Wall clock time and date at job start Tue Mar 31 2020 03:52:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34811 * 116.99457 * 2 1
4 4 O 1.21531 * 120.00572 * 0.02562 * 3 2 1
5 5 C 1.47179 * 120.00027 * 180.02562 * 3 2 1
6 6 C 1.38009 * 125.90491 * 180.02562 * 5 3 2
7 7 C 1.39404 * 107.46351 * 179.74265 * 6 5 3
8 8 C 1.38010 * 107.45783 * 0.41523 * 7 6 5
9 9 C 1.47183 * 125.89755 * 179.84016 * 8 7 6
10 10 O 1.21535 * 120.00058 * 359.69822 * 9 8 7
11 11 O 1.34809 * 120.00018 * 179.69497 * 9 8 7
12 12 C 1.45206 * 116.99930 * 180.02562 * 11 9 8
13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 9
14 14 O 1.21297 * 119.99980 * 0.02562 * 13 12 11
15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11
16 16 C 1.37088 * 120.00081 * 180.02562 * 15 13 12
17 17 H 1.08003 * 119.99914 * 359.97438 * 16 15 13
18 18 C 1.38949 * 120.00230 * 179.97438 * 16 15 13
19 19 N 1.31416 * 119.99807 * 359.97438 * 18 16 15
20 20 Si 1.86803 * 120.00303 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46809 * 120.00147 * 20 18 16
23 23 H 1.48497 * 109.47378 * 239.99941 * 20 18 16
24 24 N 1.36757 * 108.20251 * 359.58268 * 8 7 6
25 25 H 0.97002 * 125.66299 * 180.27702 * 24 8 7
26 26 H 1.09001 * 109.46911 * 299.99319 * 1 2 3
27 27 H 1.08998 * 109.47347 * 59.99882 * 1 2 3
28 28 H 1.09000 * 109.46657 * 179.97438 * 1 2 3
29 29 H 1.08005 * 126.26765 * 0.03675 * 6 5 3
30 30 H 1.07998 * 126.26766 * 180.28159 * 7 6 5
31 31 H 1.09004 * 109.47122 * 299.99980 * 12 11 9
32 32 H 1.09000 * 109.47070 * 60.00006 * 12 11 9
33 33 H 0.97004 * 119.99472 * 359.97438 * 15 13 12
34 34 H 0.97002 * 120.00022 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0639 1.2012 0.0000
4 8 1.4020 2.2205 0.0005
5 6 3.5337 1.2784 -0.0006
6 6 4.2833 2.4372 -0.0001
7 6 5.6271 2.0661 0.0050
8 6 5.6758 0.6869 -0.0019
9 6 6.8978 -0.1334 -0.0030
10 8 7.9890 0.4017 -0.0031
11 8 6.8067 -1.4784 -0.0039
12 6 8.0530 -2.2236 -0.0044
13 6 7.7551 -3.7008 -0.0060
14 8 6.6054 -4.0876 -0.0071
15 7 8.7660 -4.5922 -0.0062
16 6 8.4950 -5.9360 -0.0082
17 1 7.4714 -6.2804 -0.0091
18 6 9.5372 -6.8550 -0.0089
19 7 10.7827 -6.4359 -0.0082
20 14 9.1679 -8.6861 -0.0109
21 1 7.6976 -8.8945 -0.0120
22 1 9.7566 -9.3084 -1.2239
23 1 9.7560 -9.3110 1.2011
24 7 4.3926 0.2141 -0.0016
25 1 4.1344 -0.7209 -0.0019
26 1 -0.3633 0.5137 0.8901
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 3.8992 3.4466 0.0012
30 1 6.4746 2.7354 0.0110
31 1 8.6285 -1.9684 -0.8943
32 1 8.6286 -1.9695 0.8857
33 1 9.6854 -4.2827 -0.0057
34 1 11.5103 -7.0774 -0.0084
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000796363700.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:52:01
Heat of formation + Delta-G solvation = -180.911677 kcal
Electronic energy + Delta-G solvation = -22390.754291 eV
Core-core repulsion = 18482.205260 eV
Total energy + Delta-G solvation = -3908.549031 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 296.093 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.79453 -41.53305 -40.88974 -39.96237 -37.65446 -37.60347 -36.05106 -33.43684
-32.45839 -31.72627 -30.05084 -28.66020 -26.76738 -25.45664 -23.34324 -21.85583
-21.46921 -21.16075 -20.33740 -20.09122 -18.92152 -18.21110 -17.88149 -17.80201
-17.56588 -17.34846 -16.54106 -15.99115 -15.82297 -15.43442 -15.26286 -15.01856
-14.73160 -14.24987 -14.01040 -13.94271 -13.88930 -13.74071 -13.57212 -13.11522
-12.95659 -12.47801 -12.16768 -12.11191 -11.96208 -11.92260 -11.91298 -11.59800
-10.54256 -10.33821 -10.13065 -9.76092 -8.53778 -6.04278 -0.47809 0.67147
1.11917 1.33804 1.39508 1.43996 1.57665 1.78499 1.81863 1.85360
1.91037 2.28449 2.98933 3.12135 3.54980 3.61587 3.93827 4.00918
4.09360 4.14134 4.20536 4.23938 4.31555 4.60556 4.68958 4.95418
5.06282 5.09811 5.24792 5.36311 5.54575 5.87479 5.94780 6.38373
6.46459 6.49774 7.01668 7.38352 7.91311 8.63365
Molecular weight = 296.09amu
Principal moments of inertia in cm(-1)
A = 0.021008 B = 0.002899 C = 0.002552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1332.502663 B = 9655.732183 C =10967.787242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.367 6.367
3 C 0.540 3.460
4 O -0.510 6.510
5 C -0.003 4.003
6 C -0.106 4.106
7 C -0.103 4.103
8 C -0.001 4.001
9 C 0.534 3.466
10 O -0.506 6.506
11 O -0.344 6.344
12 C 0.073 3.927
13 C 0.436 3.564
14 O -0.618 6.618
15 N -0.557 5.557
16 C -0.337 4.337
17 H 0.085 0.915
18 C -0.008 4.008
19 N -0.915 5.915
20 Si 0.997 3.003
21 H -0.271 1.271
22 H -0.270 1.270
23 H -0.270 1.270
24 N -0.494 5.494
25 H 0.438 0.562
26 H 0.071 0.929
27 H 0.070 0.930
28 H 0.129 0.871
29 H 0.186 0.814
30 H 0.184 0.816
31 H 0.112 0.888
32 H 0.113 0.887
33 H 0.401 0.599
34 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.640 15.306 0.032 19.850
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.284 6.284
3 C 0.385 3.615
4 O -0.398 6.398
5 C -0.119 4.119
6 C -0.132 4.132
7 C -0.129 4.129
8 C -0.118 4.118
9 C 0.378 3.622
10 O -0.395 6.395
11 O -0.259 6.259
12 C -0.004 4.004
13 C 0.223 3.777
14 O -0.505 6.505
15 N -0.194 5.194
16 C -0.466 4.466
17 H 0.103 0.897
18 C -0.209 4.209
19 N -0.555 5.555
20 Si 0.820 3.180
21 H -0.195 1.195
22 H -0.195 1.195
23 H -0.195 1.195
24 N -0.091 5.091
25 H 0.278 0.722
26 H 0.089 0.911
27 H 0.089 0.911
28 H 0.147 0.853
29 H 0.203 0.797
30 H 0.201 0.799
31 H 0.130 0.870
32 H 0.130 0.870
33 H 0.235 0.765
34 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -13.162 15.150 0.031 20.069
hybrid contribution 0.349 -1.296 -0.003 1.342
sum -12.813 13.854 0.028 18.871
Atomic orbital electron populations
1.23656 0.73252 1.06022 1.03296 1.86586 1.26257 1.31661 1.83850
1.19922 0.86821 0.82072 0.72732 1.90882 1.65587 1.36400 1.46978
1.19747 0.86948 0.88701 1.16551 1.21602 0.91019 0.97989 1.02556
1.21609 0.98444 0.90586 1.02220 1.19562 0.81587 0.93557 1.17045
1.20219 0.88405 0.80553 0.72988 1.90882 1.28108 1.73602 1.46879
1.86574 1.36582 1.18987 1.83768 1.22615 0.83711 0.88026 1.06000
1.20074 0.85716 0.87713 0.84212 1.90525 1.21971 1.81133 1.56879
1.41734 1.08100 1.05677 1.63874 1.19748 0.94700 0.81588 1.50593
0.89732 1.26113 0.94223 1.04906 0.95651 1.69674 0.99162 1.37476
1.49141 0.84813 0.78477 0.76287 0.78420 1.19526 1.19507 1.19495
1.42101 1.04607 1.10184 1.52228 0.72161 0.91067 0.91075 0.85258
0.79658 0.79886 0.86966 0.86954 0.76477 0.90942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.57 113.37 1.20 1.58 16
2 O -0.37 -7.17 10.58 -57.23 -0.61 -7.78 16
3 C 0.54 11.65 7.95 70.17 0.56 12.21 16
4 O -0.51 -12.50 16.67 19.73 0.33 -12.17 16
5 C 0.00 -0.06 7.07 40.67 0.29 0.23 16
6 C -0.11 -1.89 10.60 22.50 0.24 -1.65 16
7 C -0.10 -1.98 10.60 22.50 0.24 -1.74 16
8 C 0.00 -0.02 7.07 40.67 0.29 0.27 16
9 C 0.53 15.88 7.95 70.17 0.56 16.43 16
10 O -0.51 -16.18 16.67 19.72 0.33 -15.85 16
11 O -0.34 -11.88 9.77 -50.82 -0.50 -12.38 16
12 C 0.07 2.59 5.96 71.24 0.42 3.02 16
13 C 0.44 20.43 7.86 87.66 0.69 21.12 16
14 O -0.62 -33.78 16.08 15.72 0.25 -33.52 16
15 N -0.56 -27.65 5.29 -306.98 -1.62 -29.28 16
16 C -0.34 -18.50 9.68 84.04 0.81 -17.68 16
17 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16
18 C -0.01 -0.42 5.50 84.93 0.47 0.05 16
19 N -0.91 -47.66 13.05 21.66 0.28 -47.37 16
20 Si 1.00 41.23 29.55 68.60 2.03 43.26 16
21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16
22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16
23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16
24 N -0.49 -11.13 6.11 -172.64 -1.05 -12.18 16
25 H 0.44 9.74 8.96 -92.71 -0.83 8.91 16
26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
28 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16
30 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16
31 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16
32 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16
33 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16
34 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16
Total: -1.00 -69.45 325.03 4.82 -64.62
By element:
Atomic # 1 Polarization: 29.19 SS G_CDS: -0.38 Total: 28.81 kcal
Atomic # 6 Polarization: 28.08 SS G_CDS: 5.76 Total: 33.84 kcal
Atomic # 7 Polarization: -86.44 SS G_CDS: -2.39 Total: -88.83 kcal
Atomic # 8 Polarization: -81.51 SS G_CDS: -0.19 Total: -81.70 kcal
Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal
Total: -69.45 4.82 -64.62 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000796363700.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -116.288 kcal
(2) G-P(sol) polarization free energy of solvation -69.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -180.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds