Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69644 * 2 1 4 4 C 1.52761 * 109.50821 * 239.88697 * 2 1 3 5 5 C 1.53043 * 109.37791 * 185.70294 * 4 2 1 6 6 H 1.09001 * 109.44745 * 181.24693 * 5 4 2 7 7 N 1.46497 * 109.46278 * 301.21498 * 5 4 2 8 8 C 1.36940 * 120.00333 * 205.06717 * 7 5 4 9 9 H 1.08002 * 119.99738 * 0.02562 * 8 7 5 10 10 C 1.38803 * 120.00253 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00439 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99904 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47161 * 90.00105 * 12 10 8 14 14 H 1.48503 * 109.47089 * 209.99881 * 12 10 8 15 15 H 1.48501 * 109.47438 * 330.00031 * 12 10 8 16 16 C 1.53043 * 109.54085 * 61.23901 * 5 4 2 17 17 C 1.53191 * 109.31361 * 298.63683 * 16 5 4 18 18 N 1.46920 * 109.58847 * 120.35238 * 2 1 3 19 19 C 1.34782 * 120.62878 * 353.42821 * 18 2 1 20 20 O 1.21559 * 120.00351 * 7.87399 * 19 18 2 21 21 C 1.47754 * 119.99687 * 187.88091 * 19 18 2 22 22 C 1.39353 * 124.11604 * 187.28728 * 21 19 18 23 23 N 1.30084 * 112.14635 * 180.02562 * 22 21 19 24 24 S 1.55925 * 108.75580 * 359.97438 * 23 22 21 25 25 N 1.31496 * 124.11825 * 7.32774 * 21 19 18 26 26 H 1.09002 * 109.47097 * 301.29365 * 1 2 3 27 27 H 1.08999 * 109.47517 * 61.29703 * 1 2 3 28 28 H 1.09005 * 109.47030 * 181.29419 * 1 2 3 29 29 H 1.08999 * 109.56620 * 65.66906 * 4 2 1 30 30 H 1.08998 * 109.38456 * 305.62229 * 4 2 1 31 31 H 0.96998 * 119.99557 * 25.07661 * 7 5 4 32 32 H 0.96997 * 120.00627 * 179.97438 * 11 10 8 33 33 H 1.08992 * 109.50384 * 178.67779 * 16 5 4 34 34 H 1.09005 * 109.49465 * 58.58247 * 16 5 4 35 35 H 1.09008 * 109.58081 * 294.84613 * 17 16 5 36 36 H 1.08994 * 109.70748 * 174.49465 * 17 16 5 37 37 H 1.07998 * 123.92318 * 0.06190 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1727 6 1 3.9312 -1.3416 -2.0713 7 7 4.1577 0.4896 -1.0745 8 6 5.4418 0.7011 -1.5009 9 1 6.0165 -0.1167 -1.9099 10 6 6.0046 1.9664 -1.4074 11 7 7.2386 2.1699 -1.8177 12 14 5.0108 3.3807 -0.6992 13 1 5.2237 3.4491 0.7688 14 1 5.4495 4.6551 -1.3228 15 1 3.5691 3.1625 -0.9806 16 6 3.9524 -1.6685 0.0581 17 6 3.4644 -0.9519 1.3211 18 7 2.0226 -0.6994 1.1945 19 6 1.1673 -1.1070 2.1531 20 8 -0.0320 -1.0270 1.9718 21 6 1.6876 -1.6509 3.4246 22 6 0.8914 -2.2296 4.4111 23 7 1.5900 -2.6295 5.4330 24 16 3.0927 -2.3070 5.1702 25 7 2.9581 -1.6472 3.7634 26 1 -0.3633 0.5338 0.8782 27 1 -0.3634 0.4935 -0.9014 28 1 -0.3633 -1.0275 0.0232 29 1 1.7632 -0.1564 -2.1350 30 1 1.5965 -1.7168 -1.2942 31 1 3.6414 1.2241 -0.7073 32 1 7.6318 3.0542 -1.7527 33 1 5.0363 -1.7759 0.0966 34 1 3.4906 -2.6540 -0.0024 35 1 3.9929 -0.0048 1.4310 36 1 3.6507 -1.5776 2.1939 37 1 -0.1808 -2.3344 4.3356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044476756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = 50.850858 kcal Electronic energy + Delta-G solvation = -22534.904000 eV Core-core repulsion = 19247.283663 eV Total energy + Delta-G solvation = -3287.620337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.45467 -40.93605 -38.89047 -36.09261 -35.06910 -33.81247 -33.38867 -31.47163 -29.03208 -27.90167 -25.79813 -25.08357 -24.37789 -22.83024 -21.34387 -20.42234 -19.98467 -19.78563 -17.88403 -17.32809 -17.06962 -16.67212 -16.48730 -16.21770 -15.57772 -15.29826 -15.26956 -14.92181 -14.58479 -14.28539 -13.75569 -13.47054 -13.39593 -13.14077 -13.00391 -12.83533 -12.60409 -12.34253 -12.26717 -12.14607 -12.07650 -11.99490 -11.76253 -11.44205 -11.30149 -10.82756 -10.28853 -10.21893 -9.61110 -9.25783 -8.00076 -5.31668 -0.67297 0.35909 0.48381 0.62028 1.35403 1.36820 1.44027 1.86753 1.98800 2.47776 3.25079 3.32191 3.53695 3.59739 3.88169 3.95581 4.05958 4.06289 4.32147 4.35471 4.43191 4.49341 4.58632 4.82440 4.91462 4.97849 5.04106 5.10602 5.17375 5.25472 5.30521 5.35883 5.43041 5.68906 5.82071 6.23908 6.31946 6.95158 7.10487 7.87087 8.05269 9.21744 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.005231 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.410609 B = 5350.971190 C = 6038.467634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.126 4.126 5 C 0.169 3.831 6 H 0.051 0.949 7 N -0.746 5.746 8 C -0.217 4.217 9 H 0.062 0.938 10 C -0.059 4.059 11 N -0.984 5.984 12 Si 0.940 3.060 13 H -0.283 1.283 14 H -0.298 1.298 15 H -0.255 1.255 16 C -0.140 4.140 17 C 0.100 3.900 18 N -0.583 5.583 19 C 0.599 3.401 20 O -0.536 6.536 21 C -0.003 4.003 22 C 0.093 3.907 23 N -0.592 5.592 24 S 0.767 5.233 25 N -0.560 5.560 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.362 0.638 32 H 0.256 0.744 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.136 0.864 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 -10.737 13.281 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.038 3.962 3 H 0.075 0.925 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.070 0.930 7 N -0.390 5.390 8 C -0.349 4.349 9 H 0.080 0.920 10 C -0.250 4.250 11 N -0.635 5.635 12 Si 0.769 3.231 13 H -0.210 1.210 14 H -0.225 1.225 15 H -0.180 1.180 16 C -0.181 4.181 17 C -0.024 4.024 18 N -0.314 5.314 19 C 0.382 3.618 20 O -0.414 6.414 21 C -0.175 4.175 22 C -0.099 4.099 23 N -0.434 5.434 24 S 0.811 5.189 25 N -0.411 5.411 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.196 0.804 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.153 0.847 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.652 -11.112 14.329 22.110 hybrid contribution -1.103 1.621 -0.894 2.154 sum -13.754 -9.491 13.436 21.443 Atomic orbital electron populations 1.22119 0.91319 1.03432 1.01299 1.21272 0.96293 0.94686 0.83960 0.92490 1.22122 0.94906 1.02136 0.97264 1.20433 0.92031 0.85238 0.96169 0.93048 1.42845 1.12721 1.07271 1.76169 1.19030 0.89389 0.94885 1.31553 0.92046 1.25316 0.97076 0.99810 1.02814 1.69854 1.15496 1.22512 1.55613 0.85634 0.79586 0.79799 0.78124 1.21004 1.22452 1.17952 1.22364 1.00926 0.98825 0.95952 1.22454 0.78000 1.01453 1.00525 1.48029 1.08329 1.55440 1.19600 1.17084 0.85438 0.77861 0.81418 1.90851 1.14833 1.56396 1.79329 1.22553 0.87514 1.07060 1.00422 1.23874 1.04221 0.95618 0.86178 1.72212 1.12505 1.27184 1.31470 1.79029 1.05003 1.32382 1.02489 1.72660 1.23519 1.24108 1.20832 0.92099 0.92086 0.91111 0.89924 0.89309 0.80430 0.93543 0.92128 0.90738 0.93377 0.84698 0.75449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 7.59 71.98 0.55 -2.67 16 2 C 0.14 4.11 3.18 44.83 0.14 4.25 16 3 H 0.06 1.87 6.64 -2.38 -0.02 1.86 16 4 C -0.13 -3.58 5.05 30.53 0.15 -3.42 16 5 C 0.17 5.97 3.10 45.02 0.14 6.11 16 6 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 7 N -0.75 -32.94 4.11 -322.81 -1.33 -34.27 16 8 C -0.22 -11.89 10.41 84.03 0.87 -11.01 16 9 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 10 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 11 N -0.98 -62.21 13.97 21.65 0.30 -61.91 16 12 Si 0.94 45.26 27.74 68.60 1.90 47.16 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 15 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 16 C -0.14 -4.44 5.78 30.67 0.18 -4.27 16 17 C 0.10 3.09 5.77 86.36 0.50 3.59 16 18 N -0.58 -17.04 2.98 -799.31 -2.38 -19.43 16 19 C 0.60 16.42 7.59 86.76 0.66 17.08 16 20 O -0.54 -15.42 12.23 -3.90 -0.05 -15.47 16 21 C 0.00 -0.06 6.57 41.98 0.28 0.21 16 22 C 0.09 1.78 11.23 85.22 0.96 2.73 16 23 N -0.59 -11.04 11.41 -92.47 -1.05 -12.09 16 24 S 0.77 12.26 23.69 -56.49 -1.34 10.92 16 25 N -0.56 -12.65 7.73 -80.58 -0.62 -13.27 16 26 H 0.06 1.69 6.66 -2.39 -0.02 1.68 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.85 6.84 -2.38 -0.02 1.83 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.36 15.77 3.93 -92.71 -0.36 15.41 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.05 1.77 7.74 -2.38 -0.02 1.75 16 36 H 0.14 3.80 4.15 -30.73 -0.13 3.67 16 37 H 0.23 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -66.97 305.52 0.89 -66.08 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.57 Total: 22.60 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 4.89 Total: 9.68 kcal Atomic # 7 Polarization: -135.89 SS G_CDS: -5.08 Total: -140.97 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.05 Total: -15.47 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: 12.26 SS G_CDS: -1.34 Total: 10.92 kcal Total: -66.97 0.89 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044476756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.932 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds