Wall clock time and date at job start Tue Mar 31 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47408 * 270.00411 * 3 2 1 5 5 H 1.48503 * 109.47518 * 30.00251 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00133 * 3 2 1 7 7 C 1.38811 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99790 * 193.69145 * 7 2 1 9 9 N 1.36939 * 120.00073 * 13.69465 * 7 2 1 10 10 C 1.46920 * 120.63367 * 31.22441 * 9 7 2 11 11 C 1.53195 * 108.77635 * 126.36928 * 10 9 7 12 12 C 1.53038 * 109.30734 * 54.63923 * 11 10 9 13 13 C 1.53041 * 109.53765 * 298.62974 * 12 11 10 14 14 C 1.46931 * 120.62766 * 211.20557 * 9 7 2 15 15 H 1.08998 * 109.58392 * 113.70175 * 14 9 7 16 16 C 1.52999 * 109.58881 * 353.41823 * 14 9 7 17 17 N 1.46503 * 109.47449 * 60.19615 * 16 14 9 18 18 C 1.34767 * 120.00106 * 180.02562 * 17 16 14 19 19 O 1.21619 * 120.00159 * 0.02562 * 18 17 16 20 20 C 1.47170 * 120.00046 * 179.97438 * 18 17 16 21 21 C 1.38249 * 128.47808 * 180.02562 * 20 18 17 22 22 N 1.31237 * 111.88718 * 180.02562 * 21 20 18 23 23 N 1.27334 * 120.04193 * 0.02562 * 22 21 20 24 24 S 1.56630 * 109.74172 * 359.69275 * 23 22 21 25 25 H 0.96997 * 120.00176 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.59322 * 246.16141 * 10 9 7 27 27 H 1.09005 * 109.58483 * 6.43968 * 10 9 7 28 28 H 1.08996 * 109.49613 * 174.58558 * 11 10 9 29 29 H 1.08997 * 109.49439 * 294.68553 * 11 10 9 30 30 H 1.09000 * 109.46197 * 58.65714 * 12 11 10 31 31 H 1.09005 * 109.45868 * 178.62789 * 12 11 10 32 32 H 1.08996 * 109.50182 * 301.41507 * 13 12 11 33 33 H 1.09002 * 109.49550 * 181.31549 * 13 12 11 34 34 H 1.09003 * 109.46819 * 300.20146 * 16 14 9 35 35 H 1.08992 * 109.47106 * 180.20147 * 16 14 9 36 36 H 0.97002 * 119.99515 * 359.97438 * 17 16 14 37 37 H 1.07995 * 124.05721 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0673 -1.2155 0.2208 9 7 1.3548 -2.3711 -0.2818 10 6 0.2079 -2.3840 -1.2000 11 6 0.4637 -3.4255 -2.2939 12 6 0.7640 -4.7783 -1.6443 13 6 2.0235 -4.6638 -0.7824 14 6 1.7853 -3.6363 0.3286 15 1 1.0103 -3.9985 1.0041 16 6 3.0827 -3.4142 1.1085 17 7 2.8553 -2.4223 2.1624 18 6 3.8647 -2.0654 2.9810 19 8 4.9644 -2.5664 2.8446 20 6 3.6364 -1.0684 4.0393 21 6 4.5360 -0.5777 4.9673 22 7 3.9831 0.3057 5.7649 23 7 2.7548 0.6109 5.6244 24 16 2.1416 -0.1986 4.4319 25 1 -0.4850 0.8400 0.0004 26 1 -0.6968 -2.6453 -0.6511 27 1 0.0898 -1.3987 -1.6510 28 1 -0.4199 -3.5137 -2.9260 29 1 1.3154 -3.1155 -2.8993 30 1 -0.0780 -5.0760 -1.0194 31 1 0.9225 -5.5267 -2.4208 32 1 2.8605 -4.3422 -1.4021 33 1 2.2500 -5.6333 -0.3388 34 1 3.8567 -3.0535 0.4310 35 1 3.4022 -4.3546 1.5575 36 1 1.9784 -2.0218 2.2704 37 1 5.5694 -0.8851 5.0290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024348148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:35 Heat of formation + Delta-G solvation = 39.576196 kcal Electronic energy + Delta-G solvation = -22369.241361 eV Core-core repulsion = 19081.132119 eV Total energy + Delta-G solvation = -3288.109243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89745 -40.71851 -39.25581 -35.81471 -34.88727 -33.35061 -32.27241 -31.64539 -28.93911 -27.54398 -26.41565 -23.97232 -23.63948 -22.20321 -21.59993 -20.71649 -20.21391 -18.84028 -17.90453 -17.38893 -17.08936 -16.88417 -16.08402 -15.83749 -15.67287 -15.32459 -15.10646 -14.82107 -14.53382 -14.04272 -13.82592 -13.62913 -13.45515 -12.99771 -12.88222 -12.81070 -12.55926 -12.30865 -12.04143 -11.76638 -11.50068 -11.46137 -11.26693 -11.18568 -11.06682 -10.96362 -10.92691 -10.51784 -9.96665 -8.54033 -7.82714 -5.28772 -1.35550 -0.22956 0.41209 0.88029 1.35724 1.45292 1.45896 1.88800 2.10426 2.46344 2.96538 3.32169 3.59330 3.64476 3.76701 4.00759 4.26770 4.30792 4.47017 4.56678 4.58279 4.68745 4.77352 4.91329 5.04369 5.18399 5.27368 5.31643 5.34762 5.50100 5.52512 5.67577 5.77058 5.88701 6.41125 6.46252 6.55258 7.03607 7.20931 7.90068 8.43709 9.21200 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.006455 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.557417 B = 4336.467988 C = 5384.402762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.020 4.020 3 Si 0.912 3.088 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.157 3.843 15 H 0.038 0.962 16 C 0.136 3.864 17 N -0.683 5.683 18 C 0.595 3.405 19 O -0.562 6.562 20 C -0.293 4.293 21 C 0.074 3.926 22 N -0.270 5.270 23 N -0.287 5.287 24 S 0.470 5.530 25 H 0.250 0.750 26 H 0.004 0.996 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.412 0.588 37 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 -7.695 3.416 8.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.218 4.218 3 Si 0.743 3.257 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.080 0.920 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.051 3.949 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.333 5.333 18 C 0.379 3.621 19 O -0.443 6.443 20 C -0.434 4.434 21 C -0.094 4.094 22 N -0.134 5.134 23 N -0.268 5.268 24 S 0.605 5.395 25 H 0.059 0.941 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.239 -6.747 4.114 7.999 hybrid contribution 1.095 0.960 -0.590 1.571 sum 2.334 -5.787 3.524 7.167 Atomic orbital electron populations 1.70061 1.05608 1.25333 1.55084 1.25319 0.95414 0.99173 1.01866 0.86121 0.78696 0.83219 0.77680 1.21925 1.21701 1.20504 1.19211 0.91563 0.84850 1.41220 0.91959 1.44239 1.35445 1.02767 1.50075 1.20586 0.87942 0.96934 0.89345 1.22052 1.00332 0.96762 0.98361 1.21345 0.97497 0.96356 0.98861 1.21888 0.98181 0.98703 0.97312 1.20943 0.93108 0.87619 0.93195 0.94392 1.21451 0.98069 0.90898 0.88290 1.45999 1.13379 1.42586 1.31344 1.16560 0.84671 0.80569 0.80335 1.90768 1.24359 1.56356 1.72806 1.28102 1.00152 1.08793 1.06380 1.24790 1.03598 0.91797 0.89166 1.70711 1.02041 1.15473 1.25142 1.78666 1.07351 1.23497 1.17272 1.83071 1.15144 1.21926 1.19383 0.94054 0.97790 0.93246 0.92011 0.93705 0.92347 0.90960 0.92675 0.89740 0.92665 0.89577 0.75036 0.74553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.33 11.22 21.65 0.24 -47.09 16 2 C -0.02 -0.99 4.97 84.86 0.42 -0.57 16 3 Si 0.91 41.61 29.57 68.60 2.03 43.64 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.24 -11.04 6.96 84.03 0.59 -10.46 16 8 H 0.06 2.98 5.86 -2.91 -0.02 2.96 16 9 N -0.60 -25.07 2.97 -675.23 -2.01 -27.07 16 10 C 0.18 7.45 5.27 86.36 0.46 7.91 16 11 C -0.14 -4.49 6.08 30.67 0.19 -4.30 16 12 C -0.10 -2.78 5.88 30.62 0.18 -2.60 16 13 C -0.12 -3.33 5.37 30.67 0.16 -3.17 16 14 C 0.16 5.24 3.01 44.97 0.14 5.38 16 15 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 16 C 0.14 4.43 4.43 86.38 0.38 4.82 16 17 N -0.68 -23.47 3.84 -466.65 -1.79 -25.26 16 18 C 0.60 20.50 7.80 86.59 0.68 21.18 16 19 O -0.56 -21.45 16.98 -4.09 -0.07 -21.52 16 20 C -0.29 -9.06 6.82 24.62 0.17 -8.89 16 21 C 0.07 2.06 11.55 84.78 0.98 3.04 16 22 N -0.27 -8.28 11.54 -57.87 -0.67 -8.94 16 23 N -0.29 -9.03 12.51 37.02 0.46 -8.57 16 24 S 0.47 13.99 23.05 -56.49 -1.30 12.68 16 25 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.05 2.42 6.19 -2.38 -0.01 2.41 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 2.00 7.42 -2.39 -0.02 1.99 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.41 14.77 6.82 -92.71 -0.63 14.14 16 37 H 0.24 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -56.62 317.09 1.70 -54.92 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.47 Total: 14.88 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 4.33 Total: 12.34 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.76 Total: -116.94 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 13.99 SS G_CDS: -1.30 Total: 12.68 kcal Total: -56.62 1.70 -54.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024348148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.496 kcal (2) G-P(sol) polarization free energy of solvation -56.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds