Wall clock time and date at job start Tue Mar 31 2020 05:02:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31241 * 124.05855 * 2 1
4 4 N 1.27332 * 120.04210 * 180.26171 * 3 2 1
5 5 S 1.56641 * 109.73857 * 0.02562 * 4 3 2
6 6 C 1.38248 * 124.05239 * 180.29092 * 2 1 3
7 7 C 1.47166 * 128.47723 * 359.75563 * 6 2 1
8 8 O 1.21626 * 120.00296 * 0.02562 * 7 6 2
9 9 N 1.34776 * 120.00012 * 179.97438 * 7 6 2
10 10 C 1.46507 * 119.99976 * 180.02562 * 9 7 6
11 11 C 1.53002 * 109.47050 * 185.13334 * 10 9 7
12 12 H 1.08998 * 109.87031 * 303.57726 * 11 10 9
13 13 C 1.54327 * 109.87993 * 64.59315 * 11 10 9
14 14 C 1.55154 * 102.94068 * 141.61133 * 13 11 10
15 15 C 1.54906 * 101.58049 * 324.49303 * 14 13 11
16 16 N 1.47013 * 109.87867 * 182.39843 * 11 10 9
17 17 C 1.36942 * 125.65119 * 61.62828 * 16 11 10
18 18 H 1.07994 * 119.99716 * 14.74845 * 17 16 11
19 19 C 1.38815 * 119.99772 * 194.75757 * 17 16 11
20 20 N 1.31617 * 120.00323 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99555 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.47544 * 60.00007 * 21 19 17
23 23 H 1.48501 * 109.47111 * 179.97438 * 21 19 17
24 24 H 1.48497 * 109.47168 * 299.99723 * 21 19 17
25 25 H 1.09003 * 109.47550 * 269.70911 * 1 2 3
26 26 H 1.09003 * 109.47116 * 29.70594 * 1 2 3
27 27 H 1.08997 * 109.47245 * 149.70714 * 1 2 3
28 28 H 0.96995 * 120.00127 * 359.97438 * 9 7 6
29 29 H 1.08997 * 109.47064 * 305.13867 * 10 9 7
30 30 H 1.09001 * 109.46929 * 65.13814 * 10 9 7
31 31 H 1.09001 * 110.71537 * 259.97481 * 13 11 10
32 32 H 1.08997 * 110.71950 * 23.24042 * 13 11 10
33 33 H 1.08987 * 111.00747 * 82.57121 * 14 13 11
34 34 H 1.09000 * 111.00189 * 206.42279 * 14 13 11
35 35 H 1.09004 * 110.36543 * 155.84985 * 15 14 13
36 36 H 1.09002 * 110.36901 * 278.06533 * 15 14 13
37 37 H 0.96999 * 119.99906 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2420 1.0873 0.0000
4 7 3.5122 0.9981 -0.0050
5 16 3.9366 -0.5097 -0.0112
6 6 2.2811 -1.1454 -0.0058
7 6 1.8393 -2.5492 -0.0080
8 8 0.6520 -2.8131 -0.0050
9 7 2.7503 -3.5424 -0.0144
10 6 2.3105 -4.9398 -0.0172
11 6 3.5283 -5.8580 0.1046
12 1 4.2331 -5.6473 -0.6998
13 6 4.2124 -5.6440 1.4713
14 6 4.6379 -7.0802 1.8756
15 6 3.4651 -7.9218 1.3136
16 7 3.1024 -7.2639 0.0451
17 6 2.4727 -7.8630 -1.0132
18 1 2.4600 -7.3788 -1.9784
19 6 1.8507 -9.0925 -0.8451
20 7 1.8665 -9.6827 0.3312
21 14 0.9912 -9.9094 -2.2885
22 1 1.9720 -10.1494 -3.3774
23 1 0.4114 -11.2046 -1.8509
24 1 -0.0926 -9.0239 -2.7848
25 1 -0.3634 -0.0052 1.0276
26 1 -0.3633 0.8926 -0.5093
27 1 -0.3633 -0.8873 -0.5184
28 1 3.6972 -3.3319 -0.0180
29 1 1.6403 -5.1115 0.8251
30 1 1.7859 -5.1538 -0.9484
31 1 5.0842 -4.9978 1.3691
32 1 3.5085 -5.2322 2.1945
33 1 5.5795 -7.3567 1.4016
34 1 4.7044 -7.1775 2.9592
35 1 3.7874 -8.9469 1.1306
36 1 2.6224 -7.9074 2.0048
37 1 1.4322 -10.5421 0.4485
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027747936.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:02:48
Heat of formation + Delta-G solvation = 56.972051 kcal
Electronic energy + Delta-G solvation = -21389.333937 eV
Core-core repulsion = 18101.979035 eV
Total energy + Delta-G solvation = -3287.354902 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.15458 -39.51855 -37.70718 -34.53323 -33.45011 -32.56176 -30.07173 -29.27473
-28.01137 -27.12426 -25.02180 -24.10610 -22.27198 -20.62057 -20.21024 -19.56495
-18.66892 -17.64405 -16.66755 -16.30220 -15.91696 -15.14857 -14.88846 -14.61977
-14.29317 -13.95888 -13.64875 -13.25975 -13.24954 -13.09920 -12.62215 -12.17456
-11.96481 -11.86117 -11.74608 -11.42221 -11.00781 -10.82703 -10.53887 -10.36193
-10.21714 -10.13180 -10.05457 -9.97090 -9.92291 -9.87648 -9.76227 -8.90481
-8.64824 -6.91979 -5.83249 -3.20665 -0.47289 0.59342 1.24226 1.73975
2.94733 3.02338 3.36925 3.41999 3.42346 3.67601 4.36882 4.42165
4.64521 5.09699 5.23959 5.30430 5.41053 5.41483 5.53235 5.53887
5.72117 5.93281 5.96989 6.02530 6.14987 6.36490 6.38687 6.44980
6.59087 6.67676 6.93097 7.35755 7.44354 7.48478 7.54783 7.72736
8.07828 8.18972 9.10365 9.70922 10.37603 11.28518
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.021764 B = 0.003765 C = 0.003403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1286.223688 B = 7434.294825 C = 8225.678980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.097 3.903
3 N -0.251 5.251
4 N -0.257 5.257
5 S 0.410 5.590
6 C -0.283 4.283
7 C 0.594 3.406
8 O -0.514 6.514
9 N -0.711 5.711
10 C 0.108 3.892
11 C 0.151 3.849
12 H 0.039 0.961
13 C -0.129 4.129
14 C -0.148 4.148
15 C 0.172 3.828
16 N -0.587 5.587
17 C -0.239 4.239
18 H 0.076 0.924
19 C 0.002 3.998
20 N -0.914 5.914
21 Si 0.911 3.089
22 H -0.284 1.284
23 H -0.289 1.289
24 H -0.283 1.283
25 H 0.088 0.912
26 H 0.082 0.918
27 H 0.103 0.897
28 H 0.395 0.605
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.058 0.942
32 H 0.064 0.936
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.073 0.927
36 H 0.027 0.973
37 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.814 15.715 1.598 16.513
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.050 4.050
3 N -0.118 5.118
4 N -0.238 5.238
5 S 0.546 5.454
6 C -0.424 4.424
7 C 0.376 3.624
8 O -0.390 6.390
9 N -0.362 5.362
10 C -0.017 4.017
11 C 0.042 3.958
12 H 0.057 0.943
13 C -0.167 4.167
14 C -0.187 4.187
15 C 0.047 3.953
16 N -0.311 5.311
17 C -0.367 4.367
18 H 0.094 0.906
19 C -0.196 4.196
20 N -0.560 5.560
21 Si 0.741 3.259
22 H -0.210 1.210
23 H -0.215 1.215
24 H -0.209 1.209
25 H 0.107 0.893
26 H 0.100 0.900
27 H 0.121 0.879
28 H 0.228 0.772
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.077 0.923
32 H 0.082 0.918
33 H 0.078 0.922
34 H 0.077 0.923
35 H 0.091 0.909
36 H 0.045 0.955
37 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 5.467 16.361 1.562 17.320
hybrid contribution -1.312 -0.859 -0.697 1.716
sum 4.154 15.502 0.865 16.072
Atomic orbital electron populations
1.20538 0.83709 1.05024 1.04437 1.22968 1.00265 0.85042 0.96711
1.70609 0.96956 1.28071 1.16116 1.78864 1.09455 1.15668 1.19777
1.82545 1.10128 1.01519 1.51181 1.27947 0.97821 1.00422 1.16224
1.16493 0.86280 0.81763 0.77872 1.90833 1.15757 1.82854 1.49568
1.46079 1.08853 1.07466 1.73792 1.22438 0.99889 0.76209 1.03118
1.21146 0.92681 0.86631 0.95304 0.94335 1.22635 0.99207 0.97723
0.97092 1.23002 1.00416 0.95763 0.99517 1.21465 0.91766 0.95904
0.86150 1.44477 1.68875 1.02275 1.15491 1.18934 1.27427 1.01996
0.88356 0.90650 1.24918 0.99383 0.98432 0.96862 1.69922 1.47318
1.17196 1.21522 0.86227 0.79652 0.78630 0.81413 1.21025 1.21515
1.20891 0.89306 0.89965 0.87884 0.77188 0.90942 0.90884 0.92302
0.91761 0.92222 0.92271 0.90921 0.95511 0.93457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.79 9.89 36.00 0.36 -0.43 16
2 C 0.10 1.18 7.00 -82.84 -0.58 0.60 16
3 N -0.25 -3.22 11.54 33.42 0.39 -2.83 16
4 N -0.26 -3.10 12.51 60.35 0.75 -2.34 16
5 S 0.41 3.89 23.05 -107.50 -2.48 1.41 16
6 C -0.28 -3.42 6.81 -35.96 -0.24 -3.66 16
7 C 0.59 8.58 7.80 -12.64 -0.10 8.48 16
8 O -0.51 -9.08 14.89 5.25 0.08 -9.00 16
9 N -0.71 -9.70 5.32 -61.46 -0.33 -10.03 16
10 C 0.11 1.90 5.07 -4.04 -0.02 1.88 16
11 C 0.15 2.76 3.22 -66.95 -0.22 2.54 16
12 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
13 C -0.13 -1.97 6.10 -24.90 -0.15 -2.12 16
14 C -0.15 -2.55 7.08 -24.59 -0.17 -2.73 16
15 C 0.17 3.91 5.41 -2.53 -0.01 3.90 16
16 N -0.59 -13.85 3.13 -162.57 -0.51 -14.36 16
17 C -0.24 -6.28 9.76 -15.06 -0.15 -6.42 16
18 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16
19 C 0.00 0.05 5.47 -17.43 -0.10 -0.05 16
20 N -0.91 -25.80 10.58 55.49 0.59 -25.22 16
21 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16
22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16
25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.10 1.18 6.48 -51.93 -0.34 0.85 16
28 H 0.39 4.22 7.76 -40.82 -0.32 3.90 16
29 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16
30 H 0.07 1.46 7.92 -51.93 -0.41 1.05 16
31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.06 0.97 7.81 -51.93 -0.41 0.57 16
33 H 0.06 0.99 8.14 -51.94 -0.42 0.57 16
34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.07 1.86 6.94 -51.93 -0.36 1.49 16
36 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16
37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
LS Contribution 323.54 15.07 4.88 4.88
Total: -1.00 -30.57 323.54 -7.79 -38.36
By element:
Atomic # 1 Polarization: 5.49 SS G_CDS: -4.75 Total: 0.74 kcal
Atomic # 6 Polarization: 3.37 SS G_CDS: -1.38 Total: 1.98 kcal
Atomic # 7 Polarization: -55.67 SS G_CDS: 0.89 Total: -54.78 kcal
Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Atomic # 16 Polarization: 3.89 SS G_CDS: -2.48 Total: 1.41 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -30.57 -7.79 -38.36 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027747936.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.333 kcal
(2) G-P(sol) polarization free energy of solvation -30.571 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds