Wall clock time and date at job start Tue Mar 31 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30926 * 123.07894 * 2 1 4 4 C 1.29371 * 117.49902 * 180.33817 * 3 2 1 5 5 S 1.70917 * 110.65211 * 359.70600 * 4 3 2 6 6 C 1.37118 * 123.07834 * 179.80061 * 2 1 3 7 7 C 1.41649 * 126.19379 * 359.97312 * 6 2 1 8 8 C 1.35688 * 120.00329 * 133.97176 * 7 6 2 9 9 C 1.41282 * 119.99593 * 350.26868 * 8 7 6 10 10 O 1.21702 * 120.00538 * 353.50417 * 9 8 7 11 11 O 1.35001 * 119.99999 * 173.50467 * 9 8 7 12 12 C 1.42892 * 117.00128 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47158 * 180.02562 * 12 11 9 14 14 O 1.21292 * 119.99727 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99733 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00353 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00048 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99851 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00234 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47052 * 89.99992 * 20 18 16 22 22 H 1.48497 * 109.46867 * 209.99908 * 20 18 16 23 23 H 1.48499 * 109.46911 * 330.00014 * 20 18 16 24 24 H 1.09003 * 109.46971 * 270.20562 * 1 2 3 25 25 H 1.09002 * 109.47396 * 30.20268 * 1 2 3 26 26 H 1.09007 * 109.47428 * 150.20410 * 1 2 3 27 27 H 1.08004 * 124.67838 * 179.67431 * 4 3 2 28 28 H 1.08008 * 119.99954 * 313.96847 * 7 6 2 29 29 H 1.07999 * 119.99994 * 170.26390 * 8 7 6 30 30 H 1.09002 * 109.47509 * 299.99735 * 12 11 9 31 31 H 1.08998 * 109.47069 * 60.00404 * 12 11 9 32 32 H 0.96988 * 119.99875 * 359.97438 * 15 13 12 33 33 H 0.97005 * 119.99955 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2216 1.0971 0.0000 4 6 3.5092 0.9713 -0.0068 5 16 3.9536 -0.6791 -0.0061 6 6 2.2554 -1.1489 0.0040 7 6 1.7540 -2.4737 0.0091 8 6 2.2766 -3.4002 -0.8333 9 6 3.1704 -3.0034 -1.8529 10 8 3.3804 -1.8213 -2.0521 11 8 3.7917 -3.9355 -2.6064 12 6 4.6816 -3.4630 -3.6196 13 6 5.2769 -4.6374 -4.3528 14 8 4.9696 -5.7678 -4.0383 15 7 6.1515 -4.4315 -5.3574 16 6 6.6934 -5.4999 -6.0241 17 1 6.4199 -6.5064 -5.7440 18 6 7.5947 -5.2878 -7.0601 19 7 7.9272 -4.0630 -7.4013 20 14 8.3326 -6.7434 -7.9690 21 1 7.4687 -7.0951 -9.1245 22 1 9.6894 -6.3868 -8.4558 23 1 8.4262 -7.9054 -7.0492 24 1 -0.3633 0.0037 1.0277 25 1 -0.3634 0.8882 -0.5170 26 1 -0.3634 -0.8918 -0.5107 27 1 4.2071 1.7955 -0.0126 28 1 0.9558 -2.7465 0.6837 29 1 2.0093 -4.4409 -0.7243 30 1 4.1322 -2.8369 -4.3226 31 1 5.4789 -2.8794 -3.1595 32 1 6.3975 -3.5276 -5.6087 33 1 8.5561 -3.9149 -8.1248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777093183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:46 Heat of formation + Delta-G solvation = -68.866187 kcal Electronic energy + Delta-G solvation = -20467.083677 eV Core-core repulsion = 17006.146174 eV Total energy + Delta-G solvation = -3460.937503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86296 -40.71589 -40.05462 -37.86686 -36.04698 -35.40734 -33.42793 -32.29173 -30.32248 -28.58361 -26.70130 -25.94446 -24.50421 -21.50618 -21.45207 -20.34457 -20.09333 -19.01044 -18.61545 -17.80130 -17.72785 -17.35628 -16.65470 -16.01380 -15.92720 -15.75150 -15.52768 -14.74540 -14.69072 -14.44525 -14.12366 -13.88124 -13.56921 -13.47253 -13.34349 -13.21275 -12.94745 -12.48719 -12.43662 -12.12640 -11.95241 -11.80922 -11.58464 -11.04480 -10.57009 -10.51565 -10.12971 -9.47916 -9.36900 -8.53368 -6.04176 -0.99832 0.30335 0.65633 0.84893 1.35243 1.41075 1.52686 1.66276 1.72679 1.85941 2.08704 2.31061 3.12132 3.12996 3.34833 3.82316 3.92393 4.06957 4.14994 4.16102 4.21302 4.25252 4.50642 4.73579 4.80670 4.90510 5.00111 5.12899 5.35180 5.38002 5.42228 5.88106 6.45107 6.69893 6.76135 7.01885 7.38771 7.92406 8.63720 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.002989 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.975671 B = 9365.912311 C = 9828.975972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.091 3.909 3 N -0.507 5.507 4 C 0.003 3.997 5 S 0.209 5.791 6 C -0.260 4.260 7 C 0.063 3.937 8 C -0.215 4.215 9 C 0.476 3.524 10 O -0.519 6.519 11 O -0.341 6.341 12 C 0.075 3.925 13 C 0.436 3.564 14 O -0.618 6.618 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.084 0.916 18 C -0.009 4.009 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.270 1.270 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.222 0.778 28 H 0.200 0.800 29 H 0.172 0.828 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.399 0.601 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 9.250 16.533 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.222 5.222 4 C -0.289 4.289 5 S 0.469 5.531 6 C -0.381 4.381 7 C 0.043 3.957 8 C -0.237 4.237 9 C 0.325 3.675 10 O -0.413 6.413 11 O -0.256 6.256 12 C -0.003 4.003 13 C 0.223 3.777 14 O -0.505 6.505 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.209 4.209 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.194 1.194 23 H -0.195 1.195 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.238 0.762 28 H 0.217 0.783 29 H 0.190 0.810 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.746 9.027 16.522 21.678 hybrid contribution 0.066 0.153 -1.050 1.064 sum -10.681 9.180 15.471 20.921 Atomic orbital electron populations 1.20516 0.84850 1.04092 1.04440 1.21476 0.99222 0.85144 0.98835 1.65910 1.05731 1.32496 1.18042 1.28962 0.95414 1.01681 1.02887 1.83914 1.06255 1.02207 1.60743 1.23864 0.96776 0.99442 1.18054 1.21140 0.94026 0.87080 0.93458 1.21675 1.01566 1.03669 0.96782 1.20877 0.79743 0.83800 0.83058 1.90999 1.63248 1.18538 1.68478 1.86270 1.54806 1.39979 1.44591 1.22013 0.93627 0.94606 0.90027 1.20163 0.83710 0.90128 0.83724 1.90518 1.64976 1.25831 1.69192 1.41747 1.38302 1.09929 1.29554 1.19730 1.23920 0.88667 1.14482 0.89779 1.26137 0.96690 1.00741 0.97372 1.69676 1.34361 1.21282 1.30256 0.84852 0.77734 0.77221 0.78085 1.19444 1.19357 1.19476 0.88190 0.90820 0.89265 0.76212 0.78309 0.81031 0.88462 0.88091 0.76626 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.09 71.24 0.72 -0.40 16 2 C 0.09 1.95 6.85 42.43 0.29 2.24 16 3 N -0.51 -12.30 10.49 -189.41 -1.99 -14.29 16 4 C 0.00 0.06 12.20 130.60 1.59 1.66 16 5 S 0.21 4.74 19.60 -56.49 -1.11 3.63 16 6 C -0.26 -5.53 4.63 22.85 0.11 -5.42 16 7 C 0.06 1.01 9.12 22.52 0.21 1.21 16 8 C -0.21 -4.52 9.97 22.43 0.22 -4.30 16 9 C 0.48 14.46 7.27 68.57 0.50 14.96 16 10 O -0.52 -16.73 11.36 19.17 0.22 -16.51 16 11 O -0.34 -12.79 9.64 -52.73 -0.51 -13.30 16 12 C 0.08 2.90 5.86 71.24 0.42 3.32 16 13 C 0.44 21.71 7.86 87.66 0.69 22.40 16 14 O -0.62 -35.72 16.08 15.97 0.26 -35.46 16 15 N -0.56 -29.05 5.29 -306.98 -1.62 -30.67 16 16 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 17 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 19 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 20 Si 1.00 42.18 29.55 68.60 2.03 44.21 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 0.98 7.65 -2.38 -0.02 0.96 16 27 H 0.22 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.10 3.44 8.13 -2.39 -0.02 3.43 16 31 H 0.10 3.50 8.13 -2.39 -0.02 3.48 16 32 H 0.40 19.62 7.90 -92.72 -0.73 18.89 16 33 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -74.66 313.12 4.01 -70.64 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.43 Total: 23.10 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.02 Total: 17.28 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.33 Total: -93.59 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -0.03 Total: -65.27 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.11 Total: 3.63 kcal Total: -74.66 4.01 -70.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777093183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds