Wall clock time and date at job start Tue Mar 31 2020 05:16:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09003 * 109.70325 * 2 1
4 4 C 1.53193 * 109.58984 * 239.62936 * 2 1 3
5 5 C 1.53030 * 109.31603 * 185.56357 * 4 2 1
6 6 H 1.08999 * 109.46365 * 301.37376 * 5 4 2
7 7 N 1.46504 * 109.46047 * 181.39849 * 5 4 2
8 8 C 1.36940 * 119.99798 * 154.97528 * 7 5 4
9 9 H 1.07997 * 119.99816 * 359.97438 * 8 7 5
10 10 C 1.38817 * 119.99447 * 179.97438 * 8 7 5
11 11 N 1.31611 * 120.00171 * 359.97438 * 10 8 7
12 12 Si 1.86797 * 119.99436 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.47393 * 60.00509 * 12 10 8
14 14 H 1.48503 * 109.47383 * 300.00006 * 12 10 8
15 15 H 1.48498 * 109.47084 * 180.02562 * 12 10 8
16 16 C 1.53052 * 109.52665 * 61.38578 * 5 4 2
17 17 C 1.53190 * 109.31152 * 298.62881 * 16 5 4
18 18 N 1.46926 * 108.77788 * 54.63306 * 17 16 5
19 19 C 1.34777 * 120.63116 * 126.41239 * 18 17 16
20 20 O 1.21565 * 119.99619 * 174.61361 * 19 18 17
21 21 C 1.47752 * 119.99878 * 354.61031 * 19 18 17
22 22 C 1.39348 * 124.11569 * 187.11172 * 21 19 18
23 23 N 1.30091 * 112.14571 * 179.82614 * 22 21 19
24 24 S 1.55921 * 108.75282 * 0.42606 * 23 22 21
25 25 N 1.31495 * 124.11713 * 7.41526 * 21 19 18
26 26 H 1.08998 * 109.47510 * 306.66023 * 1 2 3
27 27 H 1.09006 * 109.47122 * 66.65791 * 1 2 3
28 28 H 1.08997 * 109.47168 * 186.65691 * 1 2 3
29 29 H 1.09002 * 109.48608 * 65.61577 * 4 2 1
30 30 H 1.09000 * 109.50373 * 305.52712 * 4 2 1
31 31 H 0.96999 * 120.00137 * 334.97105 * 7 5 4
32 32 H 0.96999 * 120.00392 * 0.02562 * 11 10 8
33 33 H 1.08999 * 109.49672 * 58.58023 * 16 5 4
34 34 H 1.08997 * 109.49506 * 178.67381 * 16 5 4
35 35 H 1.09000 * 109.58753 * 174.42123 * 17 16 5
36 36 H 1.08997 * 109.58672 * 294.70642 * 17 16 5
37 37 H 1.08004 * 123.92613 * 0.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8974 1.0262 0.0000
4 6 2.0436 -0.7297 -1.2452
5 6 3.5674 -0.8480 -1.1701
6 1 4.0059 0.1474 -1.0991
7 7 4.0652 -1.5158 -2.3753
8 6 5.3495 -1.2981 -2.7978
9 1 5.9952 -0.6338 -2.2427
10 6 5.8212 -1.9313 -3.9395
11 7 5.0343 -2.7412 -4.6156
12 14 7.5728 -1.6339 -4.5162
13 1 8.5219 -2.0549 -3.4544
14 1 7.7608 -0.1891 -4.8036
15 1 7.8283 -2.4207 -5.7494
16 6 3.9569 -1.6657 0.0637
17 6 3.4650 -0.9469 1.3238
18 7 2.0225 -0.6995 1.1946
19 6 1.1673 -1.1061 2.1537
20 8 -0.0097 -0.8104 2.0836
21 6 1.6605 -1.9113 3.2902
22 6 0.8364 -2.4955 4.2500
23 7 1.5147 -3.1550 5.1429
24 16 3.0328 -3.0364 4.8076
25 7 2.9309 -2.1590 3.5222
26 1 -0.3634 0.6136 0.8243
27 1 -0.3634 0.4072 -0.9436
28 1 -0.3633 -1.0207 0.1191
29 1 1.7658 -0.1673 -2.1367
30 1 1.6031 -1.7257 -1.2910
31 1 3.4851 -2.1122 -2.8740
32 1 4.1246 -2.8954 -4.3163
33 1 3.4983 -2.6528 0.0054
34 1 5.0411 -1.7696 0.1038
35 1 3.6517 -1.5717 2.1973
36 1 3.9920 0.0009 1.4331
37 1 -0.2405 -2.4132 4.2506
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001044476759.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:16:30
Heat of formation + Delta-G solvation = 66.958492 kcal
Electronic energy + Delta-G solvation = -22050.118538 eV
Core-core repulsion = 18763.196681 eV
Total energy + Delta-G solvation = -3286.921857 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.55954 -39.83059 -37.47841 -34.91034 -34.16784 -32.27152 -32.09152 -29.17562
-27.77265 -26.76899 -24.32442 -23.46143 -23.00136 -21.53498 -20.32566 -19.68835
-19.31285 -17.31955 -16.95585 -16.37378 -16.03045 -15.71756 -15.10331 -14.70286
-14.25629 -14.11262 -13.65057 -13.48038 -13.32733 -12.99282 -12.62569 -12.29199
-12.15745 -11.85340 -11.57682 -11.48036 -11.41109 -10.97824 -10.85225 -10.69121
-10.58604 -10.17200 -10.00541 -9.89386 -9.47854 -9.34060 -9.13924 -8.87598
-8.51684 -7.05374 -6.11596 -3.11692 0.12986 1.12090 1.31143 1.33482
2.85120 3.00552 3.50102 3.53486 3.71100 4.14475 4.39676 4.64307
4.83261 5.03866 5.09614 5.18783 5.26723 5.38450 5.49289 5.59802
5.66063 5.80018 5.92527 5.99912 6.08119 6.08432 6.28368 6.31060
6.36920 6.39776 6.45695 6.65449 6.84063 6.98293 7.37368 7.78804
7.99317 8.73903 9.20843 10.07372 10.22653 11.36691
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.020145 B = 0.004085 C = 0.003549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1389.598742 B = 6852.131611 C = 7886.696954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.147 3.853
3 H 0.076 0.924
4 C -0.135 4.135
5 C 0.182 3.818
6 H 0.049 0.951
7 N -0.736 5.736
8 C -0.331 4.331
9 H 0.064 0.936
10 C -0.045 4.045
11 N -0.944 5.944
12 Si 1.079 2.921
13 H -0.295 1.295
14 H -0.295 1.295
15 H -0.285 1.285
16 C -0.145 4.145
17 C 0.065 3.935
18 N -0.577 5.577
19 C 0.598 3.402
20 O -0.525 6.525
21 C 0.020 3.980
22 C 0.087 3.913
23 N -0.573 5.573
24 S 0.691 5.309
25 N -0.532 5.532
26 H 0.075 0.925
27 H 0.048 0.952
28 H 0.065 0.935
29 H 0.076 0.924
30 H 0.062 0.938
31 H 0.366 0.634
32 H 0.255 0.745
33 H 0.054 0.946
34 H 0.074 0.926
35 H 0.146 0.854
36 H 0.064 0.936
37 H 0.214 0.786
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.643 2.367 19.184 20.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.044 3.956
3 H 0.094 0.906
4 C -0.174 4.174
5 C 0.072 3.928
6 H 0.067 0.933
7 N -0.377 5.377
8 C -0.462 4.462
9 H 0.082 0.918
10 C -0.242 4.242
11 N -0.589 5.589
12 Si 0.910 3.090
13 H -0.223 1.223
14 H -0.223 1.223
15 H -0.211 1.211
16 C -0.186 4.186
17 C -0.061 4.061
18 N -0.308 5.308
19 C 0.380 3.620
20 O -0.402 6.402
21 C -0.155 4.155
22 C -0.106 4.106
23 N -0.414 5.414
24 S 0.737 5.263
25 N -0.380 5.380
26 H 0.094 0.906
27 H 0.067 0.933
28 H 0.084 0.916
29 H 0.095 0.905
30 H 0.081 0.919
31 H 0.199 0.801
32 H 0.066 0.934
33 H 0.073 0.927
34 H 0.093 0.907
35 H 0.161 0.839
36 H 0.082 0.918
37 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges -4.311 1.449 19.113 19.647
hybrid contribution -2.523 0.824 0.127 2.657
sum -6.834 2.273 19.240 20.544
Atomic orbital electron populations
1.22211 0.92680 1.03663 1.01026 1.21404 0.95549 0.95290 0.83355
0.90620 1.22312 0.97749 1.00859 0.96518 1.20152 0.90637 0.95102
0.86927 0.93350 1.42440 1.13050 1.54781 1.27464 1.20031 0.89633
1.26272 1.10246 0.91776 1.25755 1.06242 0.97582 0.94645 1.70876
1.08166 1.38383 1.41484 0.83255 0.74162 0.75480 0.76115 1.22292
1.22270 1.21056 1.22590 1.01667 0.99629 0.94708 1.23171 0.78033
1.02091 1.02784 1.48076 1.08375 1.55210 1.19183 1.16919 0.85377
0.79182 0.80522 1.90865 1.16188 1.57070 1.76096 1.22823 0.86878
1.04494 1.01295 1.23758 1.03767 0.94248 0.88834 1.72252 1.11873
1.25810 1.31496 1.79334 1.05281 1.31776 1.09944 1.72846 1.23668
1.20956 1.20572 0.90638 0.93335 0.91600 0.90499 0.91895 0.80069
0.93399 0.92743 0.90702 0.83864 0.91776 0.76976
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.87 7.61 37.15 0.28 -1.59 16
2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16
3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
4 C -0.14 -2.24 4.84 -26.62 -0.13 -2.37 16
5 C 0.18 3.55 2.73 -67.89 -0.19 3.37 16
6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16
7 N -0.74 -18.16 5.12 -53.38 -0.27 -18.44 16
8 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16
9 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16
10 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16
11 N -0.94 -29.08 13.70 55.49 0.76 -28.32 16
12 Si 1.08 25.69 29.92 -169.99 -5.09 20.60 16
13 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16
14 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16
15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
16 C -0.14 -2.54 5.66 -26.61 -0.15 -2.70 16
17 C 0.06 0.93 6.30 -3.71 -0.02 0.91 16
18 N -0.58 -8.26 2.97 -166.36 -0.49 -8.75 16
19 C 0.60 8.32 7.50 -12.37 -0.09 8.23 16
20 O -0.53 -7.82 12.37 5.31 0.07 -7.75 16
21 C 0.02 0.24 6.65 -83.71 -0.56 -0.32 16
22 C 0.09 0.90 11.23 -17.88 -0.20 0.70 16
23 N -0.57 -5.86 11.41 19.42 0.22 -5.64 16
24 S 0.69 5.96 23.69 -107.50 -2.55 3.41 16
25 N -0.53 -6.01 7.57 23.17 0.18 -5.84 16
26 H 0.07 1.04 6.64 -51.93 -0.34 0.70 16
27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.07 0.97 6.86 -51.93 -0.36 0.61 16
29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
31 H 0.37 9.43 6.63 -40.82 -0.27 9.16 16
32 H 0.25 7.75 6.77 -40.82 -0.28 7.47 16
33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16
34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16
35 H 0.15 1.94 3.56 -89.36 -0.32 1.62 16
36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.21 1.77 8.06 -52.48 -0.42 1.34 16
LS Contribution 310.91 15.07 4.69 4.69
Total: -1.00 -32.03 310.91 -8.60 -40.63
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -4.57 Total: 8.00 kcal
Atomic # 6 Polarization: -1.05 SS G_CDS: -1.54 Total: -2.58 kcal
Atomic # 7 Polarization: -67.37 SS G_CDS: 0.39 Total: -66.98 kcal
Atomic # 8 Polarization: -7.82 SS G_CDS: 0.07 Total: -7.75 kcal
Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal
Atomic # 16 Polarization: 5.96 SS G_CDS: -2.55 Total: 3.41 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -32.03 -8.60 -40.63 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044476759.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.587 kcal
(2) G-P(sol) polarization free energy of solvation -32.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds