Wall clock time and date at job start Tue Mar 31 2020 03:52:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34811 * 116.99457 * 2 1
4 4 O 1.21531 * 120.00572 * 0.02562 * 3 2 1
5 5 C 1.47179 * 120.00027 * 180.02562 * 3 2 1
6 6 C 1.38009 * 125.90491 * 180.02562 * 5 3 2
7 7 C 1.39404 * 107.46351 * 179.74265 * 6 5 3
8 8 C 1.38010 * 107.45783 * 0.41523 * 7 6 5
9 9 C 1.47183 * 125.89755 * 179.84016 * 8 7 6
10 10 O 1.21535 * 120.00058 * 359.69822 * 9 8 7
11 11 O 1.34809 * 120.00018 * 179.69497 * 9 8 7
12 12 C 1.45206 * 116.99930 * 180.02562 * 11 9 8
13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 9
14 14 O 1.21297 * 119.99980 * 0.02562 * 13 12 11
15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11
16 16 C 1.37088 * 120.00081 * 180.02562 * 15 13 12
17 17 H 1.08003 * 119.99914 * 359.97438 * 16 15 13
18 18 C 1.38949 * 120.00230 * 179.97438 * 16 15 13
19 19 N 1.31416 * 119.99807 * 359.97438 * 18 16 15
20 20 Si 1.86803 * 120.00303 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46809 * 120.00147 * 20 18 16
23 23 H 1.48497 * 109.47378 * 239.99941 * 20 18 16
24 24 N 1.36757 * 108.20251 * 359.58268 * 8 7 6
25 25 H 0.97002 * 125.66299 * 180.27702 * 24 8 7
26 26 H 1.09001 * 109.46911 * 299.99319 * 1 2 3
27 27 H 1.08998 * 109.47347 * 59.99882 * 1 2 3
28 28 H 1.09000 * 109.46657 * 179.97438 * 1 2 3
29 29 H 1.08005 * 126.26765 * 0.03675 * 6 5 3
30 30 H 1.07998 * 126.26766 * 180.28159 * 7 6 5
31 31 H 1.09004 * 109.47122 * 299.99980 * 12 11 9
32 32 H 1.09000 * 109.47070 * 60.00006 * 12 11 9
33 33 H 0.97004 * 119.99472 * 359.97438 * 15 13 12
34 34 H 0.97002 * 120.00022 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0639 1.2012 0.0000
4 8 1.4020 2.2205 0.0005
5 6 3.5337 1.2784 -0.0006
6 6 4.2833 2.4372 -0.0001
7 6 5.6271 2.0661 0.0050
8 6 5.6758 0.6869 -0.0019
9 6 6.8978 -0.1334 -0.0030
10 8 7.9890 0.4017 -0.0031
11 8 6.8067 -1.4784 -0.0039
12 6 8.0530 -2.2236 -0.0044
13 6 7.7551 -3.7008 -0.0060
14 8 6.6054 -4.0876 -0.0071
15 7 8.7660 -4.5922 -0.0062
16 6 8.4950 -5.9360 -0.0082
17 1 7.4714 -6.2804 -0.0091
18 6 9.5372 -6.8550 -0.0089
19 7 10.7827 -6.4359 -0.0082
20 14 9.1679 -8.6861 -0.0109
21 1 7.6976 -8.8945 -0.0120
22 1 9.7566 -9.3084 -1.2239
23 1 9.7560 -9.3110 1.2011
24 7 4.3926 0.2141 -0.0016
25 1 4.1344 -0.7209 -0.0019
26 1 -0.3633 0.5137 0.8901
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 3.8992 3.4466 0.0012
30 1 6.4746 2.7354 0.0110
31 1 8.6285 -1.9684 -0.8943
32 1 8.6286 -1.9695 0.8857
33 1 9.6854 -4.2827 -0.0057
34 1 11.5103 -7.0774 -0.0084
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000796363700.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:01
Heat of formation + Delta-G solvation = -159.207946 kcal
Electronic energy + Delta-G solvation = -22389.813147 eV
Core-core repulsion = 18482.205260 eV
Total energy + Delta-G solvation = -3907.607887 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 296.093 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.87400 -40.45841 -39.81220 -38.16994 -36.80876 -36.25067 -34.07723 -31.60435
-31.45623 -30.74515 -28.64231 -27.87097 -25.10359 -24.23801 -22.36784 -20.94025
-20.25271 -19.67536 -19.31839 -18.14549 -17.87148 -17.20143 -16.83092 -16.49546
-16.42559 -15.74673 -14.79943 -14.76425 -14.46159 -14.23199 -14.00071 -13.96629
-13.37154 -13.35057 -13.12914 -12.98316 -12.51341 -12.40174 -12.17333 -11.68031
-11.20282 -11.20148 -11.17044 -10.78857 -10.57871 -10.43964 -10.35791 -9.68129
-9.49836 -8.83966 -8.61733 -8.15086 -6.56056 -3.98355 0.48152 1.61738
2.14329 2.38919 2.70705 2.74036 2.89493 3.07334 3.20265 3.27281
3.65740 4.05358 4.41446 4.49678 4.75421 4.81877 4.83319 4.84782
4.98228 5.08765 5.18923 5.39222 5.47645 5.59737 5.70905 5.87658
5.94594 6.11073 6.34823 6.37895 6.85440 7.30584 7.42245 7.62376
7.87688 8.40928 9.00665 9.32103 9.81208 10.61050
Molecular weight = 296.09amu
Principal moments of inertia in cm(-1)
A = 0.021008 B = 0.002899 C = 0.002552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1332.502663 B = 9655.732183 C =10967.787242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.359 6.359
3 C 0.537 3.463
4 O -0.492 6.492
5 C -0.001 4.001
6 C -0.112 4.112
7 C -0.119 4.119
8 C 0.023 3.977
9 C 0.528 3.472
10 O -0.491 6.491
11 O -0.328 6.328
12 C 0.063 3.937
13 C 0.437 3.563
14 O -0.578 6.578
15 N -0.550 5.550
16 C -0.303 4.303
17 H 0.107 0.893
18 C 0.026 3.974
19 N -0.895 5.895
20 Si 0.934 3.066
21 H -0.267 1.267
22 H -0.280 1.280
23 H -0.280 1.280
24 N -0.492 5.492
25 H 0.438 0.562
26 H 0.066 0.934
27 H 0.066 0.934
28 H 0.106 0.894
29 H 0.163 0.837
30 H 0.165 0.835
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.395 0.605
34 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.458 14.644 0.029 19.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.276 6.276
3 C 0.381 3.619
4 O -0.379 6.379
5 C -0.118 4.118
6 C -0.138 4.138
7 C -0.145 4.145
8 C -0.094 4.094
9 C 0.372 3.628
10 O -0.378 6.378
11 O -0.243 6.243
12 C -0.014 4.014
13 C 0.221 3.779
14 O -0.463 6.463
15 N -0.187 5.187
16 C -0.432 4.432
17 H 0.125 0.875
18 C -0.177 4.177
19 N -0.536 5.536
20 Si 0.760 3.240
21 H -0.191 1.191
22 H -0.206 1.206
23 H -0.206 1.206
24 N -0.089 5.089
25 H 0.279 0.721
26 H 0.085 0.915
27 H 0.085 0.915
28 H 0.124 0.876
29 H 0.181 0.819
30 H 0.182 0.818
31 H 0.109 0.891
32 H 0.109 0.891
33 H 0.229 0.771
34 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -13.001 14.476 0.028 19.457
hybrid contribution 0.388 -1.159 -0.002 1.222
sum -12.613 13.317 0.025 18.342
Atomic orbital electron populations
1.23348 0.75006 1.04259 1.02828 1.86588 1.24454 1.32225 1.84285
1.19907 0.86787 0.82004 0.73213 1.90894 1.65223 1.35849 1.45979
1.19521 0.86826 0.88423 1.17010 1.21286 0.91556 0.97306 1.03675
1.21310 0.97531 0.91419 1.04206 1.19673 0.82123 0.93173 1.14479
1.19945 0.87626 0.81504 0.73765 1.90897 1.27369 1.73724 1.45847
1.86582 1.36898 1.17605 1.83205 1.22831 0.83106 0.91537 1.03933
1.19269 0.86674 0.85665 0.86253 1.90558 1.20381 1.79783 1.55547
1.41703 1.07527 1.05970 1.63497 1.19775 0.95210 0.79995 1.48261
0.87527 1.25328 0.94584 1.01037 0.96762 1.69621 0.98581 1.35941
1.49428 0.85736 0.78958 0.81421 0.77864 1.19072 1.20570 1.20564
1.42114 1.04808 1.10015 1.51990 0.72064 0.91514 0.91521 0.87580
0.81931 0.81753 0.89119 0.89115 0.77088 0.91586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.27 10.57 101.05 1.07 1.34 16
2 O -0.36 -3.67 10.58 -40.80 -0.43 -4.10 16
3 C 0.54 6.08 7.95 34.36 0.27 6.35 16
4 O -0.49 -6.34 16.67 -19.29 -0.32 -6.66 16
5 C 0.00 -0.01 7.07 -82.12 -0.58 -0.59 16
6 C -0.11 -1.13 10.60 -39.23 -0.42 -1.54 16
7 C -0.12 -1.27 10.60 -39.23 -0.42 -1.69 16
8 C 0.02 0.30 7.07 -82.12 -0.58 -0.28 16
9 C 0.53 8.09 7.95 34.36 0.27 8.37 16
10 O -0.49 -8.17 16.67 -19.29 -0.32 -8.49 16
11 O -0.33 -5.73 9.77 -47.48 -0.46 -6.19 16
12 C 0.06 1.14 5.96 36.01 0.21 1.35 16
13 C 0.44 10.11 7.86 -10.99 -0.09 10.02 16
14 O -0.58 -15.42 16.08 -14.12 -0.23 -15.65 16
15 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16
16 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16
17 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16
18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16
19 N -0.90 -23.55 13.05 55.50 0.72 -22.83 16
20 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16
21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
23 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16
24 N -0.49 -5.72 6.11 -5.92 -0.04 -5.75 16
25 H 0.44 4.88 8.96 -40.82 -0.37 4.51 16
26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16
30 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16
31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
33 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16
34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16
LS Contribution 325.03 15.07 4.90 4.90
Total: -1.00 -32.57 325.03 -4.91 -37.48
By element:
Atomic # 1 Polarization: 13.16 SS G_CDS: -3.16 Total: 10.00 kcal
Atomic # 6 Polarization: 16.07 SS G_CDS: -0.49 Total: 15.58 kcal
Atomic # 7 Polarization: -42.75 SS G_CDS: 0.63 Total: -42.12 kcal
Atomic # 8 Polarization: -39.33 SS G_CDS: -1.77 Total: -41.09 kcal
Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -32.57 -4.91 -37.48 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000796363700.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.727 kcal
(2) G-P(sol) polarization free energy of solvation -32.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds