Wall clock time and date at job start Tue Mar 31 2020 05:02:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.31241 * 124.05855 * 2 1
4 4 N 1.27332 * 120.04210 * 180.26171 * 3 2 1
5 5 S 1.56641 * 109.73857 * 0.02562 * 4 3 2
6 6 C 1.38248 * 124.05239 * 180.29092 * 2 1 3
7 7 C 1.47166 * 128.47723 * 359.75563 * 6 2 1
8 8 O 1.21626 * 120.00296 * 0.02562 * 7 6 2
9 9 N 1.34776 * 120.00012 * 179.97438 * 7 6 2
10 10 C 1.46507 * 119.99976 * 180.02562 * 9 7 6
11 11 C 1.53002 * 109.47050 * 185.13334 * 10 9 7
12 12 H 1.08998 * 109.87031 * 303.57726 * 11 10 9
13 13 C 1.54327 * 109.87993 * 64.59315 * 11 10 9
14 14 C 1.55154 * 102.94068 * 141.61133 * 13 11 10
15 15 C 1.54906 * 101.58049 * 324.49303 * 14 13 11
16 16 N 1.47013 * 109.87867 * 182.39843 * 11 10 9
17 17 C 1.36942 * 125.65119 * 61.62828 * 16 11 10
18 18 H 1.07994 * 119.99716 * 14.74845 * 17 16 11
19 19 C 1.38815 * 119.99772 * 194.75757 * 17 16 11
20 20 N 1.31617 * 120.00323 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99555 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.47544 * 60.00007 * 21 19 17
23 23 H 1.48501 * 109.47111 * 179.97438 * 21 19 17
24 24 H 1.48497 * 109.47168 * 299.99723 * 21 19 17
25 25 H 1.09003 * 109.47550 * 269.70911 * 1 2 3
26 26 H 1.09003 * 109.47116 * 29.70594 * 1 2 3
27 27 H 1.08997 * 109.47245 * 149.70714 * 1 2 3
28 28 H 0.96995 * 120.00127 * 359.97438 * 9 7 6
29 29 H 1.08997 * 109.47064 * 305.13867 * 10 9 7
30 30 H 1.09001 * 109.46929 * 65.13814 * 10 9 7
31 31 H 1.09001 * 110.71537 * 259.97481 * 13 11 10
32 32 H 1.08997 * 110.71950 * 23.24042 * 13 11 10
33 33 H 1.08987 * 111.00747 * 82.57121 * 14 13 11
34 34 H 1.09000 * 111.00189 * 206.42279 * 14 13 11
35 35 H 1.09004 * 110.36543 * 155.84985 * 15 14 13
36 36 H 1.09002 * 110.36901 * 278.06533 * 15 14 13
37 37 H 0.96999 * 119.99906 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2420 1.0873 0.0000
4 7 3.5122 0.9981 -0.0050
5 16 3.9366 -0.5097 -0.0112
6 6 2.2811 -1.1454 -0.0058
7 6 1.8393 -2.5492 -0.0080
8 8 0.6520 -2.8131 -0.0050
9 7 2.7503 -3.5424 -0.0144
10 6 2.3105 -4.9398 -0.0172
11 6 3.5283 -5.8580 0.1046
12 1 4.2331 -5.6473 -0.6998
13 6 4.2124 -5.6440 1.4713
14 6 4.6379 -7.0802 1.8756
15 6 3.4651 -7.9218 1.3136
16 7 3.1024 -7.2639 0.0451
17 6 2.4727 -7.8630 -1.0132
18 1 2.4600 -7.3788 -1.9784
19 6 1.8507 -9.0925 -0.8451
20 7 1.8665 -9.6827 0.3312
21 14 0.9912 -9.9094 -2.2885
22 1 1.9720 -10.1494 -3.3774
23 1 0.4114 -11.2046 -1.8509
24 1 -0.0926 -9.0239 -2.7848
25 1 -0.3634 -0.0052 1.0276
26 1 -0.3633 0.8926 -0.5093
27 1 -0.3633 -0.8873 -0.5184
28 1 3.6972 -3.3319 -0.0180
29 1 1.6403 -5.1115 0.8251
30 1 1.7859 -5.1538 -0.9484
31 1 5.0842 -4.9978 1.3691
32 1 3.5085 -5.2322 2.1945
33 1 5.5795 -7.3567 1.4016
34 1 4.7044 -7.1775 2.9592
35 1 3.7874 -8.9469 1.1306
36 1 2.6224 -7.9074 2.0048
37 1 1.4322 -10.5421 0.4485
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027747936.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:02:47
Heat of formation + Delta-G solvation = 35.572373 kcal
Electronic energy + Delta-G solvation = -21390.261897 eV
Core-core repulsion = 18101.979035 eV
Total energy + Delta-G solvation = -3288.282862 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.08045 -40.74628 -39.23842 -35.91134 -34.42385 -34.34168 -31.55151 -30.85130
-29.15763 -28.02878 -26.70347 -25.68178 -23.38070 -22.04897 -21.54809 -21.04024
-19.55638 -19.00447 -18.28548 -17.33727 -17.22337 -16.64079 -16.28988 -16.06781
-15.67025 -15.26468 -14.94008 -14.65811 -14.14987 -13.97582 -13.92605 -13.63581
-13.52990 -13.36878 -12.97984 -12.85141 -12.63631 -12.58103 -12.04785 -11.86068
-11.72701 -11.50771 -11.46266 -11.37454 -11.16768 -10.96820 -10.79192 -10.65486
-10.18854 -8.84572 -7.86943 -5.24554 -1.38881 -0.27328 0.38176 0.80244
1.46777 1.49405 1.54949 1.83033 1.84961 2.50633 2.78438 3.33154
3.45157 3.57793 3.79756 3.97745 3.99801 4.22810 4.29178 4.46111
4.56079 4.65350 4.74451 4.75504 4.95204 5.02100 5.10351 5.17341
5.21271 5.30264 5.49564 5.56519 5.68828 5.80916 6.23835 6.30567
6.54771 6.96939 7.10708 7.78028 8.43512 9.23739
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.021764 B = 0.003765 C = 0.003403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1286.223688 B = 7434.294825 C = 8225.678980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.098 3.902
3 N -0.273 5.273
4 N -0.281 5.281
5 S 0.512 5.488
6 C -0.312 4.312
7 C 0.599 3.401
8 O -0.552 6.552
9 N -0.697 5.697
10 C 0.129 3.871
11 C 0.146 3.854
12 H 0.056 0.944
13 C -0.117 4.117
14 C -0.134 4.134
15 C 0.173 3.827
16 N -0.610 5.610
17 C -0.241 4.241
18 H 0.079 0.921
19 C -0.057 4.057
20 N -0.945 5.945
21 Si 0.969 3.031
22 H -0.274 1.274
23 H -0.296 1.296
24 H -0.281 1.281
25 H 0.097 0.903
26 H 0.099 0.901
27 H 0.087 0.913
28 H 0.413 0.587
29 H 0.046 0.954
30 H 0.044 0.956
31 H 0.108 0.892
32 H 0.066 0.934
33 H 0.071 0.929
34 H 0.081 0.919
35 H 0.034 0.966
36 H -0.008 1.008
37 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.945 17.832 1.416 19.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.050 4.050
3 N -0.138 5.138
4 N -0.262 5.262
5 S 0.648 5.352
6 C -0.453 4.453
7 C 0.383 3.617
8 O -0.431 6.431
9 N -0.349 5.349
10 C 0.003 3.997
11 C 0.039 3.961
12 H 0.074 0.926
13 C -0.154 4.154
14 C -0.172 4.172
15 C 0.048 3.952
16 N -0.334 5.334
17 C -0.370 4.370
18 H 0.097 0.903
19 C -0.251 4.251
20 N -0.593 5.593
21 Si 0.798 3.202
22 H -0.200 1.200
23 H -0.222 1.222
24 H -0.207 1.207
25 H 0.115 0.885
26 H 0.117 0.883
27 H 0.106 0.894
28 H 0.250 0.750
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.126 0.874
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.100 0.900
35 H 0.053 0.947
36 H 0.010 0.990
37 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 7.649 18.540 1.369 20.103
hybrid contribution -1.871 -1.446 -0.651 2.453
sum 5.778 17.094 0.719 18.058
Atomic orbital electron populations
1.20563 0.83079 1.05062 1.04983 1.23209 1.00990 0.85008 0.95837
1.70693 0.97159 1.28364 1.17541 1.78613 1.09518 1.17950 1.20141
1.82127 1.06651 0.98748 1.47683 1.27655 1.00297 0.98938 1.18417
1.16674 0.85675 0.82656 0.76717 1.90821 1.17484 1.83696 1.51064
1.45712 1.09811 1.05700 1.73721 1.21861 0.98952 0.78390 1.00520
1.21375 0.92884 0.83871 0.98001 0.92593 1.22655 1.00696 0.97277
0.94797 1.22865 0.98080 0.95558 1.00712 1.21270 0.92834 0.95382
0.85729 1.44727 1.68716 1.05009 1.14950 1.19277 1.26389 1.01898
0.89467 0.90306 1.25651 1.00876 0.99496 0.99058 1.70127 1.48670
1.17217 1.23252 0.85296 0.78684 0.77260 0.78976 1.20020 1.22182
1.20735 0.88464 0.88281 0.89402 0.75019 0.93535 0.93769 0.87393
0.91481 0.91073 0.90035 0.94714 0.98980 0.94356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.52 9.89 71.24 0.70 -0.81 16
2 C 0.10 2.22 7.00 42.65 0.30 2.52 16
3 N -0.27 -6.46 11.54 -48.18 -0.56 -7.02 16
4 N -0.28 -6.01 12.51 37.02 0.46 -5.55 16
5 S 0.51 7.84 23.05 -56.49 -1.30 6.53 16
6 C -0.31 -6.90 6.81 24.62 0.17 -6.73 16
7 C 0.60 16.57 7.80 86.59 0.68 17.25 16
8 O -0.55 -19.63 14.89 -4.11 -0.06 -19.69 16
9 N -0.70 -17.58 5.32 -466.61 -2.48 -20.07 16
10 C 0.13 4.47 5.07 86.38 0.44 4.91 16
11 C 0.15 5.07 3.22 45.34 0.15 5.22 16
12 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
13 C -0.12 -3.14 6.10 31.78 0.19 -2.95 16
14 C -0.13 -4.28 7.08 31.98 0.23 -4.05 16
15 C 0.17 8.02 5.41 86.85 0.47 8.49 16
16 N -0.61 -28.96 3.13 -668.26 -2.09 -31.05 16
17 C -0.24 -12.88 9.76 84.03 0.82 -12.06 16
18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16
19 C -0.06 -3.15 5.47 84.86 0.46 -2.69 16
20 N -0.94 -55.63 10.58 21.65 0.23 -55.40 16
21 Si 0.97 45.06 29.55 68.60 2.03 47.09 16
22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16
24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16
26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
27 H 0.09 2.03 6.48 -2.39 -0.02 2.01 16
28 H 0.41 7.23 7.76 -92.71 -0.72 6.51 16
29 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16
30 H 0.04 1.79 7.92 -2.39 -0.02 1.77 16
31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16
32 H 0.07 1.81 7.81 -2.39 -0.02 1.79 16
33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16
35 H 0.03 1.84 6.94 -2.38 -0.02 1.82 16
36 H -0.01 -0.41 8.06 -2.39 -0.02 -0.43 16
37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16
Total: -1.00 -69.91 323.54 1.21 -68.70
By element:
Atomic # 1 Polarization: 6.97 SS G_CDS: 0.38 Total: 7.35 kcal
Atomic # 6 Polarization: 4.49 SS G_CDS: 4.60 Total: 9.09 kcal
Atomic # 7 Polarization: -114.64 SS G_CDS: -4.44 Total: -119.08 kcal
Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal
Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal
Atomic # 16 Polarization: 7.84 SS G_CDS: -1.30 Total: 6.53 kcal
Total: -69.91 1.21 -68.70 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027747936.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.273 kcal
(2) G-P(sol) polarization free energy of solvation -69.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.572 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds