.337 4.337 14 H 0.086 0.914 15 C -0.009 4.009 16 N -0.915 5.915 17 Si 0.998 3.002 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.121 4.121 22 C 0.118 3.882 23 N -0.475 5.475 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.400 0.600 31 H 0.281 0.719 32 H 0.160 0.840 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -16.216 0.000 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.163 5.837 3 C -0.146 4.146 4 C -0.121 4.121 5 C -0.080 4.080 6 C 0.354 3.646 7 O -0.405 6.405 8 O -0.245 6.245 9 C -0.006 4.006 10 C 0.224 3.776 11 O -0.502 6.502 12 N -0.194 5.194 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.210 4.210 16 N -0.555 5.555 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.144 4.144 22 C -0.041 4.041 23 N -0.189 5.189 24 H 0.147 0.853 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.173 0.827 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.235 0.765 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.188 -17.279 -0.004 24.372 hybrid contribution 1.152 2.001 0.009 2.308 sum -16.036 -15.279 0.005 22.149 Atomic orbital electron populations 1.23580 0.91039 1.07828 1.06863 1.85684 1.10602 0.96318 1.91103 1.23217 0.91077 1.00139 1.00178 1.21804 0.97147 0.94756 0.98390 1.19311 0.89848 0.94450 1.04351 1.21382 0.90123 0.80509 0.72567 1.90821 1.47583 1.55891 1.46214 1.86557 1.29864 1.24830 1.83202 1.22636 0.79341 0.92842 1.05822 1.20006 0.84083 0.89235 0.84278 1.90527 1.36566 1.66354 1.56746 1.41733 1.06409 1.07368 1.63937 1.19722 0.94182 0.82078 1.50624 0.89623 1.26138 0.93914 1.05310 0.95665 1.69670 0.98547 1.38165 1.49110 0.84849 0.78052 0.76192 0.78790 1.19464 1.19521 1.19464 1.22710 0.92877 1.02095 0.96724 1.23308 0.96481 0.91346 0.92981 1.67990 1.34858 1.03461 1.12566 0.85314 0.89268 0.89269 0.82721 0.87158 0.87144 0.76528 0.90961 0.82214 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.01 113.37 1.14 -0.20 16 2 S -0.08 -1.28 22.55 -56.49 -1.27 -2.55 16 3 C 0.10 2.18 7.00 84.84 0.59 2.78 16 4 C -0.09 -2.26 9.41 22.81 0.21 -2.05 16 5 C -0.07 -1.82 5.90 -19.91 -0.12 -1.93 16 6 C 0.51 16.17 7.92 70.43 0.56 16.72 16 7 O -0.52 -17.70 16.23 20.06 0.33 -17.38 16 8 O -0.33 -11.85 9.11 -49.38 -0.45 -12.30 16 9 C 0.07 2.58 5.95 71.24 0.42 3.00 16 10 C 0.44 20.80 7.86 87.66 0.69 21.49 16 11 O -0.62 -33.91 16.08 15.72 0.25 -33.65 16 12 N -0.56 -28.03 5.29 -306.98 -1.62 -29.65 16 13 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 14 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 15 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 16 N -0.92 -48.07 13.05 21.66 0.28 -47.79 16 17 Si 1.00 41.49 29.55 68.60 2.03 43.51 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 C -0.12 -2.69 9.70 22.65 0.22 -2.47 16 22 C 0.12 2.12 11.16 84.61 0.94 3.07 16 23 N -0.47 -9.62 9.40 -192.38 -1.81 -11.43 16 24 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 3.56 7.74 -2.91 -0.02 3.53 16 28 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 31 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.16 3.58 7.71 -2.91 -0.02 3.56 16 33 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.15 320.24 4.11 -64.04 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.43 Total: 24.59 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 5.94 Total: 22.61 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -3.15 Total: -88.87 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: 0.13 Total: -63.33 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -1.27 Total: -2.55 kcal Total: -68.15 4.11 -64.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.176 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds