Wall clock time and date at job start Tue Mar 31 2020 04:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99401 * 2 1 4 4 O 1.20823 * 120.00411 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99578 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47214 * 179.97438 * 5 3 2 7 7 C 1.36795 * 120.00628 * 270.00622 * 6 5 3 8 8 H 1.08001 * 119.99537 * 19.10968 * 7 6 5 9 9 C 1.39095 * 120.00499 * 199.11723 * 7 6 5 10 10 N 1.31324 * 119.99851 * 15.87702 * 9 7 6 11 11 Si 1.86799 * 120.00181 * 195.87569 * 9 7 6 12 12 H 1.48498 * 109.47209 * 64.99893 * 11 9 7 13 13 H 1.48510 * 109.47068 * 184.99993 * 11 9 7 14 14 H 1.48503 * 109.47296 * 304.99544 * 11 9 7 15 15 C 1.34780 * 119.99773 * 90.00296 * 6 5 3 16 16 O 1.21567 * 119.99875 * 242.76997 * 15 6 5 17 17 C 1.47997 * 120.00168 * 62.76892 * 15 6 5 18 18 C 1.39827 * 120.91116 * 20.38181 * 17 15 6 19 19 C 1.38437 * 118.95927 * 180.29378 * 18 17 15 20 20 F 1.35104 * 119.57704 * 179.74802 * 19 18 17 21 21 N 1.32009 * 120.84133 * 359.72661 * 19 18 17 22 22 C 1.31878 * 122.02965 * 0.02562 * 21 19 18 23 23 C 1.38041 * 120.94259 * 359.97438 * 22 21 19 24 24 C 1.50693 * 120.47208 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47099 * 60.00344 * 1 2 3 26 26 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47344 * 299.99788 * 1 2 3 28 28 H 1.09006 * 109.46738 * 60.00380 * 5 3 2 29 29 H 1.08998 * 109.47518 * 300.00263 * 5 3 2 30 30 H 0.97007 * 120.00204 * 184.95937 * 10 9 7 31 31 H 1.07996 * 120.51676 * 0.02636 * 18 17 15 32 32 H 1.08005 * 119.52962 * 179.97438 * 22 21 19 33 33 H 1.09004 * 109.47629 * 95.57484 * 24 23 22 34 34 H 1.09002 * 109.47630 * 335.56778 * 24 23 22 35 35 H 1.09010 * 109.46874 * 215.57339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1759 3.3352 -1.1851 8 1 3.7421 2.9464 -2.0946 9 6 4.9323 4.5020 -1.2188 10 7 5.7103 4.8096 -0.2065 11 14 4.8415 5.6315 -2.7038 12 1 3.4735 6.1993 -2.8110 13 1 5.8243 6.7339 -2.5482 14 1 5.1545 4.8592 -3.9330 15 6 4.1722 3.3268 1.1668 16 8 3.4788 4.2839 1.4514 17 6 5.2256 2.8720 2.1016 18 6 6.2900 2.0827 1.6553 19 6 7.2498 1.6748 2.5658 20 9 8.2808 0.9075 2.1491 21 7 7.1706 2.0263 3.8357 22 6 6.1855 2.7735 4.2945 23 6 5.1862 3.2240 3.4555 24 6 4.0659 4.0778 3.9910 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9563 0.7808 -0.8892 29 1 3.9557 0.7811 0.8908 30 1 6.1822 5.6571 -0.1974 31 1 6.3599 1.7922 0.6175 32 1 6.1603 3.0368 5.3417 33 1 4.3018 5.1297 3.8300 34 1 3.9453 3.8917 5.0582 35 1 3.1400 3.8295 3.4720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889077061.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:53 Heat of formation + Delta-G solvation = -116.584109 kcal Electronic energy + Delta-G solvation = -24551.981290 eV Core-core repulsion = 20658.594501 eV Total energy + Delta-G solvation = -3893.386789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.98478 -41.76143 -41.17060 -39.76235 -37.48223 -36.47458 -34.30349 -33.88165 -32.90955 -30.05224 -28.24160 -27.83592 -26.90779 -25.24732 -23.34125 -22.48390 -21.49210 -19.67954 -18.73754 -18.45549 -18.23239 -17.48321 -17.37884 -17.10456 -16.98239 -16.33602 -16.16153 -15.92898 -15.64270 -15.00312 -14.83435 -14.65536 -14.44881 -14.37147 -13.76949 -13.47356 -13.33475 -13.24641 -12.98474 -12.88606 -12.84611 -12.73961 -12.58413 -12.13445 -11.73469 -11.72936 -11.15636 -11.06231 -10.76084 -10.38755 -9.75598 -9.56705 -8.32948 -5.76806 -0.28193 -0.04117 1.28240 1.37195 1.45339 1.49030 1.63206 1.93426 2.36244 2.52024 2.72439 2.88411 3.17814 3.58720 3.82024 3.86353 3.89405 4.08983 4.23160 4.34268 4.36038 4.39800 4.49326 4.66189 4.71419 4.76067 4.81368 4.86104 5.12429 5.37517 5.40684 5.42392 5.63521 5.94347 6.58121 6.82273 6.87039 7.13341 7.41217 7.79609 8.78883 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.007786 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.669898 B = 3595.265062 C = 4902.480286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.430 3.570 4 O -0.530 6.530 5 C 0.136 3.864 6 N -0.539 5.539 7 C -0.300 4.300 8 H 0.089 0.911 9 C -0.015 4.015 10 N -0.902 5.902 11 Si 0.974 3.026 12 H -0.292 1.292 13 H -0.288 1.288 14 H -0.256 1.256 15 C 0.616 3.384 16 O -0.531 6.531 17 C -0.050 4.050 18 C -0.127 4.127 19 C 0.276 3.724 20 F -0.117 7.117 21 N -0.514 5.514 22 C 0.135 3.865 23 C -0.116 4.116 24 C -0.095 4.095 25 H 0.053 0.947 26 H 0.139 0.861 27 H 0.053 0.947 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.265 0.735 31 H 0.148 0.852 32 H 0.211 0.789 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 -9.836 5.589 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.271 3.729 4 O -0.417 6.417 5 C 0.009 3.991 6 N -0.267 5.267 7 C -0.426 4.426 8 H 0.107 0.893 9 C -0.215 4.215 10 N -0.544 5.544 11 Si 0.800 3.200 12 H -0.218 1.218 13 H -0.214 1.214 14 H -0.180 1.180 15 C 0.409 3.591 16 O -0.407 6.407 17 C -0.062 4.062 18 C -0.149 4.149 19 C 0.124 3.876 20 F -0.096 7.096 21 N -0.229 5.229 22 C -0.022 4.022 23 C -0.119 4.119 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.157 0.843 27 H 0.072 0.928 28 H 0.157 0.843 29 H 0.137 0.863 30 H 0.076 0.924 31 H 0.166 0.834 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.110 -9.222 6.265 11.347 hybrid contribution -0.658 1.286 -1.734 2.257 sum -2.768 -7.936 4.530 9.548 Atomic orbital electron populations 1.23478 0.75617 1.05556 1.01836 1.86510 1.24453 1.32661 1.84145 1.25705 0.94221 0.81266 0.71708 1.90691 1.67649 1.37890 1.45506 1.20834 0.85749 0.85125 1.07355 1.42328 1.71168 1.08964 1.04229 1.19419 1.27642 1.09573 0.86015 0.89337 1.25744 0.94367 1.00353 1.01056 1.69421 1.27888 1.22782 1.34335 0.85252 0.76802 0.78488 0.79444 1.21839 1.21352 1.18020 1.17677 0.80484 0.81244 0.79715 1.90507 1.45610 1.30548 1.73990 1.20646 0.96182 0.95233 0.94127 1.21862 0.93659 0.98255 1.01100 1.17966 0.86178 0.93929 0.89556 1.91579 1.56443 1.72300 1.89293 1.66888 1.26558 1.14904 1.14591 1.22867 0.86486 0.91549 1.01319 1.21416 0.99351 0.98567 0.92576 1.20689 0.94697 0.98033 1.01763 0.92784 0.84329 0.92845 0.84329 0.86325 0.92449 0.83449 0.77237 0.91668 0.87641 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -10.72 10.57 -51.46 -0.54 -11.27 16 3 C 0.43 16.16 8.02 71.24 0.57 16.73 16 4 O -0.53 -24.98 16.18 21.97 0.36 -24.62 16 5 C 0.14 4.86 5.92 85.64 0.51 5.37 16 6 N -0.54 -25.33 1.53 -642.73 -0.98 -26.32 16 7 C -0.30 -15.42 9.61 84.12 0.81 -14.61 16 8 H 0.09 4.37 7.88 -2.91 -0.02 4.35 16 9 C -0.02 -0.81 5.12 84.97 0.44 -0.38 16 10 N -0.90 -49.65 11.11 21.69 0.24 -49.41 16 11 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 C 0.62 30.17 3.69 86.83 0.32 30.49 16 16 O -0.53 -29.74 14.48 -3.93 -0.06 -29.80 16 17 C -0.05 -2.07 5.22 -19.89 -0.10 -2.17 16 18 C -0.13 -4.87 9.02 22.70 0.20 -4.67 16 19 C 0.28 9.80 8.40 84.71 0.71 10.52 16 20 F -0.12 -3.99 17.29 44.97 0.78 -3.22 16 21 N -0.51 -17.06 10.35 -197.11 -2.04 -19.10 16 22 C 0.13 3.88 10.83 84.64 0.92 4.80 16 23 C -0.12 -4.03 5.93 -19.50 -0.12 -4.14 16 24 C -0.09 -3.03 8.74 71.23 0.62 -2.41 16 25 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 26 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.14 4.15 8.04 -2.38 -0.02 4.13 16 29 H 0.12 3.59 7.31 -2.39 -0.02 3.57 16 30 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 31 H 0.15 5.78 7.80 -2.91 -0.02 5.76 16 32 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.11 2.28 8.06 -2.39 -0.02 2.26 16 35 H 0.05 2.03 6.34 -2.38 -0.02 2.02 16 Total: -1.00 -72.09 317.82 6.99 -65.10 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.13 Total: 11.38 kcal Atomic # 6 Polarization: 35.31 SS G_CDS: 6.08 Total: 41.39 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -2.78 Total: -94.83 kcal Atomic # 8 Polarization: -65.45 SS G_CDS: -0.25 Total: -65.69 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.09 6.99 -65.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889077061.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.483 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds