Wall clock time and date at job start Tue Mar 31 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.58582 * 2 1 4 4 C 1.53186 * 109.58881 * 120.44191 * 2 1 3 5 5 C 1.53035 * 109.31830 * 174.43814 * 4 2 1 6 6 H 1.09005 * 109.46348 * 58.62378 * 5 4 2 7 7 N 1.46498 * 109.46484 * 178.60066 * 5 4 2 8 8 C 1.36936 * 120.00211 * 205.02674 * 7 5 4 9 9 H 1.07997 * 119.99870 * 359.72143 * 8 7 5 10 10 C 1.38811 * 120.00173 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00180 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47069 * 60.00291 * 12 10 8 14 14 H 1.48499 * 109.47174 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47081 * 300.00239 * 12 10 8 16 16 C 1.53037 * 109.52685 * 298.61454 * 5 4 2 17 17 C 1.53194 * 109.31308 * 61.36794 * 16 5 4 18 18 N 1.46926 * 109.58919 * 239.71821 * 2 1 3 19 19 C 1.34782 * 120.62886 * 6.58252 * 18 2 1 20 20 O 1.21623 * 119.99767 * 349.78031 * 19 18 2 21 21 C 1.47171 * 119.99892 * 169.79003 * 19 18 2 22 22 C 1.38245 * 128.47216 * 172.16474 * 21 19 18 23 23 N 1.31250 * 111.88728 * 179.80715 * 22 21 19 24 24 N 1.27338 * 120.03533 * 0.53432 * 23 22 21 25 25 S 1.56638 * 109.74037 * 359.69097 * 24 23 22 26 26 H 1.08998 * 109.47132 * 175.69706 * 1 2 3 27 27 H 1.08994 * 109.47099 * 295.69916 * 1 2 3 28 28 H 1.09000 * 109.47208 * 55.70247 * 1 2 3 29 29 H 1.08998 * 109.50945 * 54.47400 * 4 2 1 30 30 H 1.09005 * 109.48743 * 294.38100 * 4 2 1 31 31 H 0.96998 * 119.99809 * 25.02357 * 7 5 4 32 32 H 0.97004 * 120.00251 * 180.02562 * 11 10 8 33 33 H 1.09001 * 109.50474 * 181.31868 * 16 5 4 34 34 H 1.09000 * 109.50064 * 301.41920 * 16 5 4 35 35 H 1.09000 * 109.58748 * 65.15587 * 17 16 5 36 36 H 1.09007 * 109.59070 * 185.43925 * 17 16 5 37 37 H 1.07997 * 124.06093 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7312 1.2442 5 6 3.5675 -0.8494 1.1691 6 1 4.0059 0.1461 1.0993 7 7 4.0652 -1.5187 2.3734 8 6 5.3494 -1.3015 2.7962 9 1 5.9967 -0.6403 2.2393 10 6 5.8209 -1.9353 3.9377 11 7 5.0337 -2.7453 4.6134 12 14 7.5730 -1.6396 4.5141 13 1 7.7623 -0.1950 4.8017 14 1 7.8279 -2.4268 5.7472 15 1 8.5213 -2.0613 3.4520 16 6 3.9569 -1.6655 -0.0655 17 6 3.4651 -0.9452 -1.3249 18 7 2.0225 -0.6980 -1.1953 19 6 1.1673 -1.1042 -2.1546 20 8 -0.0320 -1.0640 -1.9567 21 6 1.6848 -1.5965 -3.4414 22 6 0.9883 -2.1874 -4.4791 23 7 1.7757 -2.4995 -5.4817 24 7 3.0240 -2.2578 -5.4110 25 16 3.3552 -1.5835 -4.0365 26 1 -0.3633 -1.0247 -0.0771 27 1 -0.3633 0.4456 0.9260 28 1 -0.3634 0.5791 -0.8490 29 1 1.6031 -1.7273 1.2888 30 1 1.7658 -0.1699 2.1364 31 1 3.4851 -2.1156 2.8714 32 1 5.3630 -3.1879 5.4112 33 1 5.0412 -1.7693 -0.1060 34 1 3.4984 -2.6527 -0.0086 35 1 3.9903 0.0039 -1.4317 36 1 3.6541 -1.5678 -2.1995 37 1 -0.0764 -2.3679 -4.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044489000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:09 Heat of formation + Delta-G solvation = 73.795717 kcal Electronic energy + Delta-G solvation = -21877.846811 eV Core-core repulsion = 18591.221438 eV Total energy + Delta-G solvation = -3286.625373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04815 -40.43498 -37.57495 -34.71302 -33.52056 -32.08594 -31.68356 -29.52893 -27.78249 -26.99067 -24.53048 -23.67352 -23.17908 -21.40923 -20.38544 -19.74306 -18.95110 -17.24906 -17.08241 -16.29080 -16.18469 -15.43908 -15.12867 -14.93093 -14.49949 -13.92346 -13.81984 -13.49100 -13.37233 -12.85096 -12.66375 -12.52425 -12.32024 -12.14038 -11.74987 -11.64100 -11.02631 -10.96320 -10.94281 -10.64954 -10.35873 -10.30409 -10.16083 -9.99632 -9.85143 -9.72217 -9.38047 -8.98612 -8.69609 -7.08240 -5.85604 -3.15831 -0.46310 0.58994 1.27844 1.79414 2.65372 2.80263 3.37563 3.42395 3.43784 3.81436 4.18153 4.49234 4.50827 4.68270 4.99815 5.07833 5.11110 5.28333 5.33520 5.36113 5.49221 5.61806 5.74229 5.86995 5.97563 6.10371 6.16883 6.28737 6.31295 6.38870 6.59613 6.73059 6.88581 7.15337 7.46531 7.59812 7.85625 8.32072 9.43658 9.99515 10.34016 11.36566 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.004068 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.265026 B = 6881.328579 C = 7855.915204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.151 3.849 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.245 4.245 9 H 0.071 0.929 10 C -0.010 4.010 11 N -0.931 5.931 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.107 3.893 18 N -0.596 5.596 19 C 0.600 3.400 20 O -0.514 6.514 21 C -0.290 4.290 22 C 0.068 3.932 23 N -0.255 5.255 24 N -0.287 5.287 25 S 0.445 5.555 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.385 0.615 32 H 0.257 0.743 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 5.210 -15.038 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.362 5.362 8 C -0.376 4.376 9 H 0.089 0.911 10 C -0.206 4.206 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.191 4.191 17 C -0.019 4.019 18 N -0.329 5.329 19 C 0.385 3.615 20 O -0.391 6.391 21 C -0.431 4.431 22 C -0.098 4.098 23 N -0.120 5.120 24 N -0.266 5.266 25 S 0.582 5.418 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.218 0.782 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.190 5.070 -15.974 17.545 hybrid contribution -0.382 -0.242 1.035 1.130 sum -5.572 4.828 -14.939 16.659 Atomic orbital electron populations 1.22253 0.92543 1.04218 1.00722 1.21425 0.95679 0.95031 0.83000 0.90373 1.22330 0.97550 1.01227 0.96469 1.20155 0.90954 0.95056 0.86981 0.93107 1.42410 1.13020 1.54224 1.26557 1.19176 0.89048 1.22701 1.06717 0.91120 1.24753 0.98161 0.99590 0.98120 1.69648 1.35548 1.33152 1.19492 0.86287 0.84481 0.77522 0.77974 1.21195 1.21684 1.21220 1.22740 1.02205 1.00194 0.93990 1.22232 0.79859 1.00929 0.98864 1.48066 1.07420 1.57129 1.20275 1.16606 0.85954 0.77858 0.81106 1.90894 1.14587 1.54408 1.79202 1.28278 0.98895 1.12764 1.03201 1.24447 1.03046 0.95391 0.86922 1.70847 0.96332 1.18779 1.26003 1.78626 1.11285 1.17783 1.18925 1.83095 1.09190 1.43848 1.05698 0.90372 0.93177 0.91758 0.91480 0.90141 0.78154 0.93345 0.89913 0.91820 0.89819 0.92263 0.77017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.60 37.15 0.28 -1.46 16 2 C 0.15 1.88 3.49 -67.61 -0.24 1.65 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -2.03 4.84 -26.62 -0.13 -2.16 16 5 C 0.18 3.09 2.73 -67.89 -0.19 2.90 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -16.62 5.12 -53.39 -0.27 -16.89 16 8 C -0.25 -6.33 9.93 -15.06 -0.15 -6.48 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 11 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 12 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.15 -2.23 5.66 -26.61 -0.15 -2.38 16 17 C 0.11 1.21 5.71 -3.71 -0.02 1.19 16 18 N -0.60 -7.29 2.97 -166.58 -0.50 -7.78 16 19 C 0.60 7.64 7.56 -12.63 -0.10 7.54 16 20 O -0.51 -7.46 12.43 5.26 0.07 -7.40 16 21 C -0.29 -3.26 6.49 -35.95 -0.23 -3.49 16 22 C 0.07 0.74 11.56 -17.80 -0.21 0.53 16 23 N -0.26 -3.17 11.54 30.36 0.35 -2.82 16 24 N -0.29 -3.51 12.51 60.35 0.75 -2.76 16 25 S 0.44 4.37 19.38 -107.50 -2.08 2.28 16 26 H 0.08 1.10 6.55 -51.93 -0.34 0.76 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.82 6.95 -51.93 -0.36 0.45 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.38 9.62 7.80 -40.82 -0.32 9.30 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.61 3.19 -19.75 -0.06 0.54 16 37 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -30.17 312.71 -6.92 -37.08 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.43 Total: 6.04 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.22 Total: -2.51 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 1.06 Total: -56.53 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.07 Total: -7.40 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -2.08 Total: 2.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.17 -6.92 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.880 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds