Wall clock time and date at job start Tue Mar 31 2020 05:16:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09003 * 109.70325 * 2 1
4 4 C 1.53193 * 109.58984 * 239.62936 * 2 1 3
5 5 C 1.53030 * 109.31603 * 185.56357 * 4 2 1
6 6 H 1.08999 * 109.46365 * 301.37376 * 5 4 2
7 7 N 1.46504 * 109.46047 * 181.39849 * 5 4 2
8 8 C 1.36940 * 119.99798 * 154.97528 * 7 5 4
9 9 H 1.07997 * 119.99816 * 359.97438 * 8 7 5
10 10 C 1.38817 * 119.99447 * 179.97438 * 8 7 5
11 11 N 1.31611 * 120.00171 * 359.97438 * 10 8 7
12 12 Si 1.86797 * 119.99436 * 179.97438 * 10 8 7
13 13 H 1.48504 * 109.47393 * 60.00509 * 12 10 8
14 14 H 1.48503 * 109.47383 * 300.00006 * 12 10 8
15 15 H 1.48498 * 109.47084 * 180.02562 * 12 10 8
16 16 C 1.53052 * 109.52665 * 61.38578 * 5 4 2
17 17 C 1.53190 * 109.31152 * 298.62881 * 16 5 4
18 18 N 1.46926 * 108.77788 * 54.63306 * 17 16 5
19 19 C 1.34777 * 120.63116 * 126.41239 * 18 17 16
20 20 O 1.21565 * 119.99619 * 174.61361 * 19 18 17
21 21 C 1.47752 * 119.99878 * 354.61031 * 19 18 17
22 22 C 1.39348 * 124.11569 * 187.11172 * 21 19 18
23 23 N 1.30091 * 112.14571 * 179.82614 * 22 21 19
24 24 S 1.55921 * 108.75282 * 0.42606 * 23 22 21
25 25 N 1.31495 * 124.11713 * 7.41526 * 21 19 18
26 26 H 1.08998 * 109.47510 * 306.66023 * 1 2 3
27 27 H 1.09006 * 109.47122 * 66.65791 * 1 2 3
28 28 H 1.08997 * 109.47168 * 186.65691 * 1 2 3
29 29 H 1.09002 * 109.48608 * 65.61577 * 4 2 1
30 30 H 1.09000 * 109.50373 * 305.52712 * 4 2 1
31 31 H 0.96999 * 120.00137 * 334.97105 * 7 5 4
32 32 H 0.96999 * 120.00392 * 0.02562 * 11 10 8
33 33 H 1.08999 * 109.49672 * 58.58023 * 16 5 4
34 34 H 1.08997 * 109.49506 * 178.67381 * 16 5 4
35 35 H 1.09000 * 109.58753 * 174.42123 * 17 16 5
36 36 H 1.08997 * 109.58672 * 294.70642 * 17 16 5
37 37 H 1.08004 * 123.92613 * 0.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8974 1.0262 0.0000
4 6 2.0436 -0.7297 -1.2452
5 6 3.5674 -0.8480 -1.1701
6 1 4.0059 0.1474 -1.0991
7 7 4.0652 -1.5158 -2.3753
8 6 5.3495 -1.2981 -2.7978
9 1 5.9952 -0.6338 -2.2427
10 6 5.8212 -1.9313 -3.9395
11 7 5.0343 -2.7412 -4.6156
12 14 7.5728 -1.6339 -4.5162
13 1 8.5219 -2.0549 -3.4544
14 1 7.7608 -0.1891 -4.8036
15 1 7.8283 -2.4207 -5.7494
16 6 3.9569 -1.6657 0.0637
17 6 3.4650 -0.9469 1.3238
18 7 2.0225 -0.6995 1.1946
19 6 1.1673 -1.1061 2.1537
20 8 -0.0097 -0.8104 2.0836
21 6 1.6605 -1.9113 3.2902
22 6 0.8364 -2.4955 4.2500
23 7 1.5147 -3.1550 5.1429
24 16 3.0328 -3.0364 4.8076
25 7 2.9309 -2.1590 3.5222
26 1 -0.3634 0.6136 0.8243
27 1 -0.3634 0.4072 -0.9436
28 1 -0.3633 -1.0207 0.1191
29 1 1.7658 -0.1673 -2.1367
30 1 1.6031 -1.7257 -1.2910
31 1 3.4851 -2.1122 -2.8740
32 1 4.1246 -2.8954 -4.3163
33 1 3.4983 -2.6528 0.0054
34 1 5.0411 -1.7696 0.1038
35 1 3.6517 -1.5717 2.1973
36 1 3.9920 0.0009 1.4331
37 1 -0.2405 -2.4132 4.2506
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001044476759.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:16:30
Heat of formation + Delta-G solvation = 45.069105 kcal
Electronic energy + Delta-G solvation = -22051.067733 eV
Core-core repulsion = 18763.196681 eV
Total energy + Delta-G solvation = -3287.871053 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 296.105 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.48971 -40.89059 -38.81311 -36.53803 -35.19493 -33.83677 -33.39517 -30.86811
-28.92352 -27.91934 -25.91574 -24.82613 -24.41020 -22.66334 -21.71145 -20.51036
-20.48221 -19.35273 -18.02920 -17.34539 -17.18664 -16.74356 -16.56036 -16.08974
-15.74319 -15.38573 -15.29869 -14.83699 -14.78615 -14.21125 -13.81864 -13.42496
-13.23796 -13.17669 -12.91586 -12.65958 -12.49293 -12.32637 -12.29093 -12.15064
-12.07818 -11.88689 -11.68818 -11.24751 -11.20548 -10.74402 -10.34045 -10.23632
-9.68746 -9.10989 -8.37788 -5.31932 -0.71404 0.31619 0.44849 0.58452
1.58983 1.68835 1.79720 1.84947 1.98295 2.72063 3.20840 3.41334
3.47826 3.58374 3.79349 3.99966 4.00722 4.05860 4.21195 4.26975
4.46704 4.48375 4.53705 4.62619 4.79683 4.91763 4.92645 5.07774
5.15531 5.18715 5.30263 5.37258 5.40956 5.60714 5.64922 6.26264
6.49895 6.91411 7.09695 7.99767 8.12461 9.13983
Molecular weight = 296.10amu
Principal moments of inertia in cm(-1)
A = 0.020145 B = 0.004085 C = 0.003549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1389.598742 B = 6852.131611 C = 7886.696954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.150 3.850
3 H 0.088 0.912
4 C -0.123 4.123
5 C 0.176 3.824
6 H 0.045 0.955
7 N -0.750 5.750
8 C -0.327 4.327
9 H 0.068 0.932
10 C -0.105 4.105
11 N -0.978 5.978
12 Si 1.126 2.874
13 H -0.277 1.277
14 H -0.277 1.277
15 H -0.295 1.295
16 C -0.132 4.132
17 C 0.075 3.925
18 N -0.584 5.584
19 C 0.598 3.402
20 O -0.537 6.537
21 C 0.000 4.000
22 C 0.091 3.909
23 N -0.591 5.591
24 S 0.773 5.227
25 N -0.557 5.557
26 H 0.075 0.925
27 H 0.060 0.940
28 H 0.051 0.949
29 H 0.074 0.926
30 H 0.052 0.948
31 H 0.357 0.643
32 H 0.242 0.758
33 H 0.039 0.961
34 H 0.059 0.941
35 H 0.160 0.840
36 H 0.074 0.926
37 H 0.228 0.772
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.180 2.941 21.237 22.312
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.047 3.953
3 H 0.106 0.894
4 C -0.162 4.162
5 C 0.068 3.932
6 H 0.063 0.937
7 N -0.391 5.391
8 C -0.458 4.458
9 H 0.086 0.914
10 C -0.296 4.296
11 N -0.626 5.626
12 Si 0.951 3.049
13 H -0.203 1.203
14 H -0.203 1.203
15 H -0.222 1.222
16 C -0.173 4.173
17 C -0.051 4.051
18 N -0.315 5.315
19 C 0.381 3.619
20 O -0.415 6.415
21 C -0.173 4.173
22 C -0.100 4.100
23 N -0.433 5.433
24 S 0.817 5.183
25 N -0.408 5.408
26 H 0.094 0.906
27 H 0.079 0.921
28 H 0.070 0.930
29 H 0.093 0.907
30 H 0.071 0.929
31 H 0.188 0.812
32 H 0.053 0.947
33 H 0.058 0.942
34 H 0.078 0.922
35 H 0.175 0.825
36 H 0.092 0.908
37 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -3.890 2.060 21.221 21.673
hybrid contribution -2.659 0.597 -0.346 2.747
sum -6.549 2.657 20.875 22.038
Atomic orbital electron populations
1.22086 0.91799 1.02862 1.01690 1.21368 0.96105 0.95437 0.82345
0.89390 1.22160 0.95455 1.00653 0.97959 1.20393 0.92471 0.94533
0.85821 0.93730 1.42669 1.12256 1.55094 1.29068 1.20371 0.90719
1.25009 1.09686 0.91392 1.27162 1.09453 0.97592 0.95410 1.70990
1.08092 1.40705 1.42805 0.82644 0.70427 0.76146 0.75649 1.20304
1.20347 1.22161 1.22359 1.00551 0.98881 0.95511 1.23117 0.78147
1.02488 1.01336 1.48080 1.08353 1.55661 1.19423 1.17099 0.85105
0.78873 0.80784 1.90853 1.16605 1.57452 1.76634 1.22519 0.87380
1.05832 1.01563 1.23855 1.04377 0.93623 0.88179 1.72200 1.12993
1.26269 1.31848 1.79037 1.03667 1.28607 1.06976 1.72389 1.23802
1.22081 1.22534 0.90592 0.92128 0.92955 0.90730 0.92946 0.81151
0.94718 0.94242 0.92238 0.82465 0.90784 0.75595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.29 7.61 71.98 0.55 -2.74 16
2 C 0.15 4.15 3.49 44.97 0.16 4.31 16
3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16
4 C -0.12 -4.08 4.84 30.67 0.15 -3.93 16
5 C 0.18 6.90 2.73 45.02 0.12 7.03 16
6 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16
7 N -0.75 -37.71 5.12 -322.80 -1.65 -39.37 16
8 C -0.33 -18.16 9.93 84.03 0.83 -17.33 16
9 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16
10 C -0.11 -6.09 5.50 84.86 0.47 -5.63 16
11 N -0.98 -61.52 13.70 21.65 0.30 -61.22 16
12 Si 1.13 51.63 29.92 68.60 2.05 53.68 16
13 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16
14 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
15 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16
16 C -0.13 -4.63 5.66 30.67 0.17 -4.46 16
17 C 0.07 2.04 6.30 86.36 0.54 2.59 16
18 N -0.58 -16.05 2.97 -798.51 -2.37 -18.42 16
19 C 0.60 15.90 7.50 86.76 0.65 16.55 16
20 O -0.54 -15.39 12.37 -3.92 -0.05 -15.44 16
21 C 0.00 -0.01 6.65 41.98 0.28 0.27 16
22 C 0.09 1.70 11.23 85.22 0.96 2.65 16
23 N -0.59 -10.61 11.41 -92.47 -1.06 -11.66 16
24 S 0.77 11.18 23.69 -56.49 -1.34 9.84 16
25 N -0.56 -11.42 7.57 -80.60 -0.61 -12.03 16
26 H 0.08 1.99 6.64 -2.39 -0.02 1.97 16
27 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16
28 H 0.05 1.50 6.86 -2.39 -0.02 1.48 16
29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
31 H 0.36 19.03 6.63 -92.71 -0.61 18.41 16
32 H 0.24 15.27 6.77 -92.71 -0.63 14.64 16
33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
35 H 0.16 4.00 3.56 -76.30 -0.27 3.73 16
36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
37 H 0.23 3.35 8.06 -2.91 -0.02 3.33 16
Total: -1.00 -68.76 310.91 0.53 -68.23
By element:
Atomic # 1 Polarization: 26.69 SS G_CDS: 0.37 Total: 27.07 kcal
Atomic # 6 Polarization: -5.57 SS G_CDS: 4.88 Total: -0.69 kcal
Atomic # 7 Polarization: -137.30 SS G_CDS: -5.39 Total: -142.70 kcal
Atomic # 8 Polarization: -15.39 SS G_CDS: -0.05 Total: -15.44 kcal
Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal
Atomic # 16 Polarization: 11.18 SS G_CDS: -1.34 Total: 9.84 kcal
Total: -68.76 0.53 -68.23 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044476759.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.302 kcal
(2) G-P(sol) polarization free energy of solvation -68.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds